Wall clock time and date at job start Tue Mar 31 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47346 * 2 1 4 4 C 1.36936 * 119.99913 * 275.73349 * 3 2 1 5 5 H 1.08002 * 119.99747 * 33.27343 * 4 3 2 6 6 C 1.38815 * 119.99841 * 213.26954 * 4 3 2 7 7 N 1.31618 * 119.99917 * 17.27506 * 6 4 3 8 8 Si 1.86805 * 119.99726 * 197.26770 * 6 4 3 9 9 H 1.48500 * 109.46994 * 90.00406 * 8 6 4 10 10 H 1.48500 * 109.46815 * 210.00204 * 8 6 4 11 11 H 1.48493 * 109.47263 * 330.00157 * 8 6 4 12 12 C 1.46493 * 119.99971 * 95.73503 * 3 2 1 13 13 H 1.08997 * 109.47411 * 180.02562 * 12 3 2 14 14 C 1.52999 * 109.47206 * 60.08282 * 12 3 2 15 15 C 1.53004 * 109.47404 * 300.08241 * 12 3 2 16 16 N 1.46499 * 109.46703 * 305.00331 * 15 12 3 17 17 C 1.34777 * 119.99665 * 180.02562 * 16 15 12 18 18 O 1.21278 * 120.00433 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99862 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47100 * 179.97438 * 19 17 16 21 21 H 1.09001 * 109.47655 * 304.99995 * 20 19 17 22 22 C 1.53002 * 109.47067 * 65.00182 * 20 19 17 23 23 C 1.53003 * 109.47185 * 184.99761 * 20 19 17 24 24 C 1.53005 * 117.49743 * 128.62079 * 23 20 19 25 25 C 1.52995 * 117.49775 * 60.00063 * 23 20 19 26 26 H 1.09008 * 109.46715 * 300.00090 * 1 2 3 27 27 H 1.08996 * 109.47398 * 59.99643 * 1 2 3 28 28 H 1.08995 * 109.47351 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46804 * 239.99722 * 2 1 3 30 30 H 1.09001 * 109.47170 * 120.00783 * 2 1 3 31 31 H 0.96998 * 119.99565 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47535 * 59.99771 * 14 12 3 33 33 H 1.09008 * 109.47180 * 180.02562 * 14 12 3 34 34 H 1.09007 * 109.47250 * 299.99704 * 14 12 3 35 35 H 1.08996 * 109.47604 * 184.99893 * 15 12 3 36 36 H 1.09002 * 109.46928 * 64.99784 * 15 12 3 37 37 H 0.97002 * 120.00104 * 359.97438 * 16 15 12 38 38 H 1.08996 * 109.47169 * 59.99541 * 19 17 16 39 39 H 1.09002 * 109.47064 * 299.99615 * 19 17 16 40 40 H 1.09000 * 109.47410 * 60.00112 * 22 20 19 41 41 H 1.09006 * 109.47221 * 299.99493 * 22 20 19 42 42 H 1.09007 * 109.47057 * 180.02562 * 22 20 19 43 43 H 1.09002 * 115.55241 * 274.32900 * 23 20 19 44 44 H 1.08998 * 117.49649 * 0.02562 * 24 23 20 45 45 H 1.08999 * 117.49762 * 145.02223 * 24 23 20 46 46 H 1.08997 * 117.50389 * 214.97833 * 25 23 20 47 47 H 1.09009 * 117.49957 * 359.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0662 -1.1800 5 1 1.4369 1.8810 -1.9830 6 6 3.1502 2.9986 -1.3439 7 7 4.1873 2.9916 -0.5334 8 14 3.0446 4.2631 -2.7148 9 1 2.3490 5.4767 -2.2163 10 1 4.4140 4.6253 -3.1605 11 1 2.2870 3.6924 -3.8573 12 6 2.3821 2.0295 1.2623 13 1 2.7202 3.0466 1.0643 14 6 3.5078 1.2411 1.9348 15 6 1.1632 2.0669 2.1863 16 7 0.0469 2.7175 1.4958 17 6 -1.1383 2.8642 2.1205 18 8 -1.2809 2.4572 3.2540 19 6 -2.2865 3.5340 1.4104 20 6 -3.5055 3.5713 2.3343 21 1 -3.7346 2.5614 2.6745 22 6 -3.2028 4.4601 3.5423 23 6 -4.7056 4.1374 1.5726 24 6 -6.0056 3.3310 1.6025 25 6 -5.1681 3.3851 0.3232 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 4.8965 3.6433 -0.6478 32 1 4.3762 1.2144 1.2766 33 1 3.7781 1.7232 2.8743 34 1 3.1707 0.2236 2.1329 35 1 1.4082 2.6268 3.0887 36 1 0.8802 1.0493 2.4557 37 1 0.1610 3.0433 0.5893 38 1 -2.5319 2.9741 0.5080 39 1 -2.0032 4.5515 1.1409 40 1 -2.9738 5.4700 3.2021 41 1 -2.3479 4.0568 4.0851 42 1 -4.0712 4.4863 4.2008 43 1 -4.7873 5.2243 1.5646 44 1 -6.0059 2.3975 2.1651 45 1 -6.9428 3.8875 1.6143 46 1 -5.5544 3.9770 -0.5066 47 1 -4.6171 2.4870 0.0436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157146241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:14 Heat of formation + Delta-G solvation = -12.676639 kcal Electronic energy + Delta-G solvation = -23697.329742 eV Core-core repulsion = 20494.945926 eV Total energy + Delta-G solvation = -3202.383815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.57016 -37.87344 -36.81189 -33.64024 -32.97384 -31.88251 -31.07814 -28.31076 -27.87698 -25.11298 -23.94162 -23.24906 -22.40101 -21.68029 -20.12431 -19.47734 -19.09358 -17.00848 -16.47930 -15.91491 -15.28709 -14.99880 -14.81889 -14.41084 -14.30234 -13.66983 -13.37130 -12.90299 -12.86824 -12.68164 -12.36042 -12.23756 -11.86982 -11.73557 -11.64624 -11.50976 -11.23761 -11.10613 -11.05430 -10.95473 -10.82741 -10.74672 -10.65416 -10.30118 -10.23483 -10.07904 -9.98391 -9.63245 -9.43274 -9.18533 -8.52073 -8.30858 -6.67574 -5.89047 -3.37809 3.16758 3.29880 3.38932 3.39398 3.64308 3.92822 4.40933 4.62071 4.82497 4.87602 5.07371 5.25400 5.26107 5.33889 5.40457 5.52868 5.59002 5.65353 5.78178 5.81704 5.90344 5.93707 6.03607 6.05921 6.10335 6.16455 6.22150 6.27416 6.38955 6.43514 6.49261 6.53796 6.56195 6.64955 6.69369 6.83730 6.91091 7.15351 7.16305 7.49026 7.58229 7.76343 8.23767 8.42569 8.83395 9.15499 9.76920 10.34225 11.17451 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.004885 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.934567 B = 5730.755694 C = 6316.855840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.176 3.824 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.703 5.703 17 C 0.505 3.495 18 O -0.560 6.560 19 C -0.136 4.136 20 C -0.042 4.042 21 H 0.076 0.924 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.181 4.181 25 C -0.182 4.182 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.410 0.590 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 1.456 3.495 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.023 4.023 16 N -0.353 5.353 17 C 0.291 3.709 18 O -0.440 6.440 19 C -0.176 4.176 20 C -0.060 4.060 21 H 0.094 0.906 22 C -0.206 4.206 23 C -0.165 4.165 24 C -0.218 4.218 25 C -0.219 4.219 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.247 0.753 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.847 1.258 4.269 13.596 hybrid contribution 0.084 0.836 -1.266 1.519 sum -12.763 2.094 3.004 13.278 Atomic orbital electron populations 1.22453 1.00070 0.98948 1.01533 1.20746 0.91676 0.87465 0.98669 1.43877 1.75961 1.08255 1.02281 1.19093 1.08542 1.18192 0.93385 0.91868 1.25151 0.94513 1.01347 0.97817 1.70008 1.07857 1.35847 1.39605 0.86393 0.76937 0.81932 0.82091 1.21388 1.21801 1.20420 1.20490 0.88969 0.99455 0.84191 0.88306 1.22027 1.01173 0.97954 0.99214 1.22122 0.88307 0.96196 0.95706 1.46027 1.11090 1.59084 1.19083 1.20593 0.84066 0.79566 0.86686 1.90602 1.83423 1.51148 1.18835 1.21712 0.93945 1.02204 0.99763 1.20421 0.91281 1.00109 0.94226 0.90552 1.21910 1.02505 0.98619 0.97543 1.22420 0.95238 0.98206 1.00647 1.22989 0.94867 1.02275 1.01633 1.22957 1.04133 1.03104 0.91701 0.92889 0.93486 0.94938 0.94176 0.94562 0.93566 0.90337 0.94887 0.95205 0.93165 0.93008 0.75332 0.89159 0.89237 0.93477 0.90358 0.93226 0.87943 0.88872 0.89164 0.88973 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.87 37.16 0.37 -2.69 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -12.97 1.85 -165.66 -0.31 -13.28 16 4 C -0.26 -6.45 9.26 -15.06 -0.14 -6.59 16 5 H 0.06 1.57 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.22 16 7 N -0.89 -23.50 10.60 55.49 0.59 -22.91 16 8 Si 0.90 20.15 29.59 -169.99 -5.03 15.12 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.18 3.76 1.92 -67.93 -0.13 3.63 16 13 H 0.10 2.40 6.03 -51.93 -0.31 2.09 16 14 C -0.14 -2.96 9.05 37.16 0.34 -2.63 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.95 16 16 N -0.70 -12.55 3.99 -60.29 -0.24 -12.79 16 17 C 0.50 8.55 7.31 -10.98 -0.08 8.47 16 18 O -0.56 -10.96 13.96 5.56 0.08 -10.88 16 19 C -0.14 -1.81 5.09 -27.88 -0.14 -1.95 16 20 C -0.04 -0.52 2.19 -90.62 -0.20 -0.72 16 21 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 22 C -0.15 -1.88 8.92 37.16 0.33 -1.55 16 23 C -0.15 -1.53 5.15 -90.62 -0.47 -2.00 16 24 C -0.18 -1.72 10.18 -26.73 -0.27 -1.99 16 25 C -0.18 -1.78 9.67 -26.73 -0.26 -2.04 16 26 H 0.05 0.98 4.99 -51.92 -0.26 0.72 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 31 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.08 1.83 7.39 -51.93 -0.38 1.44 16 33 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.03 7.05 -51.93 -0.37 0.66 16 37 H 0.41 7.52 7.90 -40.82 -0.32 7.20 16 38 H 0.09 1.13 7.12 -51.93 -0.37 0.76 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.19 5.95 -51.93 -0.31 0.88 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 0.98 7.58 -51.92 -0.39 0.58 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -26.52 363.35 -8.63 -35.14 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.41 Total: 9.20 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.78 Total: -5.08 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.04 Total: -48.98 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.52 -8.63 -35.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157146241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.468 kcal (2) G-P(sol) polarization free energy of solvation -26.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds