Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47454 * 2 1 4 4 C 1.36930 * 120.00457 * 275.73724 * 3 2 1 5 5 H 1.08004 * 120.00135 * 33.28129 * 4 3 2 6 6 C 1.38813 * 120.00169 * 213.27745 * 4 3 2 7 7 N 1.31618 * 119.99858 * 17.26763 * 6 4 3 8 8 Si 1.86800 * 120.00021 * 197.26226 * 6 4 3 9 9 H 1.48501 * 109.47044 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47071 * 120.00305 * 8 6 4 11 11 H 1.48503 * 109.46987 * 240.00405 * 8 6 4 12 12 C 1.46500 * 119.99645 * 95.73580 * 3 2 1 13 13 H 1.08996 * 109.47421 * 180.02562 * 12 3 2 14 14 C 1.52998 * 109.47283 * 60.05491 * 12 3 2 15 15 C 1.52998 * 109.47357 * 300.05700 * 12 3 2 16 16 N 1.46506 * 109.46964 * 305.00156 * 15 12 3 17 17 C 1.34780 * 119.99977 * 179.72624 * 16 15 12 18 18 O 1.21281 * 119.99588 * 0.27180 * 17 16 15 19 19 C 1.50701 * 120.00001 * 180.27492 * 17 16 15 20 20 C 1.53001 * 109.46814 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.46587 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.47172 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50194 * 243.75062 * 22 21 20 24 24 C 1.52993 * 117.49950 * 175.08794 * 22 21 20 25 25 H 1.08994 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47188 * 299.99916 * 1 2 3 27 27 H 1.08998 * 109.46905 * 59.99758 * 1 2 3 28 28 H 1.09002 * 109.46816 * 239.99862 * 2 1 3 29 29 H 1.09001 * 109.47348 * 120.00504 * 2 1 3 30 30 H 0.97004 * 119.99902 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46816 * 59.99913 * 14 12 3 32 32 H 1.09006 * 109.47596 * 179.97438 * 14 12 3 33 33 H 1.09002 * 109.47441 * 300.00182 * 14 12 3 34 34 H 1.09001 * 109.47382 * 185.00335 * 15 12 3 35 35 H 1.09005 * 109.47345 * 64.99856 * 15 12 3 36 36 H 0.96998 * 119.99606 * 359.97438 * 16 15 12 37 37 H 1.09001 * 109.46632 * 299.99956 * 19 17 16 38 38 H 1.08996 * 109.46542 * 59.99755 * 19 17 16 39 39 H 1.09002 * 109.47148 * 299.99702 * 20 19 17 40 40 H 1.08998 * 109.47355 * 59.99868 * 20 19 17 41 41 H 1.08995 * 109.47526 * 300.00062 * 21 20 19 42 42 H 1.09007 * 109.47245 * 60.00216 * 21 20 19 43 43 H 1.08999 * 115.54401 * 29.41582 * 22 21 20 44 44 H 1.09007 * 117.49981 * 359.97438 * 23 22 21 45 45 H 1.09004 * 117.49892 * 145.01968 * 23 22 21 46 46 H 1.09011 * 117.49724 * 214.98233 * 24 22 21 47 47 H 1.08996 * 117.50027 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1349 2.0662 -1.1799 5 1 1.4368 1.8813 -1.9829 6 6 3.1503 2.9985 -1.3438 7 7 4.1873 2.9914 -0.5334 8 14 3.0448 4.2630 -2.7147 9 1 1.7884 4.0599 -3.4798 10 1 3.0529 5.6283 -2.1304 11 1 4.2090 4.1064 -3.6232 12 6 2.3821 2.0294 1.2624 13 1 2.7202 3.0465 1.0644 14 6 3.5073 1.2405 1.9352 15 6 1.1630 2.0673 2.1861 16 7 0.0471 2.7184 1.4954 17 6 -1.1400 2.8602 2.1176 18 8 -1.2829 2.4532 3.2511 19 6 -2.2898 3.5244 1.4049 20 6 -3.5107 3.5568 2.3264 21 6 -4.6778 4.2317 1.6030 22 6 -5.8990 4.2636 2.5242 23 6 -7.1347 3.4746 2.0868 24 6 -7.1413 5.0040 2.0250 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8971 3.6426 -0.6482 31 1 4.3758 1.2135 1.2771 32 1 3.7783 1.7231 2.8743 33 1 3.1697 0.2232 2.1332 34 1 1.4081 2.6273 3.0885 35 1 0.8795 1.0498 2.4556 36 1 0.1616 3.0441 0.5889 37 1 -2.0104 4.5429 1.1353 38 1 -2.5309 2.9627 0.5024 39 1 -3.7899 2.5381 2.5956 40 1 -3.2698 4.1181 3.2291 41 1 -4.3984 5.2503 1.3340 42 1 -4.9189 3.6706 0.7000 43 1 -5.6817 4.3075 3.5914 44 1 -7.0779 2.9331 1.1424 45 1 -7.7307 2.9999 2.8663 46 1 -7.7416 5.5350 2.7640 47 1 -7.0888 5.4681 1.0402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154735965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = -30.918508 kcal Electronic energy + Delta-G solvation = -23034.561420 eV Core-core repulsion = 19831.386578 eV Total energy + Delta-G solvation = -3203.174842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72242 -38.75732 -38.39213 -35.18857 -34.66010 -33.69599 -32.67516 -29.96854 -29.23412 -26.63565 -25.76815 -23.51092 -23.23013 -22.93566 -21.33986 -21.07492 -20.76243 -18.74566 -17.82595 -17.07150 -16.85949 -16.49054 -16.30321 -16.07438 -15.37715 -15.15819 -15.01753 -14.48782 -14.30702 -13.96605 -13.82393 -13.50912 -13.29745 -13.20813 -12.89847 -12.80934 -12.69509 -12.60541 -12.53891 -12.36178 -12.33847 -12.00474 -11.93066 -11.84067 -11.73672 -11.34716 -11.15649 -11.09277 -10.73758 -10.66074 -10.42495 -9.83707 -8.51506 -7.80448 -5.30729 1.50157 1.55856 1.62938 1.79708 2.47272 2.56832 2.96007 3.34162 3.65619 3.73826 3.90514 4.06673 4.10306 4.21747 4.25881 4.34556 4.45679 4.47690 4.59002 4.69726 4.75840 4.80558 4.82039 4.82744 4.89736 4.92046 4.94399 4.95579 5.01482 5.07417 5.11927 5.23028 5.27777 5.29648 5.33736 5.37849 5.51080 5.57228 5.63664 5.71412 5.78825 5.88990 6.51720 6.80014 7.25661 7.41969 7.94197 8.47013 9.23665 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.003900 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.134912 B = 7178.217222 C = 7904.153087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.063 0.937 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.292 1.292 11 H -0.302 1.302 12 C 0.183 3.817 13 H 0.070 0.930 14 C -0.136 4.136 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.502 3.498 18 O -0.597 6.597 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.082 4.082 22 C -0.164 4.164 23 C -0.185 4.185 24 C -0.178 4.178 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.248 0.752 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 2.220 2.873 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.081 0.919 6 C -0.231 4.231 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.219 1.219 11 H -0.229 1.229 12 C 0.076 3.924 13 H 0.088 0.912 14 C -0.196 4.196 15 C -0.011 4.011 16 N -0.352 5.352 17 C 0.290 3.710 18 O -0.479 6.479 19 C -0.174 4.174 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.182 4.182 23 C -0.222 4.222 24 C -0.214 4.214 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.247 0.753 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.245 2.017 3.641 16.770 hybrid contribution 0.710 0.637 -0.943 1.341 sum -15.535 2.654 2.698 15.989 Atomic orbital electron populations 1.22253 0.97951 1.00248 1.00997 1.20831 0.93179 0.86244 0.98453 1.44005 1.76114 1.09140 1.02027 1.19295 1.07899 1.17894 0.93907 0.91940 1.25738 0.94490 1.03075 0.99770 1.70153 1.08416 1.36417 1.41069 0.85434 0.77337 0.79386 0.79542 1.19009 1.21938 1.22922 1.20323 0.89889 0.97871 0.84326 0.91205 1.21901 0.99738 0.98777 0.99153 1.21828 0.88008 0.96119 0.95115 1.46019 1.11068 1.59116 1.19046 1.21343 0.84511 0.78818 0.86329 1.90624 1.84097 1.52580 1.20593 1.21715 0.92644 1.02877 1.00208 1.21194 0.92960 1.01026 0.97681 1.21148 0.92297 1.01171 0.97358 1.22353 0.89927 1.06083 0.99880 1.23121 1.01227 0.94519 1.03329 1.23047 1.00667 0.94526 1.03199 0.92753 0.93494 0.93786 0.95099 0.94065 0.94301 0.93309 0.93317 0.94012 0.93319 0.93397 0.75323 0.87318 0.87494 0.92791 0.92657 0.90712 0.91070 0.88462 0.88508 0.88663 0.88304 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.87 71.98 0.71 -4.55 16 2 C 0.14 5.44 5.67 86.38 0.49 5.93 16 3 N -0.59 -26.13 1.85 -678.06 -1.25 -27.39 16 4 C -0.26 -12.63 9.26 84.03 0.78 -11.85 16 5 H 0.06 3.03 7.89 -2.91 -0.02 3.00 16 6 C -0.03 -1.68 4.85 84.86 0.41 -1.27 16 7 N -0.92 -49.08 10.61 21.65 0.23 -48.85 16 8 Si 0.95 41.24 29.59 68.60 2.03 43.27 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.18 7.83 1.92 44.99 0.09 7.92 16 13 H 0.07 3.44 6.03 -2.39 -0.01 3.43 16 14 C -0.14 -5.61 9.05 71.98 0.65 -4.95 16 15 C 0.12 4.41 4.34 86.38 0.37 4.79 16 16 N -0.70 -24.60 4.00 -463.04 -1.85 -26.45 16 17 C 0.50 16.70 7.58 87.66 0.66 17.36 16 18 O -0.60 -24.01 15.98 -3.03 -0.05 -24.06 16 19 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 20 C -0.09 -2.07 4.46 30.59 0.14 -1.93 16 21 C -0.08 -1.45 5.50 30.60 0.17 -1.28 16 22 C -0.16 -2.84 5.73 -10.80 -0.06 -2.90 16 23 C -0.19 -2.86 10.18 30.62 0.31 -2.55 16 24 C -0.18 -2.56 10.25 30.62 0.31 -2.24 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.65 4.98 -2.39 -0.01 1.63 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.04 1.57 6.44 -2.39 -0.02 1.55 16 30 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.05 2.29 7.40 -2.39 -0.02 2.28 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.04 1.58 6.67 -2.39 -0.02 1.56 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.88 7.05 -2.38 -0.02 1.86 16 36 H 0.41 14.54 7.89 -92.71 -0.73 13.80 16 37 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 40 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.16 7.87 -2.38 -0.02 1.14 16 43 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 44 H 0.10 1.43 8.03 -2.38 -0.02 1.41 16 45 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -57.65 370.07 4.51 -53.14 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.19 Total: 30.91 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.21 Total: -0.58 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -2.87 Total: -102.69 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -57.65 4.51 -53.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154735965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.225 kcal (2) G-P(sol) polarization free energy of solvation -57.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds