Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46881 * 2 1 4 4 C 1.36936 * 120.00142 * 274.03914 * 3 2 1 5 5 H 1.08000 * 120.00334 * 174.70404 * 4 3 2 6 6 C 1.38815 * 119.99754 * 354.70730 * 4 3 2 7 7 N 1.31615 * 120.00003 * 31.38274 * 6 4 3 8 8 Si 1.86805 * 120.00054 * 211.38530 * 6 4 3 9 9 H 1.48496 * 109.47326 * 84.99267 * 8 6 4 10 10 H 1.48496 * 109.47021 * 204.99860 * 8 6 4 11 11 H 1.48501 * 109.46722 * 324.99361 * 8 6 4 12 12 C 1.46500 * 120.00286 * 94.04028 * 3 2 1 13 13 H 1.08992 * 109.47605 * 179.97438 * 12 3 2 14 14 C 1.53009 * 109.46934 * 59.99612 * 12 3 2 15 15 C 1.53001 * 109.46937 * 300.00204 * 12 3 2 16 16 N 1.46496 * 109.46886 * 304.99791 * 15 12 3 17 17 C 1.34775 * 119.99953 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00411 * 180.27394 * 17 16 15 20 20 C 1.53005 * 109.46998 * 299.72699 * 19 17 16 21 21 C 1.53004 * 109.47067 * 59.71972 * 19 17 16 22 22 C 1.52996 * 109.47778 * 179.72486 * 19 17 16 23 23 C 1.52998 * 117.50034 * 248.75086 * 22 19 17 24 24 C 1.52997 * 117.50522 * 180.08894 * 22 19 17 25 25 H 1.09000 * 109.47390 * 300.00318 * 1 2 3 26 26 H 1.09008 * 109.47015 * 60.00504 * 1 2 3 27 27 H 1.08997 * 109.46812 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47589 * 240.00441 * 2 1 3 29 29 H 1.08999 * 109.47242 * 119.99571 * 2 1 3 30 30 H 0.97001 * 120.00147 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46832 * 180.02562 * 14 12 3 32 32 H 1.08992 * 109.47173 * 300.00508 * 14 12 3 33 33 H 1.09006 * 109.46746 * 60.00118 * 14 12 3 34 34 H 1.08998 * 109.46737 * 184.99399 * 15 12 3 35 35 H 1.09001 * 109.47213 * 65.00163 * 15 12 3 36 36 H 0.96999 * 120.00184 * 359.97438 * 16 15 12 37 37 H 1.08996 * 109.46992 * 59.99183 * 20 19 17 38 38 H 1.09001 * 109.47010 * 179.97438 * 20 19 17 39 39 H 1.09008 * 109.46960 * 299.99705 * 20 19 17 40 40 H 1.08999 * 109.46450 * 60.00576 * 21 19 17 41 41 H 1.09001 * 109.47212 * 180.02562 * 21 19 17 42 42 H 1.09003 * 109.47331 * 300.00558 * 21 19 17 43 43 H 1.09005 * 115.54945 * 34.41149 * 22 19 17 44 44 H 1.09005 * 117.49446 * 359.97438 * 23 22 19 45 45 H 1.09000 * 117.50289 * 145.01416 * 23 22 19 46 46 H 1.08997 * 117.49804 * 214.98497 * 24 22 19 47 47 H 1.09000 * 117.49614 * 359.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1677 2.0547 -1.1829 5 1 2.4452 3.0984 -1.1789 6 6 1.9625 1.3958 -2.3874 7 7 1.0861 0.4166 -2.4608 8 14 2.9303 1.8987 -3.9039 9 1 4.2410 1.2007 -3.9087 10 1 2.1677 1.5283 -5.1231 11 1 3.1515 3.3670 -3.8855 12 6 2.3467 2.0422 1.2655 13 1 2.6911 3.0570 1.0669 14 6 3.4517 1.2594 1.9779 15 6 1.1019 2.0901 2.1539 16 7 0.0067 2.7348 1.4253 17 6 -1.1957 2.8891 2.0143 18 8 -1.3710 2.4937 3.1474 19 6 -2.3243 3.5466 1.2626 20 6 -1.9202 4.9720 0.8804 21 6 -2.6279 2.7454 -0.0050 22 6 -3.5705 3.5903 2.1491 23 6 -4.7532 2.7059 1.7492 24 6 -4.8336 4.2229 1.5618 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9424 -0.0436 -3.3025 31 1 3.6957 1.7509 2.9197 32 1 3.1078 0.2444 2.1765 33 1 4.3385 1.2252 1.3450 34 1 1.3220 2.6591 3.0572 35 1 0.8101 1.0757 2.4256 36 1 0.1470 3.0513 0.5192 37 1 -1.0323 4.9409 0.2489 38 1 -2.7363 5.4475 0.3364 39 1 -1.7038 5.5429 1.7835 40 1 -2.9157 1.7301 0.2673 41 1 -3.4438 3.2213 -0.5489 42 1 -1.7400 2.7144 -0.6366 43 1 -3.3852 3.7316 3.2140 44 1 -4.6436 2.0933 0.8543 45 1 -5.3463 2.2658 2.5509 46 1 -5.4794 4.7804 2.2402 47 1 -4.7767 4.6085 0.5438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154757798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = 8.373267 kcal Electronic energy + Delta-G solvation = -24508.701088 eV Core-core repulsion = 21307.230065 eV Total energy + Delta-G solvation = -3201.471023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02479 -37.73951 -36.69670 -33.92268 -33.03687 -31.70451 -30.14914 -28.41928 -27.26263 -25.80686 -24.13692 -23.70583 -22.14001 -21.81161 -20.75665 -19.18418 -18.17884 -16.94908 -16.83803 -15.82785 -15.37805 -15.01547 -14.55360 -14.28429 -13.97666 -13.68061 -13.00802 -12.81109 -12.63531 -12.57985 -12.39316 -12.11996 -11.93445 -11.88363 -11.78729 -11.46392 -11.40759 -11.12236 -10.91344 -10.78401 -10.73614 -10.60653 -10.52632 -10.30485 -10.22936 -9.86017 -9.82565 -9.62659 -9.28161 -9.12231 -8.36454 -8.22614 -7.02331 -5.87027 -3.06989 3.18547 3.36737 3.45574 3.48281 3.70946 4.01684 4.45228 4.71308 4.97098 5.02761 5.16290 5.19777 5.26525 5.39424 5.45734 5.56767 5.60941 5.68597 5.77341 5.90573 5.93572 5.99698 6.01422 6.09510 6.11464 6.16218 6.20711 6.31436 6.33245 6.38645 6.41678 6.55880 6.64691 6.73349 6.87894 7.01248 7.09491 7.18432 7.24214 7.65604 7.81926 8.12485 8.21857 8.28809 8.83298 9.19154 9.83289 10.29046 11.16292 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.005882 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.217269 B = 4758.789103 C = 5482.186299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.262 4.262 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.879 5.879 8 Si 0.878 3.122 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.067 0.933 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.699 5.699 17 C 0.522 3.478 18 O -0.560 6.560 19 C -0.050 4.050 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.182 4.182 24 C -0.181 4.181 25 H 0.022 0.978 26 H 0.088 0.912 27 H 0.012 0.988 28 H 0.083 0.917 29 H 0.005 0.995 30 H 0.252 0.748 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.411 0.589 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 5.840 5.911 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.315 5.315 4 C -0.389 4.389 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.209 1.209 12 C 0.052 3.948 13 H 0.085 0.915 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.308 3.692 18 O -0.439 6.439 19 C -0.053 4.053 20 C -0.194 4.194 21 C -0.200 4.200 22 C -0.143 4.143 23 C -0.219 4.219 24 C -0.218 4.218 25 H 0.041 0.959 26 H 0.107 0.893 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.262 5.455 6.546 10.574 hybrid contribution 0.521 0.223 -1.275 1.396 sum -5.741 5.677 5.270 9.642 Atomic orbital electron populations 1.22433 0.99118 0.97947 1.01451 1.20886 0.92568 0.84510 0.97975 1.44222 1.75665 1.11203 1.00430 1.19185 1.41670 0.94774 0.83310 0.90731 1.24675 0.98740 0.98259 0.97104 1.70276 1.30359 1.26600 1.25102 0.86661 0.81356 0.77935 0.83251 1.21756 1.22230 1.20874 1.20546 0.91242 0.96333 0.86637 0.91491 1.22185 0.99706 1.00627 0.99225 1.21978 0.88330 0.97223 0.94574 1.45870 1.10573 1.59468 1.19035 1.20288 0.83491 0.78995 0.86471 1.90615 1.82889 1.51229 1.19186 1.20215 0.92841 0.96604 0.95668 1.21815 1.01942 0.94051 1.01586 1.21987 1.02881 0.99747 0.95415 1.22031 0.87881 1.04669 0.99715 1.23124 1.01875 0.93255 1.03622 1.22962 1.00826 0.95920 1.02072 0.95937 0.89321 0.96935 0.89883 0.97643 0.93770 0.93701 0.93004 0.92317 0.93079 0.92190 0.75218 0.91740 0.91685 0.92392 0.91829 0.92060 0.90709 0.87071 0.88100 0.89247 0.89163 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.27 37.16 0.34 -3.01 16 2 C 0.17 3.76 5.01 -4.04 -0.02 3.74 16 3 N -0.59 -12.97 1.92 -165.66 -0.32 -13.29 16 4 C -0.26 -6.31 9.38 -15.06 -0.14 -6.45 16 5 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 6 C 0.01 0.26 4.97 -17.43 -0.09 0.18 16 7 N -0.88 -22.74 8.40 55.49 0.47 -22.27 16 8 Si 0.88 20.23 29.65 -169.99 -5.04 15.19 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.30 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.16 2.98 2.87 -67.93 -0.19 2.79 16 13 H 0.07 1.22 7.78 -51.93 -0.40 0.82 16 14 C -0.16 -2.60 9.18 37.16 0.34 -2.26 16 15 C 0.11 1.90 4.32 -4.04 -0.02 1.88 16 16 N -0.70 -12.49 3.77 -60.30 -0.23 -12.72 16 17 C 0.52 9.35 6.23 -10.99 -0.07 9.28 16 18 O -0.56 -11.70 15.65 5.55 0.09 -11.62 16 19 C -0.05 -0.73 0.72 -155.66 -0.11 -0.84 16 20 C -0.14 -1.72 8.21 37.16 0.31 -1.41 16 21 C -0.14 -2.09 6.96 37.16 0.26 -1.84 16 22 C -0.12 -1.71 4.75 -90.62 -0.43 -2.14 16 23 C -0.18 -2.26 9.57 -26.70 -0.26 -2.52 16 24 C -0.18 -2.00 9.39 -26.70 -0.25 -2.25 16 25 H 0.02 0.48 4.84 -51.93 -0.25 0.23 16 26 H 0.09 2.17 6.30 -51.92 -0.33 1.85 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 2.14 5.84 -51.93 -0.30 1.83 16 29 H 0.01 0.11 6.43 -51.93 -0.33 -0.22 16 30 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 36 H 0.41 7.57 6.73 -40.82 -0.27 7.30 16 37 H 0.06 0.83 7.57 -51.93 -0.39 0.44 16 38 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.06 0.99 6.97 -51.93 -0.36 0.63 16 41 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 42 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 43 H 0.11 1.69 7.47 -51.93 -0.39 1.31 16 44 H 0.10 1.26 5.85 -51.93 -0.30 0.96 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.97 7.07 -51.93 -0.37 0.60 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -26.64 353.04 -8.10 -34.74 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.06 Total: 9.50 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.33 Total: -4.86 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.08 Total: -48.28 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.04 Total: 15.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.64 -8.10 -34.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154757798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.108 kcal (2) G-P(sol) polarization free energy of solvation -26.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds