Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47096 * 2 1 4 4 C 1.36938 * 120.00192 * 275.73186 * 3 2 1 5 5 H 1.08000 * 119.99975 * 33.26751 * 4 3 2 6 6 C 1.38812 * 120.00153 * 213.27663 * 4 3 2 7 7 N 1.31618 * 120.00176 * 17.26188 * 6 4 3 8 8 Si 1.86801 * 119.99794 * 197.26708 * 6 4 3 9 9 H 1.48504 * 109.47027 * 89.99394 * 8 6 4 10 10 H 1.48496 * 109.47005 * 209.99296 * 8 6 4 11 11 H 1.48493 * 109.46993 * 329.99628 * 8 6 4 12 12 C 1.46499 * 119.99959 * 95.73258 * 3 2 1 13 13 H 1.09003 * 109.47444 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.46982 * 60.08410 * 12 3 2 15 15 C 1.52998 * 109.47047 * 300.08121 * 12 3 2 16 16 N 1.46499 * 109.47281 * 305.00067 * 15 12 3 17 17 C 1.34773 * 119.99873 * 180.02562 * 16 15 12 18 18 O 1.21273 * 120.00436 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99588 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.46997 * 179.97438 * 19 17 16 21 21 H 1.09006 * 109.47009 * 54.99669 * 20 19 17 22 22 C 1.53000 * 109.47172 * 295.00317 * 20 19 17 23 23 C 1.52995 * 109.47377 * 174.99878 * 20 19 17 24 24 C 1.52998 * 117.50264 * 179.97438 * 23 20 19 25 25 C 1.53000 * 60.03059 * 107.47903 * 24 23 20 26 26 H 1.08994 * 109.47221 * 299.99855 * 1 2 3 27 27 H 1.08996 * 109.46863 * 60.00156 * 1 2 3 28 28 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47084 * 239.99946 * 2 1 3 30 30 H 1.09002 * 109.47302 * 120.00401 * 2 1 3 31 31 H 0.96998 * 119.99806 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47093 * 299.99546 * 14 12 3 33 33 H 1.08994 * 109.47554 * 59.99826 * 14 12 3 34 34 H 1.09002 * 109.46826 * 180.02562 * 14 12 3 35 35 H 1.09001 * 109.46619 * 184.99894 * 15 12 3 36 36 H 1.09001 * 109.47217 * 65.00546 * 15 12 3 37 37 H 0.96998 * 119.99639 * 359.97438 * 16 15 12 38 38 H 1.08997 * 109.47067 * 59.99976 * 19 17 16 39 39 H 1.08992 * 109.47046 * 299.99762 * 19 17 16 40 40 H 1.09004 * 109.47118 * 299.99452 * 22 20 19 41 41 H 1.08998 * 109.47485 * 59.99824 * 22 20 19 42 42 H 1.09001 * 109.47326 * 179.97438 * 22 20 19 43 43 H 1.08999 * 115.55810 * 34.31142 * 23 20 19 44 44 H 1.08998 * 117.50374 * 214.97994 * 24 23 20 45 45 H 1.09002 * 117.49413 * 359.97438 * 24 23 20 46 46 H 1.09004 * 117.49647 * 107.50551 * 25 24 23 47 47 H 1.08998 * 117.50547 * 252.51770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4370 1.8811 -1.9831 6 6 3.1502 2.9986 -1.3439 7 7 4.1872 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7148 9 1 2.3488 5.4766 -2.2163 10 1 4.4140 4.6254 -3.1605 11 1 2.2870 3.6923 -3.8573 12 6 2.3820 2.0295 1.2624 13 1 2.7200 3.0467 1.0643 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0669 2.1862 16 7 0.0466 2.7175 1.4957 17 6 -1.1386 2.8641 2.1203 18 8 -1.2812 2.4571 3.2538 19 6 -2.2867 3.5339 1.4102 20 6 -3.5058 3.5711 2.3339 21 1 -3.2351 4.0530 3.2735 22 6 -3.9792 2.1429 2.6114 23 6 -4.6312 4.3599 1.6617 24 6 -5.9451 4.5113 2.4310 25 6 -5.0095 5.7115 2.2727 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.8964 3.6434 -0.6478 32 1 3.1706 0.2237 2.1329 33 1 4.3761 1.2146 1.2767 34 1 3.7779 1.7233 2.8743 35 1 1.4081 2.6269 3.0886 36 1 0.8801 1.0493 2.4558 37 1 0.1608 3.0433 0.5893 38 1 -2.5321 2.9740 0.5078 39 1 -2.0034 4.5513 1.1408 40 1 -4.2499 1.6608 1.6719 41 1 -3.1775 1.5808 3.0903 42 1 -4.8474 2.1693 3.2699 43 1 -4.6913 4.2626 0.5778 44 1 -6.8693 4.5139 1.8532 45 1 -6.0077 4.0484 3.4159 46 1 -5.3182 6.5037 1.5906 47 1 -4.4564 6.0382 3.1533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157146240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = -12.656216 kcal Electronic energy + Delta-G solvation = -23619.319188 eV Core-core repulsion = 20416.936259 eV Total energy + Delta-G solvation = -3202.382930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.55202 -37.89597 -36.82393 -33.63466 -32.99510 -31.88244 -31.06271 -28.28629 -27.80698 -25.21495 -23.94297 -23.34756 -22.35537 -21.67265 -19.94162 -19.55680 -19.15865 -17.02336 -16.43578 -15.94652 -15.29853 -15.05825 -14.77065 -14.39608 -14.27585 -13.56059 -13.44880 -12.95796 -12.92373 -12.68438 -12.32954 -12.24507 -11.88136 -11.80032 -11.66853 -11.50715 -11.19113 -11.07451 -11.03421 -10.95466 -10.82787 -10.72075 -10.62466 -10.33852 -10.29935 -10.07668 -9.93352 -9.63156 -9.43373 -9.19833 -8.52198 -8.30896 -6.67573 -5.89075 -3.37870 3.16549 3.29829 3.38865 3.39382 3.68594 3.86099 4.40876 4.64061 4.79855 4.85965 5.02206 5.25733 5.29755 5.37434 5.42237 5.51366 5.52256 5.66997 5.78117 5.82121 5.91271 5.95854 5.99054 6.02398 6.06337 6.18964 6.24448 6.27586 6.39286 6.45255 6.49556 6.53641 6.56921 6.65072 6.69699 6.83903 6.91360 7.15228 7.16620 7.49000 7.58229 7.76315 8.23560 8.42551 8.83158 9.15474 9.76916 10.34206 11.17423 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.004705 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.612557 B = 5949.243736 C = 6720.968975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.703 5.703 17 C 0.505 3.495 18 O -0.560 6.560 19 C -0.136 4.136 20 C -0.041 4.041 21 H 0.076 0.924 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.180 4.180 25 C -0.183 4.183 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.410 0.590 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 1.661 3.903 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.023 4.023 16 N -0.353 5.353 17 C 0.291 3.709 18 O -0.440 6.440 19 C -0.176 4.176 20 C -0.060 4.060 21 H 0.094 0.906 22 C -0.206 4.206 23 C -0.165 4.165 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.247 0.753 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.992 1.460 4.677 13.885 hybrid contribution 0.099 0.870 -1.255 1.531 sum -12.893 2.330 3.422 13.541 Atomic orbital electron populations 1.22452 1.00040 0.98959 1.01548 1.20746 0.91692 0.87448 0.98662 1.43881 1.75972 1.08265 1.02280 1.19094 1.08551 1.18202 0.93387 0.91863 1.25150 0.94511 1.01348 0.97816 1.70007 1.07861 1.35851 1.39600 0.86392 0.76942 0.81928 0.82086 1.21387 1.21798 1.20420 1.20490 0.88969 0.99451 0.84190 0.88316 1.22025 1.01173 0.97958 0.99214 1.22122 0.88304 0.96203 0.95704 1.46022 1.11090 1.59088 1.19081 1.20562 0.84022 0.79579 0.86690 1.90601 1.83244 1.51202 1.18931 1.21694 0.93950 1.02094 0.99844 1.20417 0.91511 0.96368 0.97727 0.90601 1.21908 1.01598 0.95948 1.01101 1.22401 0.96287 0.98858 0.98943 1.22905 0.94002 1.02645 1.02097 1.23030 1.04054 0.91593 1.03287 0.92853 0.93498 0.94932 0.94185 0.94567 0.93563 0.95196 0.90336 0.94889 0.93174 0.92986 0.75331 0.89122 0.89205 0.93418 0.90458 0.93305 0.87851 0.89123 0.88844 0.89083 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.87 37.16 0.37 -2.68 16 2 C 0.14 2.83 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -12.98 1.85 -165.66 -0.31 -13.28 16 4 C -0.26 -6.45 9.26 -15.06 -0.14 -6.59 16 5 H 0.06 1.57 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.22 16 7 N -0.89 -23.50 10.60 55.49 0.59 -22.91 16 8 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.18 3.76 1.92 -67.93 -0.13 3.63 16 13 H 0.10 2.40 6.03 -51.93 -0.31 2.09 16 14 C -0.14 -2.96 9.05 37.16 0.34 -2.63 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.95 16 16 N -0.70 -12.53 3.99 -60.29 -0.24 -12.77 16 17 C 0.51 8.54 7.31 -10.98 -0.08 8.46 16 18 O -0.56 -10.95 13.97 5.56 0.08 -10.87 16 19 C -0.14 -1.79 5.16 -27.88 -0.14 -1.94 16 20 C -0.04 -0.51 2.19 -90.62 -0.20 -0.71 16 21 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 22 C -0.15 -1.90 8.77 37.16 0.33 -1.58 16 23 C -0.15 -1.53 5.15 -90.59 -0.47 -1.99 16 24 C -0.18 -1.68 9.73 -26.73 -0.26 -1.94 16 25 C -0.18 -1.74 10.18 -26.70 -0.27 -2.02 16 26 H 0.05 0.98 4.99 -51.93 -0.26 0.72 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 31 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 33 H 0.08 1.83 7.39 -51.93 -0.38 1.44 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.03 7.05 -51.93 -0.37 0.66 16 37 H 0.41 7.50 7.90 -40.82 -0.32 7.18 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.19 5.95 -51.93 -0.31 0.89 16 42 H 0.05 0.56 7.29 -51.93 -0.38 0.18 16 43 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.88 7.60 -51.93 -0.39 0.48 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -26.56 363.54 -8.64 -35.20 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.42 Total: 9.06 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.79 Total: -5.00 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.04 Total: -48.97 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.56 -8.64 -35.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157146240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.546 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds