Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47084 * 2 1 4 4 C 1.36939 * 119.99932 * 275.77590 * 3 2 1 5 5 H 1.07992 * 120.00339 * 33.51469 * 4 3 2 6 6 C 1.38807 * 119.99399 * 213.51731 * 4 3 2 7 7 N 1.31621 * 120.00690 * 17.06882 * 6 4 3 8 8 Si 1.86805 * 119.99724 * 197.06516 * 6 4 3 9 9 H 1.48495 * 109.46854 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46819 * 120.00221 * 8 6 4 11 11 H 1.48492 * 109.47353 * 239.99955 * 8 6 4 12 12 C 1.46501 * 119.99725 * 95.76786 * 3 2 1 13 13 H 1.08997 * 109.46743 * 179.49639 * 12 3 2 14 14 C 1.53004 * 109.46787 * 59.50080 * 12 3 2 15 15 C 1.52999 * 109.47707 * 299.49892 * 12 3 2 16 16 N 1.46498 * 109.46771 * 305.00153 * 15 12 3 17 17 C 1.34778 * 119.99734 * 179.97438 * 16 15 12 18 18 O 1.21280 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.53005 * 110.01413 * 59.30223 * 19 17 16 21 21 C 1.54257 * 110.03399 * 297.91046 * 19 17 16 22 22 C 1.54970 * 104.16066 * 217.13663 * 21 19 17 23 23 C 1.54882 * 102.77369 * 37.88611 * 22 21 19 24 24 C 1.53877 * 110.03095 * 180.68723 * 19 17 16 25 25 H 1.09005 * 109.46716 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46810 * 299.99388 * 1 2 3 27 27 H 1.08997 * 109.47554 * 60.00165 * 1 2 3 28 28 H 1.09001 * 109.47013 * 239.99867 * 2 1 3 29 29 H 1.09001 * 109.46932 * 120.00202 * 2 1 3 30 30 H 0.96995 * 120.00150 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46841 * 59.99785 * 14 12 3 32 32 H 1.09003 * 109.46777 * 179.97438 * 14 12 3 33 33 H 1.08997 * 109.47119 * 299.99329 * 14 12 3 34 34 H 1.09004 * 109.46782 * 64.99703 * 15 12 3 35 35 H 1.08995 * 109.47305 * 185.00260 * 15 12 3 36 36 H 0.97004 * 120.00554 * 359.97438 * 16 15 12 37 37 H 1.09001 * 109.47497 * 60.70035 * 20 19 17 38 38 H 1.08997 * 109.47305 * 180.69970 * 20 19 17 39 39 H 1.08997 * 109.46824 * 300.69830 * 20 19 17 40 40 H 1.09000 * 110.48811 * 335.78574 * 21 19 17 41 41 H 1.09005 * 110.48885 * 98.42472 * 21 19 17 42 42 H 1.09001 * 110.71692 * 279.56987 * 22 21 19 43 43 H 1.08997 * 110.92400 * 156.30038 * 22 21 19 44 44 H 1.09010 * 110.48570 * 203.40434 * 23 22 21 45 45 H 1.09002 * 110.48813 * 80.77075 * 23 22 21 46 46 H 1.08998 * 110.03345 * 238.56922 * 24 19 17 47 47 H 1.08994 * 110.03303 * 359.95946 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1341 2.0665 -1.1799 5 1 1.4332 1.8845 -1.9811 6 6 3.1523 2.9952 -1.3460 7 7 4.1897 2.9865 -0.5360 8 14 3.0502 4.2574 -2.7194 9 1 1.7929 4.0567 -3.4836 10 1 3.0628 5.6238 -2.1378 11 1 4.2135 4.0955 -3.6280 12 6 2.3827 2.0293 1.2624 13 1 2.7295 3.0433 1.0633 14 6 3.4988 1.2326 1.9410 15 6 1.1606 2.0795 2.1814 16 7 0.0527 2.7382 1.4850 17 6 -1.1339 2.8959 2.1043 18 8 -1.2848 2.4919 3.2379 19 6 -2.2734 3.5741 1.3882 20 6 -2.6181 2.8082 0.1093 21 6 -1.8915 5.0290 1.0462 22 6 -3.2062 5.8238 1.2493 23 6 -3.8293 5.1430 2.4932 24 6 -3.5053 3.6462 2.3075 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.9013 3.6353 -0.6524 31 1 4.3695 1.1969 1.2863 32 1 3.7702 1.7150 2.8800 33 1 3.1520 0.2186 2.1401 34 1 0.8676 1.0650 2.4520 35 1 1.4070 2.6395 3.0834 36 1 0.1732 3.0610 0.5782 37 1 -2.9221 1.7930 0.3644 38 1 -3.4343 3.3128 -0.4077 39 1 -1.7433 2.7732 -0.5401 40 1 -1.1188 5.3902 1.7249 41 1 -1.5563 5.1023 0.0116 42 1 -3.8589 5.7173 0.3829 43 1 -2.9987 6.8753 1.4477 44 1 -4.9078 5.3001 2.5139 45 1 -3.3701 5.5225 3.4060 46 1 -4.3489 3.1365 1.8421 47 1 -3.2792 3.1901 3.2712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154516041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -42.691307 kcal Electronic energy + Delta-G solvation = -24544.024036 eV Core-core repulsion = 21340.338687 eV Total energy + Delta-G solvation = -3203.685349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07144 -37.52888 -36.53718 -33.64938 -31.89721 -31.59716 -30.54780 -28.61227 -28.16490 -25.87485 -25.00721 -23.93222 -21.82324 -21.27206 -20.61219 -19.31317 -18.48390 -16.99850 -16.64562 -15.68649 -15.03938 -14.91554 -14.75604 -14.25635 -13.95593 -13.62355 -13.40958 -13.03093 -12.69285 -12.55203 -12.38944 -12.27498 -11.95935 -11.82279 -11.50133 -11.41096 -11.09989 -11.07309 -10.95387 -10.95153 -10.83539 -10.80550 -10.62252 -10.53613 -10.38939 -10.28378 -10.06533 -9.63486 -9.42800 -9.12224 -8.52719 -8.31269 -6.66683 -5.89246 -3.38101 3.16641 3.28701 3.38815 3.39217 3.84192 4.40484 4.54972 4.68127 4.87909 5.25881 5.30401 5.34779 5.39864 5.44154 5.52674 5.56691 5.69718 5.84513 5.92096 5.92975 5.97509 6.03406 6.06935 6.12688 6.21746 6.23380 6.28004 6.34970 6.35786 6.39734 6.48967 6.50983 6.55988 6.64705 6.69750 6.84097 6.91928 7.15591 7.17454 7.49117 7.57832 7.76084 8.25278 8.42709 8.83558 9.15365 9.76913 10.34422 11.17226 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.006388 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.687913 B = 4381.989384 C = 5159.282874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.698 5.698 17 C 0.516 3.484 18 O -0.562 6.562 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.114 4.114 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 2.439 2.679 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.390 4.390 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.301 3.699 18 O -0.441 6.441 19 C -0.086 4.086 20 C -0.194 4.194 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.152 4.152 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.315 2.233 3.455 12.039 hybrid contribution 0.194 0.756 -1.167 1.404 sum -11.121 2.990 2.288 11.741 Atomic orbital electron populations 1.22460 1.00028 0.98930 1.01554 1.20755 0.91702 0.87474 0.98670 1.43868 1.75942 1.08238 1.02248 1.19110 1.08256 1.18255 0.93427 0.91870 1.25156 0.94562 1.01378 0.97776 1.70011 1.07763 1.36039 1.39494 0.86365 0.77639 0.81644 0.81963 1.20164 1.21541 1.21718 1.20496 0.88963 0.99455 0.84229 0.88260 1.22016 1.01135 0.97989 0.99189 1.22147 0.88532 0.96099 0.95653 1.45950 1.11117 1.58649 1.19025 1.20407 0.83910 0.79130 0.86414 1.90594 1.82957 1.51553 1.19035 1.21364 0.94540 0.96150 0.96546 1.21887 1.02290 0.99713 0.95462 1.22460 0.97929 0.92556 1.02200 1.22489 0.96495 0.98860 0.98103 1.22348 1.00048 0.95441 0.98196 1.22212 0.95422 0.96652 1.00886 0.94968 0.92871 0.93450 0.94179 0.94557 0.93618 0.90406 0.94871 0.95152 0.92990 0.93195 0.75254 0.92349 0.91920 0.91434 0.91215 0.90586 0.91459 0.91626 0.91886 0.91739 0.91706 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.88 37.16 0.37 -2.68 16 2 C 0.14 2.82 5.69 -4.04 -0.02 2.80 16 3 N -0.58 -12.91 1.85 -165.66 -0.31 -13.21 16 4 C -0.26 -6.38 9.23 -15.06 -0.14 -6.52 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.29 4.86 -17.43 -0.08 0.20 16 7 N -0.89 -23.50 10.66 55.49 0.59 -22.90 16 8 Si 0.89 20.08 29.59 -169.99 -5.03 15.05 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.18 3.76 1.93 -67.93 -0.13 3.63 16 13 H 0.10 2.42 6.02 -51.93 -0.31 2.10 16 14 C -0.14 -2.95 9.05 37.16 0.34 -2.62 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.96 16 16 N -0.70 -12.71 3.88 -60.29 -0.23 -12.94 16 17 C 0.52 9.14 6.16 -10.98 -0.07 9.07 16 18 O -0.56 -11.64 15.21 5.56 0.08 -11.55 16 19 C -0.08 -1.17 0.78 -154.54 -0.12 -1.29 16 20 C -0.14 -1.76 8.04 37.16 0.30 -1.46 16 21 C -0.11 -1.47 5.84 -25.03 -0.15 -1.61 16 22 C -0.12 -1.31 6.91 -24.70 -0.17 -1.48 16 23 C -0.12 -1.37 6.83 -25.08 -0.17 -1.54 16 24 C -0.11 -1.49 6.06 -25.61 -0.16 -1.65 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.99 5.05 -51.93 -0.26 0.72 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.04 0.71 6.41 -51.93 -0.33 0.38 16 30 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.08 1.81 7.45 -51.93 -0.39 1.42 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 34 H 0.05 1.04 7.04 -51.93 -0.37 0.68 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.41 7.67 7.25 -40.82 -0.30 7.37 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 40 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 41 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 47 H 0.09 1.35 6.39 -51.93 -0.33 1.02 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -26.78 356.96 -8.17 -34.95 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.44 Total: 8.41 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.22 Total: -3.18 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.05 Total: -49.06 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.78 -8.17 -34.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154516041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.741 kcal (2) G-P(sol) polarization free energy of solvation -26.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds