Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47084 * 2 1 4 4 C 1.36939 * 119.99932 * 275.77590 * 3 2 1 5 5 H 1.07992 * 120.00339 * 33.51469 * 4 3 2 6 6 C 1.38807 * 119.99399 * 213.51731 * 4 3 2 7 7 N 1.31621 * 120.00690 * 17.06882 * 6 4 3 8 8 Si 1.86805 * 119.99724 * 197.06516 * 6 4 3 9 9 H 1.48495 * 109.46854 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46819 * 120.00221 * 8 6 4 11 11 H 1.48492 * 109.47353 * 239.99955 * 8 6 4 12 12 C 1.46501 * 119.99725 * 95.76786 * 3 2 1 13 13 H 1.08997 * 109.46743 * 179.49639 * 12 3 2 14 14 C 1.53004 * 109.46787 * 59.50080 * 12 3 2 15 15 C 1.52999 * 109.47707 * 299.49892 * 12 3 2 16 16 N 1.46498 * 109.46771 * 305.00153 * 15 12 3 17 17 C 1.34778 * 119.99734 * 179.97438 * 16 15 12 18 18 O 1.21280 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.53005 * 110.01413 * 59.30223 * 19 17 16 21 21 C 1.54257 * 110.03399 * 297.91046 * 19 17 16 22 22 C 1.54970 * 104.16066 * 217.13663 * 21 19 17 23 23 C 1.54882 * 102.77369 * 37.88611 * 22 21 19 24 24 C 1.53877 * 110.03095 * 180.68723 * 19 17 16 25 25 H 1.09005 * 109.46716 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46810 * 299.99388 * 1 2 3 27 27 H 1.08997 * 109.47554 * 60.00165 * 1 2 3 28 28 H 1.09001 * 109.47013 * 239.99867 * 2 1 3 29 29 H 1.09001 * 109.46932 * 120.00202 * 2 1 3 30 30 H 0.96995 * 120.00150 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46841 * 59.99785 * 14 12 3 32 32 H 1.09003 * 109.46777 * 179.97438 * 14 12 3 33 33 H 1.08997 * 109.47119 * 299.99329 * 14 12 3 34 34 H 1.09004 * 109.46782 * 64.99703 * 15 12 3 35 35 H 1.08995 * 109.47305 * 185.00260 * 15 12 3 36 36 H 0.97004 * 120.00554 * 359.97438 * 16 15 12 37 37 H 1.09001 * 109.47497 * 60.70035 * 20 19 17 38 38 H 1.08997 * 109.47305 * 180.69970 * 20 19 17 39 39 H 1.08997 * 109.46824 * 300.69830 * 20 19 17 40 40 H 1.09000 * 110.48811 * 335.78574 * 21 19 17 41 41 H 1.09005 * 110.48885 * 98.42472 * 21 19 17 42 42 H 1.09001 * 110.71692 * 279.56987 * 22 21 19 43 43 H 1.08997 * 110.92400 * 156.30038 * 22 21 19 44 44 H 1.09010 * 110.48570 * 203.40434 * 23 22 21 45 45 H 1.09002 * 110.48813 * 80.77075 * 23 22 21 46 46 H 1.08998 * 110.03345 * 238.56922 * 24 19 17 47 47 H 1.08994 * 110.03303 * 359.95946 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1341 2.0665 -1.1799 5 1 1.4332 1.8845 -1.9811 6 6 3.1523 2.9952 -1.3460 7 7 4.1897 2.9865 -0.5360 8 14 3.0502 4.2574 -2.7194 9 1 1.7929 4.0567 -3.4836 10 1 3.0628 5.6238 -2.1378 11 1 4.2135 4.0955 -3.6280 12 6 2.3827 2.0293 1.2624 13 1 2.7295 3.0433 1.0633 14 6 3.4988 1.2326 1.9410 15 6 1.1606 2.0795 2.1814 16 7 0.0527 2.7382 1.4850 17 6 -1.1339 2.8959 2.1043 18 8 -1.2848 2.4919 3.2379 19 6 -2.2734 3.5741 1.3882 20 6 -2.6181 2.8082 0.1093 21 6 -1.8915 5.0290 1.0462 22 6 -3.2062 5.8238 1.2493 23 6 -3.8293 5.1430 2.4932 24 6 -3.5053 3.6462 2.3075 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.9013 3.6353 -0.6524 31 1 4.3695 1.1969 1.2863 32 1 3.7702 1.7150 2.8800 33 1 3.1520 0.2186 2.1401 34 1 0.8676 1.0650 2.4520 35 1 1.4070 2.6395 3.0834 36 1 0.1732 3.0610 0.5782 37 1 -2.9221 1.7930 0.3644 38 1 -3.4343 3.3128 -0.4077 39 1 -1.7433 2.7732 -0.5401 40 1 -1.1188 5.3902 1.7249 41 1 -1.5563 5.1023 0.0116 42 1 -3.8589 5.7173 0.3829 43 1 -2.9987 6.8753 1.4477 44 1 -4.9078 5.3001 2.5139 45 1 -3.3701 5.5225 3.4060 46 1 -4.3489 3.1365 1.8421 47 1 -3.2792 3.1901 3.2712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154516041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -55.583174 kcal Electronic energy + Delta-G solvation = -24544.583069 eV Core-core repulsion = 21340.338687 eV Total energy + Delta-G solvation = -3204.244382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38463 -38.98546 -37.98620 -35.24760 -33.71563 -32.98407 -31.84383 -29.93858 -29.57988 -27.27019 -26.22867 -25.74928 -23.42216 -22.62741 -21.52197 -21.01699 -19.86857 -18.67728 -17.97085 -17.13168 -16.61625 -16.42173 -16.10395 -15.71172 -15.51054 -15.01051 -14.65992 -14.31217 -14.23230 -13.98714 -13.80543 -13.56409 -13.43754 -13.31407 -13.08824 -12.82377 -12.70532 -12.56669 -12.49672 -12.39099 -12.02157 -12.00451 -11.94215 -11.86394 -11.67923 -11.57601 -11.35934 -11.35252 -11.16128 -10.54202 -10.42478 -9.86125 -8.51186 -7.80722 -5.31115 1.48811 1.54605 1.61487 1.75803 2.43370 2.55836 3.33891 3.53261 3.62519 3.69212 3.81863 4.19251 4.29223 4.36833 4.44707 4.47060 4.51562 4.55757 4.59512 4.68821 4.77153 4.80588 4.88398 4.91223 4.93457 4.95567 5.00280 5.02035 5.06576 5.11621 5.17617 5.22613 5.24001 5.33365 5.34656 5.42734 5.48919 5.56682 5.63958 5.70786 5.78292 5.87541 6.51539 6.77612 7.25216 7.38286 7.93791 8.46852 9.23384 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.006388 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.687913 B = 4381.989384 C = 5159.282874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.589 5.589 4 C -0.257 4.257 5 H 0.063 0.937 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.265 1.265 10 H -0.293 1.293 11 H -0.301 1.301 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.135 4.135 15 C 0.115 3.885 16 N -0.696 5.696 17 C 0.513 3.487 18 O -0.594 6.594 19 C -0.080 4.080 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.247 0.753 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.409 0.591 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 2.879 1.927 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.311 5.311 4 C -0.387 4.387 5 H 0.080 0.920 6 C -0.230 4.230 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.220 1.220 11 H -0.229 1.229 12 C 0.075 3.925 13 H 0.088 0.912 14 C -0.194 4.194 15 C -0.011 4.011 16 N -0.345 5.345 17 C 0.301 3.699 18 O -0.476 6.476 19 C -0.083 4.083 20 C -0.188 4.188 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.536 2.663 2.696 14.056 hybrid contribution 0.887 0.552 -0.899 1.378 sum -12.648 3.214 1.797 13.173 Atomic orbital electron populations 1.22261 0.97983 1.00184 1.00962 1.20839 0.93142 0.86254 0.98494 1.43972 1.76073 1.09092 1.01947 1.19270 1.07570 1.17970 0.93907 0.91983 1.25720 0.94525 1.03054 0.99701 1.70144 1.08324 1.36567 1.41035 0.85486 0.77420 0.79477 0.79691 1.18904 1.21968 1.22886 1.20328 0.89827 0.97907 0.84396 0.91205 1.21881 0.99668 0.98779 0.99093 1.21863 0.88216 0.95999 0.95070 1.45924 1.11172 1.58577 1.18827 1.21107 0.84327 0.78413 0.86089 1.90579 1.83515 1.52947 1.20575 1.21438 0.93330 0.96588 0.96955 1.21863 1.02711 0.99645 0.94601 1.22485 0.98919 0.92005 1.01957 1.22487 0.95160 0.98984 0.98496 1.22344 1.01497 0.93808 0.98063 1.22212 0.95398 0.98212 0.99307 0.92786 0.93619 0.93747 0.95018 0.94049 0.94317 0.93319 0.93355 0.93944 0.93331 0.93442 0.75397 0.92758 0.89222 0.92564 0.93005 0.90106 0.89595 0.90510 0.89569 0.92730 0.89938 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.88 71.98 0.71 -4.58 16 2 C 0.14 5.45 5.69 86.38 0.49 5.94 16 3 N -0.59 -26.08 1.85 -678.03 -1.26 -27.34 16 4 C -0.26 -12.50 9.23 84.03 0.78 -11.73 16 5 H 0.06 3.01 7.89 -2.91 -0.02 2.99 16 6 C -0.03 -1.65 4.86 84.86 0.41 -1.24 16 7 N -0.92 -49.23 10.66 21.65 0.23 -49.00 16 8 Si 0.95 41.35 29.59 68.60 2.03 43.38 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 12 C 0.18 7.88 1.93 44.99 0.09 7.97 16 13 H 0.07 3.48 6.02 -2.39 -0.01 3.46 16 14 C -0.13 -5.56 9.05 71.98 0.65 -4.91 16 15 C 0.11 4.47 4.34 86.38 0.37 4.84 16 16 N -0.70 -25.28 3.88 -463.06 -1.80 -27.08 16 17 C 0.51 18.03 6.16 87.66 0.54 18.57 16 18 O -0.59 -24.75 15.21 -3.03 -0.05 -24.80 16 19 C -0.08 -2.14 0.78 -52.20 -0.04 -2.18 16 20 C -0.13 -3.09 8.04 71.98 0.58 -2.51 16 21 C -0.12 -2.79 5.84 31.69 0.18 -2.61 16 22 C -0.11 -2.09 6.91 31.91 0.22 -1.87 16 23 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 24 C -0.11 -2.77 6.06 31.32 0.19 -2.58 16 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.04 1.63 5.05 -2.39 -0.01 1.62 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.04 1.58 6.41 -2.39 -0.02 1.56 16 30 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.05 2.29 7.45 -2.39 -0.02 2.27 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.60 6.65 -2.39 -0.02 1.59 16 34 H 0.05 1.93 7.04 -2.38 -0.02 1.91 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.41 15.21 7.25 -92.71 -0.67 14.54 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.46 7.55 -2.39 -0.02 1.44 16 40 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 41 H 0.08 1.86 7.84 -2.38 -0.02 1.84 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 47 H 0.06 1.83 6.39 -2.39 -0.02 1.82 16 Total: -1.00 -57.47 356.96 4.81 -52.65 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.26 Total: 31.19 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.39 Total: 0.99 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -2.82 Total: -103.42 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -57.47 4.81 -52.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154516041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.931 kcal (2) G-P(sol) polarization free energy of solvation -57.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds