Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47454 * 2 1 4 4 C 1.36930 * 120.00457 * 275.73724 * 3 2 1 5 5 H 1.08004 * 120.00135 * 33.28129 * 4 3 2 6 6 C 1.38813 * 120.00169 * 213.27745 * 4 3 2 7 7 N 1.31618 * 119.99858 * 17.26763 * 6 4 3 8 8 Si 1.86800 * 120.00021 * 197.26226 * 6 4 3 9 9 H 1.48501 * 109.47044 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47071 * 120.00305 * 8 6 4 11 11 H 1.48503 * 109.46987 * 240.00405 * 8 6 4 12 12 C 1.46500 * 119.99645 * 95.73580 * 3 2 1 13 13 H 1.08996 * 109.47421 * 180.02562 * 12 3 2 14 14 C 1.52998 * 109.47283 * 60.05491 * 12 3 2 15 15 C 1.52998 * 109.47357 * 300.05700 * 12 3 2 16 16 N 1.46506 * 109.46964 * 305.00156 * 15 12 3 17 17 C 1.34780 * 119.99977 * 179.72624 * 16 15 12 18 18 O 1.21281 * 119.99588 * 0.27180 * 17 16 15 19 19 C 1.50701 * 120.00001 * 180.27492 * 17 16 15 20 20 C 1.53001 * 109.46814 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.46587 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47172 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50194 * 243.75062 * 22 21 20 24 24 C 1.52993 * 117.49950 * 175.08794 * 22 21 20 25 25 H 1.08994 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47188 * 299.99916 * 1 2 3 27 27 H 1.08998 * 109.46905 * 59.99758 * 1 2 3 28 28 H 1.09002 * 109.46816 * 239.99862 * 2 1 3 29 29 H 1.09001 * 109.47348 * 120.00504 * 2 1 3 30 30 H 0.97004 * 119.99902 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46816 * 59.99913 * 14 12 3 32 32 H 1.09006 * 109.47596 * 179.97438 * 14 12 3 33 33 H 1.09002 * 109.47441 * 300.00182 * 14 12 3 34 34 H 1.09001 * 109.47382 * 185.00335 * 15 12 3 35 35 H 1.09005 * 109.47345 * 64.99856 * 15 12 3 36 36 H 0.96998 * 119.99606 * 359.97438 * 16 15 12 37 37 H 1.09001 * 109.46632 * 299.99956 * 19 17 16 38 38 H 1.08996 * 109.46542 * 59.99755 * 19 17 16 39 39 H 1.09002 * 109.47148 * 299.99702 * 20 19 17 40 40 H 1.08998 * 109.47355 * 59.99868 * 20 19 17 41 41 H 1.08995 * 109.47526 * 300.00062 * 21 20 19 42 42 H 1.09007 * 109.47245 * 60.00216 * 21 20 19 43 43 H 1.08999 * 115.54401 * 29.41582 * 22 21 20 44 44 H 1.09007 * 117.49981 * 359.97438 * 23 22 21 45 45 H 1.09004 * 117.49892 * 145.01968 * 23 22 21 46 46 H 1.09011 * 117.49724 * 214.98233 * 24 22 21 47 47 H 1.08996 * 117.50027 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1349 2.0662 -1.1799 5 1 1.4368 1.8813 -1.9829 6 6 3.1503 2.9985 -1.3438 7 7 4.1873 2.9914 -0.5334 8 14 3.0448 4.2630 -2.7147 9 1 1.7884 4.0599 -3.4798 10 1 3.0529 5.6283 -2.1304 11 1 4.2090 4.1064 -3.6232 12 6 2.3821 2.0294 1.2624 13 1 2.7202 3.0465 1.0644 14 6 3.5073 1.2405 1.9352 15 6 1.1630 2.0673 2.1861 16 7 0.0471 2.7184 1.4954 17 6 -1.1400 2.8602 2.1176 18 8 -1.2829 2.4532 3.2511 19 6 -2.2898 3.5244 1.4049 20 6 -3.5107 3.5568 2.3264 21 6 -4.6778 4.2317 1.6030 22 6 -5.8990 4.2636 2.5242 23 6 -7.1347 3.4746 2.0868 24 6 -7.1413 5.0040 2.0250 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8971 3.6426 -0.6482 31 1 4.3758 1.2135 1.2771 32 1 3.7783 1.7231 2.8743 33 1 3.1697 0.2232 2.1332 34 1 1.4081 2.6273 3.0885 35 1 0.8795 1.0498 2.4556 36 1 0.1616 3.0441 0.5889 37 1 -2.0104 4.5429 1.1353 38 1 -2.5309 2.9627 0.5024 39 1 -3.7899 2.5381 2.5956 40 1 -3.2698 4.1181 3.2291 41 1 -4.3984 5.2503 1.3340 42 1 -4.9189 3.6706 0.7000 43 1 -5.6817 4.3075 3.5914 44 1 -7.0779 2.9331 1.1424 45 1 -7.7307 2.9999 2.8663 46 1 -7.7416 5.5350 2.7640 47 1 -7.0888 5.4681 1.0402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154735965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = -18.432768 kcal Electronic energy + Delta-G solvation = -23034.019998 eV Core-core repulsion = 19831.386578 eV Total energy + Delta-G solvation = -3202.633420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.30460 -37.84527 -36.89600 -33.74927 -33.51550 -31.88329 -31.06344 -28.39354 -28.00245 -25.19357 -23.94166 -22.60802 -22.16450 -21.59251 -20.56883 -19.61437 -19.15620 -17.01773 -16.48197 -15.78183 -15.56555 -15.35669 -14.73851 -14.54582 -14.33577 -13.83775 -13.61400 -13.04985 -12.71196 -12.56074 -12.31518 -12.23271 -11.87257 -11.84258 -11.70001 -11.67409 -11.45808 -11.10546 -11.07412 -10.94986 -10.82892 -10.78149 -10.66080 -10.35484 -10.28884 -10.07789 -9.99858 -9.63748 -9.43004 -9.28659 -8.52878 -8.32256 -6.67562 -5.89443 -3.38035 3.16581 3.29044 3.39110 3.39571 3.61244 3.84214 4.40543 4.51135 4.75049 4.76165 5.00648 5.14801 5.25173 5.27303 5.33904 5.40136 5.43404 5.64110 5.67292 5.72774 5.79925 5.86173 5.91466 5.96465 6.06289 6.09698 6.21175 6.26727 6.27862 6.39408 6.40683 6.50272 6.55659 6.64279 6.69285 6.83828 6.91224 7.14068 7.16433 7.48947 7.58102 7.76206 8.23228 8.42278 8.82651 9.15146 9.76712 10.34078 11.17087 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.003900 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.134912 B = 7178.217222 C = 7904.153087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.099 0.901 14 C -0.145 4.145 15 C 0.102 3.898 16 N -0.703 5.703 17 C 0.504 3.496 18 O -0.563 6.563 19 C -0.142 4.142 20 C -0.097 4.097 21 C -0.090 4.090 22 C -0.149 4.149 23 C -0.182 4.182 24 C -0.185 4.185 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.410 0.590 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 1.924 3.527 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.290 3.710 18 O -0.443 6.443 19 C -0.182 4.182 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.167 4.167 23 C -0.219 4.219 24 C -0.222 4.222 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.339 1.730 4.303 15.070 hybrid contribution 0.125 0.792 -1.178 1.425 sum -14.213 2.522 3.126 14.770 Atomic orbital electron populations 1.22449 1.00056 0.98968 1.01522 1.20748 0.91685 0.87460 0.98679 1.43884 1.75963 1.08277 1.02284 1.19123 1.08535 1.18140 0.93377 0.91837 1.25160 0.94546 1.01391 0.97823 1.70018 1.07859 1.35908 1.39523 0.86339 0.77613 0.81599 0.81875 1.20195 1.21554 1.21716 1.20488 0.88964 0.99456 0.84185 0.88303 1.22028 1.01165 0.97969 0.99233 1.22129 0.88319 0.96202 0.95718 1.46024 1.11001 1.59136 1.19159 1.20618 0.84123 0.79590 0.86701 1.90638 1.83594 1.51140 1.18966 1.21672 0.94350 1.02123 1.00097 1.21270 0.92397 1.01848 0.98017 1.21226 0.93195 1.00939 0.97428 1.22362 0.89560 1.04601 1.00208 1.23041 1.01780 0.94046 1.03070 1.22972 1.01795 0.94693 1.02744 0.94913 0.92904 0.93491 0.94166 0.94551 0.93612 0.90332 0.94867 0.95176 0.93158 0.93003 0.75315 0.89278 0.89191 0.91267 0.91366 0.91560 0.91807 0.87779 0.88818 0.89082 0.89079 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.87 37.16 0.37 -2.70 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.82 16 3 N -0.58 -13.02 1.85 -165.67 -0.31 -13.33 16 4 C -0.26 -6.45 9.26 -15.06 -0.14 -6.59 16 5 H 0.06 1.58 7.89 -52.48 -0.41 1.16 16 6 C 0.01 0.28 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -23.54 10.61 55.49 0.59 -22.95 16 8 Si 0.90 20.10 29.59 -169.99 -5.03 15.07 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.18 3.78 1.92 -67.93 -0.13 3.65 16 13 H 0.10 2.41 6.03 -51.93 -0.31 2.09 16 14 C -0.14 -2.98 9.05 37.16 0.34 -2.64 16 15 C 0.10 1.98 4.34 -4.04 -0.02 1.96 16 16 N -0.70 -12.65 4.00 -60.29 -0.24 -12.90 16 17 C 0.50 8.67 7.58 -10.98 -0.08 8.59 16 18 O -0.56 -11.48 15.98 5.56 0.09 -11.39 16 19 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 20 C -0.10 -1.18 4.46 -26.73 -0.12 -1.30 16 21 C -0.09 -0.89 5.50 -26.73 -0.15 -1.04 16 22 C -0.15 -1.41 5.73 -90.62 -0.52 -1.93 16 23 C -0.18 -1.58 10.18 -26.70 -0.27 -1.85 16 24 C -0.19 -1.53 10.25 -26.70 -0.27 -1.81 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.98 4.98 -51.93 -0.26 0.72 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 30 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.08 1.83 7.40 -51.93 -0.38 1.45 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.04 7.05 -51.93 -0.37 0.67 16 36 H 0.41 7.51 7.89 -40.82 -0.32 7.19 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 43 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 44 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -27.25 370.07 -9.20 -36.45 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.61 Total: 8.12 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.27 Total: -4.64 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.04 Total: -49.17 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.25 -9.20 -36.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154735965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.015 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds