Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47152 * 2 1 4 4 C 1.36941 * 119.99834 * 275.73356 * 3 2 1 5 5 H 1.07995 * 120.00425 * 33.27027 * 4 3 2 6 6 C 1.38822 * 119.99726 * 213.27748 * 4 3 2 7 7 N 1.31618 * 120.00264 * 17.25977 * 6 4 3 8 8 Si 1.86803 * 119.99762 * 197.26370 * 6 4 3 9 9 H 1.48500 * 109.46929 * 59.99835 * 8 6 4 10 10 H 1.48495 * 109.46887 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47121 * 299.99945 * 8 6 4 12 12 C 1.46498 * 120.00598 * 95.73267 * 3 2 1 13 13 H 1.08991 * 109.47610 * 180.02562 * 12 3 2 14 14 C 1.53005 * 109.46811 * 60.07738 * 12 3 2 15 15 C 1.53000 * 109.46760 * 300.08155 * 12 3 2 16 16 N 1.46502 * 109.47330 * 304.99501 * 15 12 3 17 17 C 1.34771 * 120.00155 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99908 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99996 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.47084 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.46985 * 180.02562 * 20 19 17 22 22 C 1.52999 * 115.55070 * 34.32695 * 21 20 19 23 23 C 1.52996 * 117.50009 * 248.62123 * 21 20 19 24 24 C 1.52994 * 117.49949 * 179.97438 * 21 20 19 25 25 H 1.08996 * 109.47588 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47071 * 300.00952 * 1 2 3 27 27 H 1.08998 * 109.47000 * 59.99967 * 1 2 3 28 28 H 1.08994 * 109.47074 * 239.99616 * 2 1 3 29 29 H 1.08998 * 109.47000 * 120.00033 * 2 1 3 30 30 H 0.96995 * 119.99884 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46990 * 300.00261 * 14 12 3 32 32 H 1.08993 * 109.47489 * 60.00498 * 14 12 3 33 33 H 1.08997 * 109.47183 * 180.02562 * 14 12 3 34 34 H 1.08998 * 109.47031 * 184.99613 * 15 12 3 35 35 H 1.09000 * 109.47277 * 64.99772 * 15 12 3 36 36 H 0.96995 * 119.99335 * 0.02562 * 16 15 12 37 37 H 1.08998 * 109.46952 * 59.99860 * 19 17 16 38 38 H 1.09000 * 109.47341 * 300.00028 * 19 17 16 39 39 H 1.08998 * 109.47390 * 60.00067 * 20 19 17 40 40 H 1.09003 * 109.47279 * 299.99460 * 20 19 17 41 41 H 1.08999 * 109.47042 * 85.58480 * 22 21 20 42 42 H 1.09001 * 109.47576 * 205.58206 * 22 21 20 43 43 H 1.09005 * 109.47126 * 325.58631 * 22 21 20 44 44 H 1.09007 * 117.49582 * 0.02562 * 23 21 20 45 45 H 1.09000 * 117.50171 * 145.02038 * 23 21 20 46 46 H 1.09000 * 117.50111 * 214.97573 * 24 21 20 47 47 H 1.09008 * 117.49908 * 359.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8811 -1.9831 6 6 3.1503 2.9985 -1.3440 7 7 4.1872 2.9917 -0.5335 8 14 3.0448 4.2630 -2.7150 9 1 1.8245 5.0895 -2.5331 10 1 4.2446 5.1370 -2.6756 11 1 2.9809 3.5678 -4.0257 12 6 2.3820 2.0297 1.2623 13 1 2.7200 3.0467 1.0642 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0670 2.1861 16 7 0.0467 2.7177 1.4956 17 6 -1.1385 2.8643 2.1202 18 8 -1.2811 2.4573 3.2537 19 6 -2.2866 3.5341 1.4101 20 6 -3.5053 3.5725 2.3343 21 6 -4.6711 4.2520 1.6131 22 6 -4.7492 4.0037 0.1054 23 6 -5.1187 5.6214 2.1280 24 6 -5.9905 4.3882 2.3755 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.8965 3.6433 -0.6478 31 1 3.1705 0.2237 2.1329 32 1 4.3761 1.2145 1.2768 33 1 3.7780 1.7234 2.8743 34 1 1.4080 2.6271 3.0885 35 1 0.8800 1.0495 2.4557 36 1 0.1607 3.0428 0.5889 37 1 -2.5320 2.9742 0.5076 38 1 -2.0033 4.5516 1.1406 39 1 -3.2597 4.1327 3.2365 40 1 -3.7889 2.5552 2.6041 41 1 -5.2867 3.0742 -0.0824 42 1 -5.2751 4.8304 -0.3723 43 1 -3.7414 3.9295 -0.3033 44 1 -4.5823 6.0385 2.9804 45 1 -5.4688 6.3459 1.3926 46 1 -6.9140 4.3017 1.8030 47 1 -6.0282 3.9934 3.3909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156177347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = -11.154625 kcal Electronic energy + Delta-G solvation = -23481.734123 eV Core-core repulsion = 20279.416307 eV Total energy + Delta-G solvation = -3202.317816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.45775 -38.22585 -36.85329 -33.57636 -32.27850 -31.86803 -30.93058 -28.36003 -28.14866 -26.08270 -23.97572 -23.76563 -22.52133 -21.66793 -19.73896 -19.21221 -18.74559 -17.05162 -16.54152 -15.60804 -15.46603 -15.11617 -14.75260 -14.46024 -14.12901 -13.70182 -13.40060 -13.02915 -12.82055 -12.69526 -12.33746 -12.24390 -12.06078 -12.02507 -11.81268 -11.60001 -11.47106 -11.14274 -11.06194 -10.96948 -10.94478 -10.79990 -10.66159 -10.33084 -10.17940 -10.07026 -9.65044 -9.63217 -9.43569 -9.27894 -8.51757 -8.32290 -6.67197 -5.88980 -3.37624 3.16294 3.30795 3.37760 3.38869 3.62410 3.85540 4.40990 4.63640 4.66924 4.82970 4.94816 5.25766 5.27537 5.37203 5.39253 5.45340 5.52447 5.67592 5.70100 5.78241 5.80361 5.93879 6.02086 6.02994 6.06126 6.08200 6.21728 6.23228 6.27777 6.35468 6.39457 6.50391 6.55852 6.64437 6.69429 6.83988 6.91405 7.13986 7.16653 7.49063 7.58208 7.75977 8.23087 8.42671 8.82355 9.15548 9.77079 10.34470 11.17597 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.004660 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.928515 B = 6006.971887 C = 6789.720551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.177 3.823 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.702 5.702 17 C 0.503 3.497 18 O -0.564 6.564 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.177 4.177 24 C -0.178 4.178 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.411 0.589 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 2.141 2.923 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.289 3.711 18 O -0.445 6.445 19 C -0.180 4.180 20 C -0.100 4.100 21 C -0.126 4.126 22 C -0.181 4.181 23 C -0.214 4.214 24 C -0.215 4.215 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.226 1.949 3.702 13.872 hybrid contribution 0.088 0.841 -1.164 1.439 sum -13.138 2.790 2.537 13.668 Atomic orbital electron populations 1.22454 1.00062 0.98971 1.01536 1.20745 0.91683 0.87456 0.98672 1.43872 1.75991 1.08255 1.02269 1.19040 1.08591 1.18313 0.93392 0.91930 1.25151 0.94508 1.01337 0.97798 1.69995 1.07826 1.35938 1.39558 0.86471 0.76992 0.81618 0.82228 1.20966 1.21707 1.20884 1.20488 0.88950 0.99454 0.84184 0.88305 1.22026 1.01168 0.97965 0.99218 1.22131 0.88316 0.96216 0.95723 1.46014 1.11076 1.59097 1.19075 1.20643 0.84134 0.79622 0.86670 1.90637 1.83522 1.51309 1.18982 1.21735 0.93991 1.02173 1.00146 1.20815 0.91038 1.01102 0.97045 1.21562 0.95878 0.99629 0.95496 1.21501 1.02815 1.01447 0.92312 1.23170 1.03967 0.90959 1.03325 1.23016 0.94408 1.02569 1.01470 0.94915 0.92895 0.93473 0.94168 0.94565 0.93501 0.95191 0.90328 0.94883 0.93167 0.92989 0.75292 0.88696 0.89158 0.91226 0.91005 0.92245 0.92692 0.91044 0.88887 0.89052 0.89042 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.87 37.16 0.37 -2.69 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -12.99 1.85 -165.67 -0.31 -13.30 16 4 C -0.26 -6.47 9.26 -15.05 -0.14 -6.61 16 5 H 0.06 1.54 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.49 10.60 55.49 0.59 -22.90 16 8 Si 0.90 20.09 29.59 -169.99 -5.03 15.06 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.18 3.78 1.93 -67.93 -0.13 3.65 16 13 H 0.10 2.40 6.03 -51.93 -0.31 2.09 16 14 C -0.14 -2.97 9.05 37.16 0.34 -2.63 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.96 16 16 N -0.70 -12.65 3.99 -60.29 -0.24 -12.89 16 17 C 0.50 8.68 7.59 -10.99 -0.08 8.60 16 18 O -0.56 -11.50 15.98 5.56 0.09 -11.41 16 19 C -0.14 -1.86 4.71 -27.88 -0.13 -1.99 16 20 C -0.06 -0.78 4.69 -26.73 -0.13 -0.91 16 21 C -0.13 -1.32 2.47 -154.51 -0.38 -1.70 16 22 C -0.12 -1.19 9.49 37.16 0.35 -0.84 16 23 C -0.18 -1.71 9.82 -26.71 -0.26 -1.97 16 24 C -0.18 -1.69 9.97 -26.71 -0.27 -1.95 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 30 H 0.25 6.64 8.31 -40.82 -0.34 6.31 16 31 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 32 H 0.08 1.83 7.40 -51.93 -0.38 1.45 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.04 7.05 -51.93 -0.37 0.67 16 36 H 0.41 7.53 7.89 -40.82 -0.32 7.21 16 37 H 0.09 1.15 6.45 -51.93 -0.33 0.82 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 43 H 0.07 0.70 5.59 -51.93 -0.29 0.41 16 44 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -27.04 364.93 -8.37 -35.41 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.38 Total: 8.59 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.59 Total: -4.06 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.04 Total: -49.09 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.04 -8.37 -35.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156177347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.251 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds