Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47216 * 2 1 4 4 C 1.36935 * 120.00033 * 84.06052 * 3 2 1 5 5 H 1.07999 * 120.00059 * 33.23600 * 4 3 2 6 6 C 1.38812 * 119.99857 * 213.22887 * 4 3 2 7 7 N 1.31625 * 120.00237 * 17.79912 * 6 4 3 8 8 Si 1.86799 * 119.99960 * 197.51872 * 6 4 3 9 9 H 1.48494 * 109.47155 * 60.00587 * 8 6 4 10 10 H 1.48501 * 109.47258 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47165 * 300.00205 * 8 6 4 12 12 C 1.46501 * 119.99884 * 264.06442 * 3 2 1 13 13 H 1.08992 * 109.47237 * 183.49861 * 12 3 2 14 14 C 1.52994 * 109.47157 * 63.49567 * 12 3 2 15 15 C 1.53003 * 109.46825 * 303.49817 * 12 3 2 16 16 N 1.46494 * 109.47028 * 304.99499 * 15 12 3 17 17 C 1.34781 * 120.00287 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99429 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00333 * 180.02562 * 17 16 15 20 20 H 1.08997 * 112.84937 * 25.86024 * 19 17 16 21 21 C 1.53784 * 113.61135 * 157.05490 * 19 17 16 22 22 C 1.53782 * 87.07706 * 139.98253 * 21 19 17 23 23 C 1.53784 * 113.61300 * 254.66048 * 19 17 16 24 24 C 1.52999 * 113.61620 * 334.56771 * 23 19 17 25 25 C 1.52999 * 113.61199 * 105.47310 * 23 19 17 26 26 H 1.09004 * 109.47473 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46948 * 300.00171 * 1 2 3 28 28 H 1.08997 * 109.47024 * 59.99772 * 1 2 3 29 29 H 1.09005 * 109.46948 * 239.99829 * 2 1 3 30 30 H 1.09000 * 109.47168 * 119.99715 * 2 1 3 31 31 H 0.96993 * 120.00064 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.47197 * 179.97438 * 14 12 3 33 33 H 1.09001 * 109.47449 * 300.00075 * 14 12 3 34 34 H 1.08997 * 109.47575 * 60.00275 * 14 12 3 35 35 H 1.08993 * 109.47292 * 65.00082 * 15 12 3 36 36 H 1.09005 * 109.46906 * 184.99941 * 15 12 3 37 37 H 0.97000 * 120.00191 * 0.02562 * 16 15 12 38 38 H 1.09002 * 113.60905 * 254.52866 * 21 19 17 39 39 H 1.08997 * 113.61452 * 25.34738 * 21 19 17 40 40 H 1.08995 * 113.61586 * 89.11616 * 22 21 19 41 41 H 1.08999 * 113.60903 * 219.92912 * 22 21 19 42 42 H 1.09002 * 109.47201 * 65.38619 * 24 23 19 43 43 H 1.08998 * 109.46824 * 185.38307 * 24 23 19 44 44 H 1.08999 * 109.47088 * 305.38682 * 24 23 19 45 45 H 1.09002 * 109.47249 * 59.99726 * 25 23 19 46 46 H 1.08997 * 109.47335 * 179.97438 * 25 23 19 47 47 H 1.09000 * 109.47376 * 299.99634 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1309 2.0676 1.1795 5 1 2.3920 1.5431 2.0868 6 6 1.9095 3.4376 1.2091 7 7 1.2639 4.0215 0.2217 8 14 2.5211 4.4516 2.6538 9 1 3.9968 4.3244 2.7584 10 1 2.1602 5.8770 2.4462 11 1 1.8918 3.9594 3.9057 12 6 2.3862 2.0280 -1.2620 13 1 2.7824 3.0228 -1.0584 14 6 1.1493 2.1445 -2.1549 15 6 3.4513 1.1905 -1.9727 16 7 4.5872 0.9787 -1.0722 17 6 5.6513 0.2628 -1.4865 18 8 5.6687 -0.2056 -2.6051 19 6 6.8195 0.0443 -0.5599 20 1 6.5404 0.0955 0.4925 21 6 7.6638 -1.1913 -0.9139 22 6 8.9020 -0.3451 -0.5737 23 6 8.0524 0.8933 -0.9122 24 6 8.1176 1.2969 -2.3866 25 6 8.2775 2.0710 0.0382 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.1089 4.9787 0.2426 32 1 1.4230 2.6262 -3.0937 33 1 0.7532 1.1497 -2.3585 34 1 0.3905 2.7411 -1.6486 35 1 3.0271 0.2272 -2.2555 36 1 3.7892 1.7151 -2.8665 37 1 4.5731 1.3529 -0.1774 38 1 7.5109 -2.0327 -0.2380 39 1 7.6027 -1.4756 -1.9643 40 1 9.1934 -0.3996 0.4751 41 1 9.7388 -0.5027 -1.2542 42 1 7.2858 1.9621 -2.6184 43 1 9.0589 1.8109 -2.5812 44 1 8.0547 0.4054 -3.0105 45 1 8.4188 1.6975 1.0524 46 1 9.1643 2.6238 -0.2718 47 1 7.4101 2.7305 0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154756785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -15.779071 kcal Electronic energy + Delta-G solvation = -24084.243838 eV Core-core repulsion = 20881.725491 eV Total energy + Delta-G solvation = -3202.518347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47360 -37.95116 -36.64141 -33.64975 -31.84593 -30.84524 -30.64271 -28.31739 -27.35459 -27.20560 -24.71436 -23.84899 -22.39002 -21.58554 -20.10691 -19.33440 -18.07892 -17.07282 -16.55984 -15.46748 -15.15212 -14.75721 -14.70409 -14.37856 -13.95857 -13.45772 -13.40364 -13.13886 -12.78804 -12.65494 -12.27846 -12.13381 -11.96358 -11.81893 -11.55659 -11.44508 -11.37459 -11.33239 -11.18690 -11.03993 -10.80769 -10.75580 -10.44497 -10.32971 -10.28205 -10.03325 -9.93622 -9.58908 -9.46028 -9.11717 -8.53061 -8.31827 -6.67879 -5.87662 -3.34976 3.09943 3.31480 3.38346 3.39503 3.88490 4.42417 4.45480 4.65868 4.79534 4.84655 5.25424 5.28277 5.38620 5.52468 5.55158 5.62901 5.66394 5.75408 5.79426 5.93047 5.94824 5.98194 6.05562 6.12950 6.15279 6.18899 6.28066 6.36523 6.42201 6.47546 6.52895 6.56225 6.57381 6.72494 6.77701 6.80211 7.00485 7.16423 7.29278 7.50101 7.63119 7.79001 8.25578 8.43410 8.84596 9.16562 9.77901 10.35395 11.19197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.005800 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.865703 B = 4826.702815 C = 5712.717735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 N -0.581 5.581 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.182 3.818 13 H 0.094 0.906 14 C -0.146 4.146 15 C 0.101 3.899 16 N -0.703 5.703 17 C 0.518 3.482 18 O -0.560 6.560 19 C -0.132 4.132 20 H 0.105 0.895 21 C -0.118 4.118 22 C -0.132 4.132 23 C -0.066 4.066 24 C -0.127 4.127 25 C -0.139 4.139 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.254 0.746 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -5.440 -1.585 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 N -0.303 5.303 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.074 3.926 13 H 0.111 0.889 14 C -0.205 4.205 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.304 3.696 18 O -0.440 6.440 19 C -0.153 4.153 20 H 0.123 0.877 21 C -0.156 4.156 22 C -0.169 4.169 23 C -0.066 4.066 24 C -0.184 4.184 25 C -0.197 4.197 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.922 -5.574 -2.388 12.492 hybrid contribution -0.081 0.878 1.259 1.537 sum 10.841 -4.696 -1.129 11.868 Atomic orbital electron populations 1.22380 0.99793 0.98239 1.02099 1.20788 0.91901 0.87653 0.97980 1.43925 1.73733 1.09741 1.02895 1.19047 1.41895 0.90273 0.88035 0.91945 1.25133 0.97952 0.98420 0.97250 1.69995 1.40276 1.10065 1.32924 0.86491 0.78883 0.79401 0.82648 1.20959 1.21748 1.20951 1.20418 0.90867 0.96104 0.85200 0.88853 1.22156 1.00764 0.99652 0.97933 1.22072 0.87461 1.00318 0.92577 1.46024 1.17372 1.53073 1.18795 1.20317 0.83334 0.78161 0.87812 1.90607 1.81058 1.51177 1.21150 1.22895 0.93062 0.99279 1.00066 0.87698 1.22769 0.94582 0.95361 1.02860 1.23037 0.96825 0.95661 1.01404 1.21717 0.94244 0.94151 0.96518 1.21601 1.01286 1.02017 0.93543 1.21784 1.01934 0.97530 0.98418 0.95460 0.92907 0.93183 0.94533 0.94694 0.93564 0.95320 0.95158 0.89782 0.92998 0.93046 0.75445 0.91397 0.88741 0.90082 0.91270 0.92399 0.92746 0.91434 0.92383 0.92517 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 10.02 37.16 0.37 -2.88 16 2 C 0.14 2.91 5.72 -4.04 -0.02 2.88 16 3 N -0.58 -12.98 1.82 -165.67 -0.30 -13.28 16 4 C -0.26 -6.48 9.46 -15.06 -0.14 -6.63 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.14 16 6 C 0.01 0.32 4.82 -17.43 -0.08 0.24 16 7 N -0.89 -23.52 10.32 55.49 0.57 -22.95 16 8 Si 0.90 20.26 29.59 -169.99 -5.03 15.23 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.18 3.89 1.92 -67.93 -0.13 3.76 16 13 H 0.09 2.27 6.24 -51.93 -0.32 1.95 16 14 C -0.15 -3.04 8.26 37.15 0.31 -2.73 16 15 C 0.10 1.97 4.86 -4.04 -0.02 1.95 16 16 N -0.70 -12.78 5.39 -60.30 -0.32 -13.10 16 17 C 0.52 8.97 6.15 -10.98 -0.07 8.90 16 18 O -0.56 -11.15 14.83 5.55 0.08 -11.07 16 19 C -0.13 -1.81 3.65 -90.96 -0.33 -2.15 16 20 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 21 C -0.12 -1.45 7.18 -25.92 -0.19 -1.63 16 22 C -0.13 -1.38 7.22 -25.83 -0.19 -1.57 16 23 C -0.07 -0.80 1.31 -153.61 -0.20 -1.00 16 24 C -0.13 -1.66 7.77 37.16 0.29 -1.37 16 25 C -0.14 -1.58 9.20 37.16 0.34 -1.24 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.01 6.06 -51.93 -0.31 0.69 16 29 H 0.04 0.72 6.36 -51.93 -0.33 0.39 16 30 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.03 0.59 6.52 -51.93 -0.34 0.25 16 34 H 0.08 2.00 7.01 -51.93 -0.36 1.63 16 35 H 0.05 1.04 6.76 -51.93 -0.35 0.69 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.41 7.59 8.08 -40.82 -0.33 7.26 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.30 6.85 -51.93 -0.36 0.94 16 40 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 41 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.06 0.86 7.67 -51.93 -0.40 0.46 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.94 6.77 -51.93 -0.35 0.59 16 45 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -26.68 360.65 -8.11 -34.79 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.48 Total: 8.42 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.06 Total: -3.46 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.05 Total: -49.33 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.68 -8.11 -34.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154756785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.006 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds