Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47425 * 2 1 4 4 C 1.36942 * 120.00297 * 88.21062 * 3 2 1 5 5 H 1.07989 * 120.00381 * 206.63360 * 4 3 2 6 6 C 1.38811 * 119.99534 * 26.63808 * 4 3 2 7 7 N 1.31628 * 120.00482 * 40.15293 * 6 4 3 8 8 Si 1.86796 * 120.00005 * 220.15108 * 6 4 3 9 9 H 1.48497 * 109.47426 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46922 * 300.00047 * 8 6 4 11 11 H 1.48505 * 109.47137 * 60.00033 * 8 6 4 12 12 C 1.46500 * 119.99871 * 268.21686 * 3 2 1 13 13 H 1.09005 * 109.47071 * 180.02562 * 12 3 2 14 14 C 1.52996 * 109.47333 * 59.99848 * 12 3 2 15 15 C 1.53002 * 109.46936 * 299.99412 * 12 3 2 16 16 N 1.46500 * 109.47423 * 305.00390 * 15 12 3 17 17 C 1.34774 * 119.99952 * 179.97438 * 16 15 12 18 18 O 1.21279 * 120.00111 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00055 * 179.97438 * 17 16 15 20 20 H 1.09003 * 112.84737 * 321.42844 * 19 17 16 21 21 C 1.53780 * 113.61645 * 190.23071 * 19 17 16 22 22 C 1.53957 * 87.01740 * 220.04704 * 21 19 17 23 23 C 1.53774 * 113.61514 * 92.61809 * 19 17 16 24 24 C 1.53001 * 113.62140 * 254.53278 * 23 19 17 25 25 C 1.53005 * 113.61574 * 25.43894 * 23 19 17 26 26 H 1.08999 * 109.46978 * 300.00406 * 1 2 3 27 27 H 1.09005 * 109.46814 * 59.99974 * 1 2 3 28 28 H 1.08992 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47446 * 239.99497 * 2 1 3 30 30 H 1.09005 * 109.46814 * 120.00026 * 2 1 3 31 31 H 0.97002 * 119.99715 * 5.90486 * 7 6 4 32 32 H 1.08995 * 109.47197 * 59.99932 * 14 12 3 33 33 H 1.09002 * 109.47372 * 180.02562 * 14 12 3 34 34 H 1.09004 * 109.46852 * 299.99866 * 14 12 3 35 35 H 1.08999 * 109.47012 * 65.00256 * 15 12 3 36 36 H 1.08997 * 109.47078 * 184.99599 * 15 12 3 37 37 H 0.97001 * 119.99538 * 359.97438 * 16 15 12 38 38 H 1.09004 * 113.61358 * 334.56513 * 21 19 17 39 39 H 1.08997 * 113.61718 * 105.47037 * 21 19 17 40 40 H 1.08999 * 113.53895 * 270.80633 * 22 21 19 41 41 H 1.09003 * 113.73905 * 139.94788 * 22 21 19 42 42 H 1.09000 * 109.46589 * 59.99776 * 24 23 19 43 43 H 1.09001 * 109.47506 * 180.02562 * 24 23 19 44 44 H 1.09004 * 109.46429 * 300.00116 * 24 23 19 45 45 H 1.09000 * 109.47153 * 61.87580 * 25 23 19 46 46 H 1.08995 * 109.47659 * 181.88181 * 25 23 19 47 47 H 1.09002 * 109.46668 * 301.88495 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2118 2.0391 1.1853 5 1 2.1466 3.1164 1.2219 6 6 2.4916 1.3212 2.3399 7 7 3.3028 0.2857 2.2908 8 14 1.7171 1.8245 3.9635 9 1 2.1734 0.9043 5.0360 10 1 2.1246 3.2130 4.2969 11 1 0.2381 1.7566 3.8485 12 6 2.2998 2.0586 -1.2681 13 1 2.6517 3.0709 -1.0690 14 6 1.0230 2.1180 -2.1089 15 6 3.3775 1.2855 -2.0311 16 7 4.5588 1.1253 -1.1796 17 6 5.6411 0.4708 -1.6450 18 8 5.6373 0.0149 -2.7688 19 6 6.8565 0.3065 -0.7693 20 1 7.0666 1.1902 -0.1667 21 6 8.0860 -0.2356 -1.5173 22 6 8.3681 -1.0911 -0.2687 23 6 6.8633 -1.0037 0.0356 24 6 6.5484 -0.8125 1.5206 25 6 6.0419 -2.1227 -0.6079 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7717 0.0756 1.4680 32 1 0.2554 2.6688 -1.5654 33 1 1.2325 2.6216 -3.0527 34 1 0.6716 1.1056 -2.3080 35 1 2.9932 0.3038 -2.3077 36 1 3.6504 1.8357 -2.9315 37 1 4.5619 1.4903 -0.2809 38 1 7.8356 -0.8224 -2.4011 39 1 8.8473 0.5199 -1.7112 40 1 8.9929 -0.5897 0.4704 41 1 8.7097 -2.1008 -0.4967 42 1 5.5582 -0.3699 1.6280 43 1 6.5715 -1.7789 2.0244 44 1 7.2919 -0.1524 1.9675 45 1 6.4640 -2.3690 -1.5822 46 1 6.0654 -3.0049 0.0318 47 1 5.0109 -1.7913 -0.7320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154756784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = -13.432483 kcal Electronic energy + Delta-G solvation = -24664.504771 eV Core-core repulsion = 21462.088179 eV Total energy + Delta-G solvation = -3202.416591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35148 -37.97818 -36.82242 -33.86407 -32.23150 -30.57562 -30.35741 -28.38145 -27.27014 -27.05186 -24.89255 -23.68010 -22.19253 -21.80276 -20.07091 -19.25360 -18.01093 -17.43075 -16.64899 -15.50820 -15.46669 -14.78580 -14.48891 -14.17525 -13.76252 -13.58945 -13.25576 -13.06504 -12.80594 -12.50991 -12.44918 -12.14265 -11.98217 -11.87398 -11.70592 -11.58480 -11.57644 -11.13182 -11.03870 -10.83763 -10.73741 -10.54229 -10.48091 -10.21883 -10.11591 -10.02516 -9.82254 -9.77592 -9.47395 -9.09648 -8.39548 -8.27171 -6.96815 -6.21772 -3.25996 3.16131 3.45100 3.52862 3.68127 3.87174 4.52640 4.68734 4.81673 4.94453 4.97972 5.05559 5.32856 5.50804 5.54092 5.58366 5.77664 5.80944 5.84386 5.86385 5.99244 6.04004 6.08186 6.09233 6.10316 6.11940 6.25996 6.27199 6.30656 6.36045 6.45615 6.47121 6.52209 6.53958 6.71274 6.73420 6.74482 6.83992 6.92963 7.11427 7.15663 7.34881 8.02498 8.23802 8.50578 8.84804 9.04199 9.76784 10.23337 11.01113 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.007048 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.909729 B = 3971.971727 C = 5087.123718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.582 5.582 4 C -0.371 4.371 5 H 0.053 0.947 6 C -0.006 4.006 7 N -0.880 5.880 8 Si 1.040 2.960 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.295 1.295 12 C 0.156 3.844 13 H 0.068 0.932 14 C -0.156 4.156 15 C 0.104 3.896 16 N -0.705 5.705 17 C 0.522 3.478 18 O -0.563 6.563 19 C -0.131 4.131 20 H 0.104 0.896 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.060 4.060 24 C -0.147 4.147 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.272 0.728 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.412 0.588 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -0.963 -4.421 6.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 N -0.304 5.304 4 C -0.499 4.499 5 H 0.071 0.929 6 C -0.211 4.211 7 N -0.518 5.518 8 Si 0.870 3.130 9 H -0.213 1.213 10 H -0.221 1.221 11 H -0.223 1.223 12 C 0.048 3.952 13 H 0.086 0.914 14 C -0.216 4.216 15 C -0.022 4.022 16 N -0.355 5.355 17 C 0.309 3.691 18 O -0.443 6.443 19 C -0.153 4.153 20 H 0.122 0.878 21 C -0.155 4.155 22 C -0.172 4.172 23 C -0.060 4.060 24 C -0.204 4.204 25 C -0.184 4.184 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.249 0.751 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.045 -1.676 -3.589 6.414 hybrid contribution -0.101 0.766 -1.118 1.359 sum 4.944 -0.910 -4.707 6.886 Atomic orbital electron populations 1.22357 0.99964 0.98827 1.01268 1.20837 0.91562 0.86648 1.00240 1.43982 1.74214 1.11648 1.00567 1.19744 1.50880 0.92504 0.86749 0.92904 1.25490 0.96775 0.97952 1.00903 1.70869 1.20017 1.31728 1.29232 0.83888 0.76769 0.75414 0.76885 1.21349 1.22136 1.22283 1.20725 0.91473 0.95879 0.87129 0.91365 1.22254 0.99230 1.01331 0.98756 1.21901 0.86616 1.00605 0.93096 1.45977 1.14172 1.56289 1.19083 1.20350 0.84331 0.77281 0.87151 1.90598 1.83241 1.50036 1.20410 1.22904 0.94263 0.99796 0.98301 0.87781 1.22786 0.95617 0.99299 0.97794 1.23074 0.96038 1.00241 0.97822 1.21652 0.95269 0.93409 0.95682 1.21933 1.04075 1.01671 0.92762 1.21583 0.99914 0.96982 0.99874 0.92882 0.93814 0.94934 0.95583 0.90750 0.91532 0.92412 0.93816 0.92870 0.92678 0.93044 0.75051 0.88872 0.91617 0.90159 0.91385 0.89147 0.92826 0.93197 0.92419 0.92426 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.98 37.16 0.37 -2.88 16 2 C 0.13 2.90 5.18 -4.04 -0.02 2.88 16 3 N -0.58 -12.73 1.77 -165.66 -0.29 -13.02 16 4 C -0.37 -9.14 8.96 -15.06 -0.13 -9.28 16 5 H 0.05 1.36 8.05 -52.49 -0.42 0.94 16 6 C -0.01 -0.14 4.54 -17.43 -0.08 -0.22 16 7 N -0.88 -22.63 11.70 55.49 0.65 -21.98 16 8 Si 1.04 23.48 30.05 -169.99 -5.11 18.37 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.16 2.97 2.87 -67.93 -0.20 2.77 16 13 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 14 C -0.16 -2.60 8.17 37.16 0.30 -2.30 16 15 C 0.10 1.95 4.92 -4.04 -0.02 1.93 16 16 N -0.70 -13.42 5.39 -60.30 -0.32 -13.75 16 17 C 0.52 9.76 5.72 -10.99 -0.06 9.70 16 18 O -0.56 -11.83 15.72 5.56 0.09 -11.74 16 19 C -0.13 -2.07 3.66 -90.96 -0.33 -2.41 16 20 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 21 C -0.12 -1.62 7.13 -25.83 -0.18 -1.81 16 22 C -0.13 -1.71 7.19 -25.83 -0.19 -1.89 16 23 C -0.06 -0.90 1.31 -153.70 -0.20 -1.11 16 24 C -0.15 -2.39 9.19 37.16 0.34 -2.05 16 25 C -0.13 -2.03 8.19 37.16 0.30 -1.72 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.55 6.53 -51.93 -0.34 0.21 16 30 H 0.07 1.84 5.43 -51.93 -0.28 1.56 16 31 H 0.27 6.84 6.05 -40.82 -0.25 6.59 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.89 6.31 -51.93 -0.33 0.56 16 35 H 0.05 1.10 6.87 -51.93 -0.36 0.74 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 8.38 7.83 -40.82 -0.32 8.06 16 38 H 0.09 1.41 6.89 -51.93 -0.36 1.06 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 41 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.09 1.77 5.78 -51.93 -0.30 1.47 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 45 H 0.06 0.91 7.37 -51.93 -0.38 0.52 16 46 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 47 H 0.06 1.11 7.33 -51.93 -0.38 0.73 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -26.18 358.15 -7.95 -34.13 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.26 Total: 10.97 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.10 Total: -8.38 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.03 Total: -48.75 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.11 Total: 18.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.18 -7.95 -34.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154756784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.701 kcal (2) G-P(sol) polarization free energy of solvation -26.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds