Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 C 1.53001 * 109.46801 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.46909 * 179.12756 * 4 3 2 6 6 C 1.46897 * 111.00333 * 291.22993 * 5 4 3 7 7 C 1.50703 * 109.47174 * 296.84480 * 6 5 4 8 8 H 1.08000 * 119.99971 * 4.23963 * 7 6 5 9 9 C 1.37877 * 119.99828 * 184.23332 * 7 6 5 10 10 N 1.31506 * 120.00267 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99437 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47339 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47108 * 120.00298 * 11 9 7 14 14 H 1.48509 * 109.46751 * 239.99842 * 11 9 7 15 15 C 1.46902 * 110.99953 * 167.27759 * 5 4 3 16 16 C 1.53007 * 109.47163 * 180.02562 * 15 5 4 17 17 C 1.52995 * 109.47020 * 179.97438 * 16 15 5 18 18 C 1.52999 * 109.47623 * 300.00256 * 17 16 15 19 19 N 1.46909 * 109.46857 * 300.00127 * 18 17 16 20 20 C 1.46895 * 110.99887 * 179.97438 * 19 18 17 21 21 C 1.46901 * 110.99675 * 303.95219 * 19 18 17 22 22 C 1.53000 * 109.47287 * 59.99569 * 18 17 16 23 23 C 1.53003 * 109.47303 * 300.00572 * 22 18 17 24 24 H 1.09003 * 109.47323 * 59.99207 * 1 2 3 25 25 H 1.09000 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46891 * 300.00012 * 1 2 3 27 27 H 1.09006 * 109.46590 * 240.00415 * 2 1 3 28 28 H 1.08993 * 109.47261 * 120.00804 * 2 1 3 29 29 H 1.08997 * 109.46855 * 60.00778 * 3 2 1 30 30 H 1.08993 * 109.47344 * 300.00134 * 3 2 1 31 31 H 1.08996 * 109.47308 * 59.12575 * 4 3 2 32 32 H 1.09000 * 109.47275 * 299.13092 * 4 3 2 33 33 H 1.09000 * 109.46916 * 56.84314 * 6 5 4 34 34 H 1.08997 * 109.47572 * 176.84514 * 6 5 4 35 35 H 0.96999 * 120.00297 * 179.97438 * 10 9 7 36 36 H 1.09005 * 109.47201 * 60.00157 * 15 5 4 37 37 H 1.08996 * 109.46756 * 59.99947 * 16 15 5 38 38 H 1.08997 * 109.47022 * 299.99893 * 16 15 5 39 39 H 1.09005 * 109.47120 * 60.00261 * 17 16 15 40 40 H 1.08995 * 109.47101 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.47864 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47314 * 59.99923 * 20 19 18 43 43 H 1.09000 * 109.47245 * 179.97438 * 20 19 18 44 44 H 1.08997 * 109.47628 * 300.00038 * 20 19 18 45 45 H 1.08998 * 109.47100 * 59.99801 * 21 19 18 46 46 H 1.08997 * 109.46829 * 179.97438 * 21 19 18 47 47 H 1.09005 * 109.47015 * 299.99706 * 21 19 18 48 48 H 1.09005 * 109.46685 * 60.00468 * 22 18 17 49 49 H 1.08997 * 109.47177 * 180.02562 * 22 18 17 50 50 H 1.09002 * 109.47094 * 179.97438 * 23 22 18 51 51 H 1.08992 * 109.46910 * 299.99747 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8272 -0.0217 6 6 3.7664 3.4698 -1.3097 7 6 4.5018 2.7486 -2.4099 8 1 5.0695 1.8576 -2.1860 9 6 4.4497 3.2264 -3.7022 10 7 3.7579 4.3110 -3.9749 11 14 5.3607 2.3319 -5.0659 12 1 6.0578 1.1482 -4.5020 13 1 4.3921 1.8900 -6.1011 14 1 6.3569 3.2471 -5.6787 15 6 5.4965 2.8822 0.2789 16 6 5.9687 4.3372 0.2484 17 6 7.4651 4.3944 0.5621 18 6 7.7179 3.8052 1.9513 19 7 6.9772 4.5815 2.9547 20 6 7.1961 4.0430 4.3037 21 6 7.3373 6.0043 2.8904 22 6 7.2457 2.3502 1.9818 23 6 5.7493 2.2930 1.6681 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9330 0.9152 -0.8829 32 1 3.9337 0.9420 0.8968 33 1 2.6942 3.4276 -1.5011 34 1 4.0892 4.5104 -1.2785 35 1 3.7216 4.6473 -4.8840 36 1 6.0458 2.3059 -0.4656 37 1 5.4194 4.9131 0.9932 38 1 5.7883 4.7571 -0.7411 39 1 8.0147 3.8184 -0.1824 40 1 7.8016 5.4309 0.5400 41 1 8.7839 3.8464 2.1750 42 1 8.2585 4.0851 4.5438 43 1 6.6368 4.6364 5.0270 44 1 6.8559 3.0082 4.3415 45 1 7.0996 6.3949 1.9010 46 1 6.7743 6.5559 3.6433 47 1 8.4049 6.1177 3.0791 48 1 7.7954 1.7742 1.2373 49 1 7.4254 1.9306 2.9716 50 1 5.4130 1.2563 1.6895 51 1 5.1998 2.8690 2.4126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168322487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -10.732867 kcal Electronic energy + Delta-G solvation = -24375.733380 eV Core-core repulsion = 21309.266947 eV Total energy + Delta-G solvation = -3066.466433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.43197 -37.15928 -34.71013 -33.43465 -32.14135 -30.79863 -28.98928 -27.96715 -27.04623 -25.74590 -23.64696 -23.41805 -21.77188 -21.47013 -20.28915 -19.20870 -18.50870 -16.25526 -15.82993 -15.24752 -15.10673 -14.88509 -14.59833 -14.55365 -13.69647 -13.47861 -13.33296 -12.92391 -12.86551 -12.50718 -12.31260 -12.05082 -12.04291 -11.96886 -11.80893 -11.50156 -11.27106 -11.04829 -10.97907 -10.87508 -10.70134 -10.59481 -10.45845 -10.30883 -10.23685 -10.15363 -9.80423 -9.67881 -9.56205 -9.45009 -8.98105 -8.33113 -8.11084 -6.96505 -5.94628 -4.02644 3.28652 3.37168 3.40337 4.07958 4.45625 4.96221 4.99367 5.15833 5.27280 5.34819 5.39506 5.40768 5.44103 5.56483 5.60843 5.61897 5.64052 5.77730 5.87101 5.91823 5.95346 5.97666 6.04241 6.07912 6.11295 6.17311 6.20619 6.24204 6.32441 6.33982 6.44222 6.55178 6.58177 6.63947 6.67200 6.84813 6.88969 7.05264 7.06365 7.10684 7.23393 7.28319 7.31879 7.47149 7.66678 8.01207 8.25480 8.42828 8.52805 9.09205 9.63065 11.09398 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.006154 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.939853 B = 4549.076655 C = 6188.928989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.058 3.942 5 N -0.537 5.537 6 C 0.183 3.817 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.882 3.118 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.103 3.897 16 C -0.099 4.099 17 C -0.112 4.112 18 C 0.088 3.912 19 N -0.530 5.530 20 C 0.024 3.976 21 C 0.022 3.978 22 C -0.110 4.110 23 C -0.106 4.106 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -2.450 13.414 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.070 4.070 5 N -0.260 5.260 6 C 0.058 3.942 7 C -0.577 4.577 8 H 0.073 0.927 9 C -0.137 4.137 10 N -0.531 5.531 11 Si 0.710 3.290 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.006 4.006 16 C -0.137 4.137 17 C -0.151 4.151 18 C -0.020 4.020 19 N -0.254 5.254 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.673 -2.103 13.525 14.172 hybrid contribution 1.888 -0.845 -1.438 2.519 sum 5.561 -2.948 12.088 13.628 Atomic orbital electron populations 1.21751 0.96520 1.00654 1.01705 1.21483 0.95230 0.98039 1.01215 1.21526 0.95991 0.95043 1.02271 1.21970 0.94469 0.91267 0.99342 1.62502 1.13600 1.15267 1.34669 1.19812 0.96428 0.95008 0.82997 1.21769 1.31041 1.11303 0.93618 0.92744 1.24918 0.95372 0.94889 0.98534 1.69948 1.41111 1.22123 1.19909 0.86701 0.79807 0.79894 0.82585 1.19982 1.21074 1.21082 1.21238 0.89594 0.95784 0.93936 1.21412 0.93027 0.97012 1.02234 1.21647 0.98939 0.99942 0.94532 1.21658 0.93759 0.93979 0.92628 1.61939 1.57247 1.02291 1.03940 1.22402 0.98502 1.01234 0.90336 1.22426 0.97790 0.89259 1.03102 1.21599 0.98024 0.94642 1.00570 1.21560 0.94237 0.99842 0.98702 0.92746 0.93548 0.93080 0.92356 0.92879 0.92508 0.91333 0.94369 0.93009 0.95463 0.94485 0.93058 0.94563 0.91182 0.90991 0.91929 0.92441 0.95243 0.96452 0.91813 0.91084 0.90602 0.91818 0.96415 0.92078 0.92626 0.93243 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.11 -1.99 5.22 -26.73 -0.14 -2.13 16 4 C 0.06 1.14 4.64 -3.83 -0.02 1.12 16 5 N -0.54 -11.45 4.56 -228.08 -1.04 -12.49 16 6 C 0.18 4.65 4.50 -4.98 -0.02 4.62 16 7 C -0.54 -14.59 7.52 -34.44 -0.26 -14.85 16 8 H 0.05 1.49 5.88 -52.49 -0.31 1.19 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 11 Si 0.88 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.10 2.00 1.58 -67.71 -0.11 1.89 16 16 C -0.10 -1.86 4.68 -26.73 -0.13 -1.98 16 17 C -0.11 -1.74 4.95 -26.73 -0.13 -1.87 16 18 C 0.09 1.20 2.27 -67.71 -0.15 1.05 16 19 N -0.53 -6.95 3.35 -243.18 -0.82 -7.76 16 20 C 0.02 0.26 9.21 60.06 0.55 0.81 16 21 C 0.02 0.26 9.11 60.07 0.55 0.81 16 22 C -0.11 -1.52 5.08 -26.73 -0.14 -1.65 16 23 C -0.11 -1.70 4.85 -26.73 -0.13 -1.83 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.41 6.54 -51.93 -0.34 1.07 16 31 H 0.04 0.84 6.37 -51.93 -0.33 0.51 16 32 H 0.05 0.92 5.72 -51.93 -0.30 0.62 16 33 H 0.03 0.75 6.43 -51.93 -0.33 0.41 16 34 H 0.04 1.01 6.19 -51.93 -0.32 0.69 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.04 0.80 6.73 -51.93 -0.35 0.45 16 37 H 0.07 1.33 7.60 -51.93 -0.39 0.94 16 38 H 0.07 1.59 6.33 -51.93 -0.33 1.26 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.83 6.35 -51.93 -0.33 0.50 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.07 0.77 6.30 -51.93 -0.33 0.45 16 45 H 0.08 0.95 6.23 -51.93 -0.32 0.63 16 46 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.68 6.40 -51.93 -0.33 0.34 16 50 H 0.05 0.79 6.15 -51.93 -0.32 0.47 16 51 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -28.20 367.90 -10.26 -38.47 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -9.66 Total: 1.03 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.01 Total: -15.91 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.12 Total: -45.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.20 -10.26 -38.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168322487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.733 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds