Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.44794 * 112.18107 * 2 1 4 4 C 1.54508 * 108.18668 * 294.64135 * 3 2 1 5 5 C 1.53334 * 111.17116 * 52.09119 * 3 2 1 6 6 C 1.52658 * 113.00750 * 175.71656 * 3 2 1 7 7 C 1.52843 * 110.40313 * 310.81313 * 6 3 2 8 8 N 1.47231 * 109.23733 * 179.06010 * 7 6 3 9 9 C 1.46905 * 110.99931 * 86.42713 * 8 7 6 10 10 C 1.52994 * 109.46692 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46851 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47232 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99485 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99829 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99826 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47336 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47209 * 120.00064 * 16 14 12 19 19 H 1.48505 * 109.47123 * 240.00348 * 16 14 12 20 20 C 1.52847 * 108.53306 * 60.05399 * 7 6 3 21 21 C 1.44801 * 112.17944 * 138.95336 * 2 1 3 22 22 C 1.53331 * 111.18615 * 307.76879 * 21 2 1 23 23 C 1.54489 * 108.19965 * 65.25115 * 21 2 1 24 24 H 1.09004 * 109.47108 * 60.00401 * 1 2 3 25 25 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47300 * 300.00398 * 1 2 3 27 27 H 1.09002 * 109.47267 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46902 * 59.97314 * 4 3 2 29 29 H 1.09004 * 109.47076 * 299.97365 * 4 3 2 30 30 H 1.09005 * 109.47473 * 301.95351 * 5 3 2 31 31 H 1.09000 * 109.47478 * 61.95010 * 5 3 2 32 32 H 1.09003 * 109.47645 * 181.95300 * 5 3 2 33 33 H 1.09239 * 109.44552 * 71.26309 * 6 3 2 34 34 H 1.09248 * 109.43500 * 190.38985 * 6 3 2 35 35 H 1.08698 * 110.43697 * 298.85316 * 7 6 3 36 36 H 1.00908 * 110.99660 * 322.47954 * 8 7 6 37 37 H 1.09000 * 109.47364 * 300.00272 * 9 8 7 38 38 H 1.08993 * 109.46869 * 60.00287 * 9 8 7 39 39 H 1.09000 * 109.47217 * 300.00092 * 10 9 8 40 40 H 1.09002 * 109.47299 * 60.00297 * 10 9 8 41 41 H 1.09000 * 109.47219 * 300.00010 * 11 10 9 42 42 H 1.09002 * 109.46992 * 60.00029 * 11 10 9 43 43 H 0.97001 * 120.00261 * 180.02562 * 15 14 12 44 44 H 1.09233 * 109.37637 * 179.37597 * 20 7 6 45 45 H 1.09232 * 109.38035 * 60.27522 * 20 7 6 46 46 H 1.09001 * 109.47287 * 59.99715 * 22 21 2 47 47 H 1.08997 * 109.47585 * 180.02562 * 22 21 2 48 48 H 1.09008 * 109.47214 * 300.00041 * 22 21 2 49 49 H 1.09007 * 109.47358 * 60.00301 * 23 21 2 50 50 H 1.09005 * 109.47431 * 179.97438 * 23 21 2 51 51 H 1.09003 * 109.47487 * 300.00321 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0156 1.3408 0.0000 4 6 1.6309 2.0184 -1.3342 5 6 1.4111 2.1852 1.1281 6 6 3.5384 1.3643 0.1050 7 6 4.0075 0.4672 1.2501 8 7 5.4782 0.4911 1.3138 9 6 5.9517 1.6191 2.1272 10 6 7.4810 1.6109 2.1693 11 6 7.9741 2.7852 3.0170 12 6 9.4806 2.7769 3.0590 13 1 10.0311 2.0103 2.5339 14 6 10.1558 3.7472 3.7686 15 7 9.4854 4.6797 4.4092 16 14 12.0230 3.7363 3.8212 17 1 12.5341 2.5907 3.0265 18 1 12.5417 5.0056 3.2510 19 1 12.4778 3.6037 5.2287 20 6 3.5387 -0.9607 0.9719 21 6 2.0156 -1.0112 0.8805 22 6 1.4139 -0.9054 2.2869 23 6 1.6288 -2.3984 0.3211 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.0325 3.0315 -1.3563 28 1 0.5452 2.0559 -1.4229 29 1 2.0437 1.4458 -2.1648 30 1 0.3276 2.2210 1.0147 31 1 1.6611 1.7384 2.0904 32 1 1.8149 3.1967 1.0814 33 1 3.9730 1.0117 -0.8331 34 1 3.8745 2.3879 0.2856 35 1 3.6075 0.8204 2.1971 36 1 5.8798 0.5189 0.3885 37 1 5.6056 2.5546 1.6877 38 1 5.5595 1.5265 3.1399 39 1 7.8274 0.6754 2.6086 40 1 7.8729 1.7036 1.1564 41 1 7.6277 3.7209 2.5781 42 1 7.5823 2.6920 4.0299 43 1 9.9604 5.3626 4.9081 44 1 3.8766 -1.6165 1.7776 45 1 3.9711 -1.3073 0.0306 46 1 0.3337 -1.0399 2.2310 47 1 1.8440 -1.6772 2.9252 48 1 1.6366 0.0766 2.7044 49 1 2.0398 -2.5132 -0.6820 50 1 2.0312 -3.1768 0.9694 51 1 0.5429 -2.4840 0.2807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171620727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = -17.644352 kcal Electronic energy + Delta-G solvation = -23735.748879 eV Core-core repulsion = 20668.982741 eV Total energy + Delta-G solvation = -3066.766137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58217 -36.64751 -35.29572 -33.93947 -32.26695 -30.48079 -28.77840 -27.89584 -26.81113 -26.43917 -26.27588 -25.20328 -22.44158 -21.06380 -20.82063 -19.99489 -17.77859 -16.28504 -16.16263 -15.95570 -15.15941 -14.91016 -14.54152 -14.42383 -14.22742 -13.88922 -13.47195 -13.39094 -13.07399 -12.94907 -12.62331 -12.46164 -12.33124 -12.14876 -11.91673 -11.78092 -11.60447 -11.58836 -11.45936 -11.43597 -11.26390 -10.88171 -10.79252 -10.69028 -10.55318 -10.54978 -10.42105 -10.20398 -9.66291 -9.28269 -9.00433 -8.32352 -8.08395 -8.04099 -5.97313 -3.99167 3.32904 3.40177 3.44943 3.57142 4.26496 4.49290 4.62029 4.63446 4.74092 4.83984 4.93766 5.18536 5.20132 5.20769 5.30031 5.37518 5.38580 5.42995 5.49295 5.51274 5.55383 5.58606 5.65244 5.70592 5.72994 5.77036 5.78267 5.88995 5.92008 5.95667 5.97337 6.03767 6.04725 6.10398 6.20888 6.22519 6.34625 6.36993 6.76361 6.82349 7.14644 7.17500 7.40403 7.46947 7.69370 7.72203 7.86962 8.03477 8.47025 9.08379 9.64788 11.14200 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.002999 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.485619 B = 9332.889109 C = 9689.811150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.571 5.571 3 C 0.148 3.852 4 C -0.142 4.142 5 C -0.183 4.183 6 C -0.138 4.138 7 C 0.088 3.912 8 N -0.686 5.686 9 C 0.060 3.940 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.096 4.096 21 C 0.143 3.857 22 C -0.181 4.181 23 C -0.142 4.142 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.337 0.663 37 H 0.023 0.977 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.987 -10.307 -9.813 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.296 5.296 3 C 0.058 3.942 4 C -0.200 4.200 5 C -0.242 4.242 6 C -0.177 4.177 7 C -0.023 4.023 8 N -0.315 5.315 9 C -0.068 4.068 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.134 4.134 21 C 0.053 3.947 22 C -0.240 4.240 23 C -0.200 4.200 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.155 0.845 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.763 -10.744 -9.527 25.245 hybrid contribution 0.601 1.254 0.255 1.414 sum -20.161 -9.490 -9.271 24.135 Atomic orbital electron populations 1.22215 0.86439 1.01679 1.00304 1.56470 1.06169 1.08704 1.58207 1.20319 0.93755 0.85643 0.94487 1.22317 1.01086 0.99758 0.96867 1.22709 1.01099 1.00747 0.99642 1.22365 0.94196 1.01026 1.00127 1.21484 0.88643 0.94743 0.97413 1.60780 1.05441 1.46387 1.18937 1.22129 0.97722 0.90118 0.96849 1.21620 0.91321 1.01132 1.00415 1.19069 0.95725 0.92148 0.94633 1.21305 0.91954 1.11568 1.30723 0.92617 1.25034 0.98385 0.95602 0.95563 1.69977 1.35249 1.15273 1.33160 0.86545 0.85910 0.77872 0.77737 1.19706 1.21065 1.21034 1.21584 0.92299 0.96881 1.02644 1.20443 0.94240 0.90665 0.89352 1.22716 1.00818 1.02334 0.98108 1.22326 1.00957 0.95306 1.01370 0.91840 0.91514 0.95431 0.92507 0.92850 0.92150 0.92489 0.92422 0.92114 0.91246 0.91364 0.90726 0.84520 0.95882 0.91753 0.92605 0.93693 0.96866 0.96647 0.93124 0.90736 0.91447 0.92803 0.92073 0.92485 0.92113 0.92388 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 7.54 60.06 0.45 0.78 16 2 N -0.57 -5.42 3.54 -212.79 -0.75 -6.18 16 3 C 0.15 1.48 0.69 -131.94 -0.09 1.39 16 4 C -0.14 -1.30 8.11 37.95 0.31 -0.99 16 5 C -0.18 -1.84 7.58 37.33 0.28 -1.55 16 6 C -0.14 -1.58 3.92 -26.99 -0.11 -1.68 16 7 C 0.09 1.09 2.34 -67.69 -0.16 0.93 16 8 N -0.69 -10.11 6.25 -106.78 -0.67 -10.78 16 9 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.10 -1.06 4.27 -26.98 -0.12 -1.18 16 21 C 0.14 1.37 0.68 -131.94 -0.09 1.28 16 22 C -0.18 -1.70 7.64 37.33 0.29 -1.42 16 23 C -0.14 -1.19 8.16 37.94 0.31 -0.89 16 24 H 0.06 0.48 6.41 -51.93 -0.33 0.15 16 25 H 0.07 0.49 5.82 -51.93 -0.30 0.19 16 26 H 0.03 0.23 5.82 -51.93 -0.30 -0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.44 6.48 -51.93 -0.34 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 6.42 -51.93 -0.33 0.19 16 31 H 0.06 0.63 4.98 -51.93 -0.26 0.37 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.07 0.80 8.02 -51.79 -0.42 0.38 16 34 H 0.07 0.85 7.43 -51.79 -0.38 0.46 16 35 H 0.07 1.02 6.04 -52.10 -0.31 0.71 16 36 H 0.34 4.74 8.42 -39.29 -0.33 4.41 16 37 H 0.02 0.41 7.52 -51.93 -0.39 0.02 16 38 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 0.87 8.02 -51.80 -0.42 0.45 16 45 H 0.07 0.77 8.07 -51.80 -0.42 0.35 16 46 H 0.05 0.46 6.96 -51.93 -0.36 0.10 16 47 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 48 H 0.06 0.60 5.00 -51.92 -0.26 0.34 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.05 0.41 6.18 -51.93 -0.32 0.09 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -29.66 368.28 -9.45 -39.11 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -9.66 Total: -0.01 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 0.36 Total: -18.02 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.68 Total: -43.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.66 -9.45 -39.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171620727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.466 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds