Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46714 * 2 1 4 4 C 1.36928 * 119.99881 * 275.31841 * 3 2 1 5 5 H 1.08003 * 120.00462 * 36.92827 * 4 3 2 6 6 C 1.38812 * 120.00106 * 216.91793 * 4 3 2 7 7 N 1.31621 * 119.99945 * 9.56351 * 6 4 3 8 8 Si 1.86805 * 120.00290 * 189.55855 * 6 4 3 9 9 H 1.48500 * 109.46788 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47111 * 120.00365 * 8 6 4 11 11 H 1.48497 * 109.47407 * 240.00511 * 8 6 4 12 12 C 1.46501 * 119.99902 * 95.33124 * 3 2 1 13 13 H 1.08996 * 109.47220 * 176.85275 * 12 3 2 14 14 C 1.53000 * 109.47475 * 56.84978 * 12 3 2 15 15 C 1.53002 * 109.46815 * 296.85151 * 12 3 2 16 16 N 1.46503 * 109.46899 * 305.00087 * 15 12 3 17 17 C 1.34778 * 119.99990 * 179.97438 * 16 15 12 18 18 O 1.21290 * 119.99851 * 5.19131 * 17 16 15 19 19 C 1.50702 * 120.00139 * 185.18321 * 17 16 15 20 20 C 1.52997 * 115.54794 * 81.69525 * 19 17 16 21 21 C 1.52998 * 109.47374 * 40.27631 * 20 19 17 22 22 C 1.52999 * 109.46982 * 160.27738 * 20 19 17 23 23 C 1.52998 * 117.49628 * 296.02477 * 19 17 16 24 24 C 1.53000 * 60.03343 * 252.49772 * 23 19 17 25 25 H 1.08999 * 109.47522 * 60.00076 * 1 2 3 26 26 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47433 * 299.99984 * 1 2 3 28 28 H 1.08996 * 109.46831 * 239.99678 * 2 1 3 29 29 H 1.09002 * 109.46644 * 119.99754 * 2 1 3 30 30 H 0.96999 * 119.99931 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47039 * 59.99854 * 14 12 3 32 32 H 1.09007 * 109.47010 * 180.02562 * 14 12 3 33 33 H 1.09009 * 109.47007 * 300.00035 * 14 12 3 34 34 H 1.08998 * 109.47541 * 185.00391 * 15 12 3 35 35 H 1.09001 * 109.47503 * 65.00002 * 15 12 3 36 36 H 0.96997 * 120.00213 * 0.02562 * 16 15 12 37 37 H 1.09002 * 109.47190 * 280.27412 * 20 19 17 38 38 H 1.09004 * 109.47172 * 64.55131 * 21 20 19 39 39 H 1.08992 * 109.47301 * 184.55585 * 21 20 19 40 40 H 1.09007 * 109.47208 * 304.56027 * 21 20 19 41 41 H 1.08999 * 109.47059 * 59.99882 * 22 20 19 42 42 H 1.09004 * 109.47090 * 180.02562 * 22 20 19 43 43 H 1.09002 * 109.46891 * 299.99856 * 22 20 19 44 44 H 1.08996 * 117.50306 * 0.02562 * 23 19 17 45 45 H 1.09004 * 117.49774 * 144.99883 * 23 19 17 46 46 H 1.09004 * 117.49969 * 107.49768 * 24 23 19 47 47 H 1.09003 * 117.50127 * 252.52674 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1428 2.0634 -1.1807 5 1 1.4159 1.9199 -1.9666 6 6 3.2032 2.9394 -1.3677 7 7 4.1879 2.9764 -0.4952 8 14 3.2326 4.0658 -2.8577 9 1 2.0179 3.8318 -3.6791 10 1 3.2606 5.4809 -2.4080 11 1 4.4425 3.7806 -3.6700 12 6 2.3735 2.0326 1.2633 13 1 2.7658 3.0291 1.0605 14 6 3.4378 1.2023 1.9836 15 6 1.1295 2.1442 2.1469 16 7 0.0683 2.8362 1.4110 17 6 -1.1277 3.0495 1.9946 18 8 -1.2957 2.7538 3.1589 19 6 -2.2562 3.6554 1.2006 20 6 -3.0383 2.6818 0.3168 21 6 -3.2412 1.3632 1.0659 22 6 -4.4004 3.2874 -0.0278 23 6 -2.0699 5.0839 0.6852 24 6 -3.0327 4.8083 1.8419 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.9291 3.5883 -0.6261 31 1 4.3240 1.1227 1.3540 32 1 3.7018 1.6868 2.9237 33 1 3.0455 0.2057 2.1864 34 1 1.3731 2.7070 3.0480 35 1 0.7889 1.1462 2.4228 36 1 0.2262 3.1401 0.5036 37 1 -2.4806 2.4961 -0.6012 38 1 -3.8673 1.5353 1.9414 39 1 -3.7266 0.6426 0.4079 40 1 -2.2739 0.9725 1.3822 41 1 -4.2559 4.2267 -0.5614 42 1 -4.9579 2.5935 -0.6571 43 1 -4.9581 3.4731 0.8902 44 1 -1.1310 5.5852 0.9200 45 1 -2.5045 5.3301 -0.2836 46 1 -2.7273 5.1284 2.8381 47 1 -4.1008 4.8727 1.6340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155141039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -7.649276 kcal Electronic energy + Delta-G solvation = -24578.059372 eV Core-core repulsion = 21375.893559 eV Total energy + Delta-G solvation = -3202.165813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00937 -37.54844 -36.53555 -33.53341 -32.95919 -31.87824 -30.98334 -28.18718 -27.40097 -25.85755 -23.96379 -23.60873 -22.43620 -21.70997 -20.77801 -19.28275 -18.43104 -17.00892 -16.48364 -15.69567 -15.46516 -14.81767 -14.59646 -14.44003 -13.96555 -13.62658 -13.28142 -12.81815 -12.70909 -12.59246 -12.33506 -12.20454 -11.96321 -11.78849 -11.68023 -11.49722 -11.34258 -11.11966 -11.06127 -10.95651 -10.93999 -10.80839 -10.66980 -10.26246 -10.21448 -10.08837 -9.74806 -9.60440 -9.44108 -9.16476 -8.53291 -8.29987 -6.59606 -5.87630 -3.43523 3.12751 3.29037 3.38796 3.39119 3.65135 3.93814 4.40194 4.66750 4.90937 4.95945 5.11678 5.24792 5.29474 5.33662 5.41072 5.64135 5.69873 5.70852 5.86043 5.90305 5.93886 5.98526 6.00759 6.11690 6.19148 6.21642 6.24051 6.28258 6.34665 6.39957 6.43656 6.52020 6.57485 6.65598 6.71767 6.85035 6.93252 7.16002 7.18699 7.50586 7.62084 7.74750 8.28084 8.46913 8.85257 9.17406 9.76688 10.35445 11.17786 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.006502 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.173405 B = 4305.136243 C = 4861.587212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.581 5.581 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.173 3.827 13 H 0.106 0.894 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.695 5.695 17 C 0.545 3.455 18 O -0.559 6.559 19 C -0.145 4.145 20 C -0.049 4.049 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.166 4.166 24 C -0.154 4.154 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.412 0.588 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 0.905 1.531 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.302 5.302 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.065 3.935 13 H 0.124 0.876 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.345 5.345 17 C 0.330 3.670 18 O -0.438 6.438 19 C -0.148 4.148 20 C -0.068 4.068 21 C -0.203 4.203 22 C -0.205 4.205 23 C -0.203 4.203 24 C -0.191 4.191 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.516 0.760 2.331 11.774 hybrid contribution 0.264 0.691 -1.207 1.416 sum -11.252 1.451 1.124 11.401 Atomic orbital electron populations 1.22474 1.00029 0.98851 1.01513 1.20780 0.91665 0.87569 0.98676 1.43813 1.76142 1.08132 1.02151 1.19117 1.05314 1.20771 0.93700 0.91994 1.25288 0.94841 1.01173 0.97439 1.69932 1.09259 1.38359 1.36103 0.86305 0.77620 0.80472 0.82847 1.20173 1.21599 1.21658 1.20573 0.88929 0.99697 0.84272 0.87597 1.21984 1.01113 0.98060 0.98996 1.22187 0.89701 0.95346 0.95207 1.45944 1.11888 1.57543 1.19108 1.19392 0.82813 0.78303 0.86537 1.90636 1.83007 1.53284 1.16866 1.21549 0.99415 0.90971 1.02862 1.20480 0.95213 0.93784 0.97286 1.21850 1.02437 0.96040 0.99959 1.21970 0.96422 1.00766 1.01385 1.23097 1.01746 0.96517 0.98972 1.23101 0.98146 0.99924 0.97937 0.93454 0.94977 0.92906 0.94168 0.94532 0.93569 0.90756 0.94780 0.95129 0.93226 0.93157 0.75134 0.90179 0.92618 0.92770 0.92074 0.92473 0.92463 0.92230 0.88396 0.88052 0.88642 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.94 37.16 0.37 -2.64 16 2 C 0.14 2.80 5.77 -4.04 -0.02 2.77 16 3 N -0.58 -12.91 1.88 -165.66 -0.31 -13.22 16 4 C -0.26 -6.35 9.06 -15.06 -0.14 -6.48 16 5 H 0.06 1.53 7.85 -52.48 -0.41 1.12 16 6 C 0.01 0.32 5.04 -17.43 -0.09 0.23 16 7 N -0.89 -23.55 10.62 55.49 0.59 -22.96 16 8 Si 0.90 20.19 29.56 -169.99 -5.03 15.17 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.17 3.70 1.93 -67.93 -0.13 3.57 16 13 H 0.11 2.60 5.90 -51.93 -0.31 2.29 16 14 C -0.14 -2.91 9.02 37.16 0.34 -2.57 16 15 C 0.10 1.99 4.36 -4.04 -0.02 1.97 16 16 N -0.70 -12.90 4.31 -60.29 -0.26 -13.16 16 17 C 0.54 9.82 5.23 -10.98 -0.06 9.76 16 18 O -0.56 -11.78 17.03 5.55 0.09 -11.69 16 19 C -0.14 -2.10 2.17 -155.62 -0.34 -2.43 16 20 C -0.05 -0.63 3.14 -90.62 -0.28 -0.92 16 21 C -0.15 -1.99 8.82 37.16 0.33 -1.66 16 22 C -0.15 -1.52 7.87 37.16 0.29 -1.23 16 23 C -0.17 -2.11 9.58 -26.73 -0.26 -2.37 16 24 C -0.15 -1.94 9.31 -26.69 -0.25 -2.19 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.97 3.88 -51.92 -0.20 0.76 16 28 H 0.04 0.83 8.08 -51.93 -0.42 0.42 16 29 H 0.04 0.71 6.27 -51.93 -0.33 0.39 16 30 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.07 1.71 7.67 -51.93 -0.40 1.31 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.58 6.55 -51.92 -0.34 0.24 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 1.01 6.92 -51.93 -0.36 0.65 16 36 H 0.41 7.92 7.72 -40.82 -0.32 7.60 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.98 5.57 -51.92 -0.29 0.69 16 41 H 0.06 0.54 6.93 -51.93 -0.36 0.18 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.59 6.70 -51.93 -0.35 0.24 16 44 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.10 1.11 7.23 -51.93 -0.38 0.74 16 46 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.10 1.10 5.89 -51.93 -0.31 0.79 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -26.92 358.86 -7.88 -34.80 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -8.12 Total: 9.85 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.25 Total: -4.19 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.02 Total: -49.35 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.92 -7.88 -34.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155141039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -26.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds