Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46767 * 2 1 4 4 H 1.09000 * 109.46936 * 306.86031 * 3 2 1 5 5 C 1.50701 * 109.46893 * 186.86331 * 3 2 1 6 6 H 1.07993 * 120.00019 * 243.89977 * 5 3 2 7 7 C 1.37883 * 119.99716 * 63.90294 * 5 3 2 8 8 N 1.31511 * 119.99567 * 192.83117 * 7 5 3 9 9 Si 1.86800 * 119.99968 * 12.83560 * 7 5 3 10 10 H 1.48503 * 109.47363 * 94.14010 * 9 7 5 11 11 H 1.48507 * 109.46605 * 214.13339 * 9 7 5 12 12 H 1.48492 * 109.47040 * 334.13337 * 9 7 5 13 13 N 1.46902 * 109.46950 * 66.86352 * 3 2 1 14 14 C 1.47224 * 110.99884 * 269.67278 * 13 3 2 15 15 C 1.52837 * 109.22893 * 150.92324 * 14 13 3 16 16 C 1.52667 * 110.40226 * 179.05807 * 15 14 13 17 17 C 1.53346 * 109.52103 * 75.33585 * 16 15 14 18 18 C 1.54500 * 107.51803 * 191.49527 * 16 15 14 19 19 N 1.44789 * 113.00248 * 310.81060 * 16 15 14 20 20 C 1.46902 * 112.18075 * 175.71997 * 19 16 15 21 21 C 1.44799 * 120.28185 * 40.48018 * 19 16 15 22 22 C 1.54492 * 108.20355 * 200.49328 * 21 19 16 23 23 C 1.53329 * 111.18625 * 83.00740 * 21 19 16 24 24 C 1.52669 * 112.94561 * 319.40623 * 21 19 16 25 25 H 1.09003 * 109.47288 * 302.38388 * 1 2 3 26 26 H 1.09001 * 109.47608 * 62.39003 * 1 2 3 27 27 H 1.08998 * 109.47147 * 182.38756 * 1 2 3 28 28 H 1.08995 * 109.47490 * 240.00669 * 2 1 3 29 29 H 1.08999 * 109.47088 * 119.99325 * 2 1 3 30 30 H 0.96999 * 119.99539 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99607 * 145.72088 * 13 3 2 32 32 H 1.08694 * 108.93833 * 30.21372 * 14 13 3 33 33 H 1.09234 * 109.38944 * 58.56966 * 15 14 13 34 34 H 1.09244 * 109.36717 * 299.51561 * 15 14 13 35 35 H 1.08998 * 109.46615 * 176.36343 * 17 16 15 36 36 H 1.08992 * 109.46788 * 296.36134 * 17 16 15 37 37 H 1.08995 * 109.46758 * 56.36393 * 17 16 15 38 38 H 1.09008 * 109.47202 * 302.31966 * 18 16 15 39 39 H 1.09000 * 109.47146 * 62.32009 * 18 16 15 40 40 H 1.09008 * 109.47345 * 182.32409 * 18 16 15 41 41 H 1.08996 * 109.47094 * 59.99659 * 20 19 16 42 42 H 1.09001 * 109.47244 * 180.02562 * 20 19 16 43 43 H 1.09002 * 109.47177 * 299.99922 * 20 19 16 44 44 H 1.09001 * 109.46989 * 182.29319 * 22 21 19 45 45 H 1.08994 * 109.46851 * 302.29300 * 22 21 19 46 46 H 1.09000 * 109.47261 * 62.29626 * 22 21 19 47 47 H 1.09001 * 109.47298 * 294.47285 * 23 21 19 48 48 H 1.09001 * 109.46773 * 54.46677 * 23 21 19 49 49 H 1.08992 * 109.47214 * 174.46571 * 23 21 19 50 50 H 1.09235 * 109.44481 * 288.99258 * 24 21 19 51 51 H 1.09235 * 109.44074 * 169.82943 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5797 1.9906 -0.8222 5 6 3.5373 1.4460 -0.1698 6 1 4.1694 1.8249 0.6196 7 6 4.1003 0.9654 -1.3331 8 7 5.3931 0.7312 -1.3900 9 14 3.0266 0.6472 -2.8282 10 1 3.0413 1.8409 -3.7114 11 1 3.5505 -0.5260 -3.5730 12 1 1.6348 0.3734 -2.3889 13 7 1.6900 2.0856 1.2736 14 6 0.3761 2.7444 1.1886 15 6 -0.2733 2.7528 2.5721 16 6 -1.6295 3.4517 2.5192 17 6 -2.6583 2.5248 1.8604 18 6 -2.0902 3.6838 3.9756 19 7 -1.5789 4.7353 1.8512 20 6 -2.9087 5.3458 1.7214 21 6 -0.7804 4.9050 0.6553 22 6 -0.4977 6.4130 0.4736 23 6 -1.5403 4.4327 -0.5899 24 6 0.5666 4.1908 0.7326 25 1 -0.3634 0.5504 0.8679 26 1 -0.3634 0.4763 -0.9106 27 1 -0.3633 -1.0267 0.0428 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 5.7892 0.3935 -2.2084 31 1 2.4046 2.7392 1.5570 32 1 -0.2454 2.2019 0.4808 33 1 0.3783 3.2762 3.2754 34 1 -0.4076 1.7244 2.9155 35 1 -3.6398 2.9985 1.8813 36 1 -2.3679 2.3360 0.8270 37 1 -2.6984 1.5815 2.4048 38 1 -2.1362 2.7285 4.4987 39 1 -1.3820 4.3408 4.4804 40 1 -3.0776 4.1456 3.9751 41 1 -3.3377 5.4962 2.7120 42 1 -2.8196 6.3064 1.2139 43 1 -3.5556 4.6876 1.1414 44 1 0.0687 6.5684 -0.4446 45 1 -1.4415 6.9550 0.4145 46 1 0.0792 6.7794 1.3228 47 1 -1.7032 3.3566 -0.5298 48 1 -2.5019 4.9432 -0.6441 49 1 -0.9562 4.6626 -1.4810 50 1 1.2144 4.7119 1.4411 51 1 1.0406 4.2011 -0.2515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171623975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = 2.056368 kcal Electronic energy + Delta-G solvation = -25329.626119 eV Core-core repulsion = 22263.714270 eV Total energy + Delta-G solvation = -3065.911850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34608 -36.75803 -35.06459 -33.44401 -31.85492 -30.39643 -28.72244 -27.70599 -26.81592 -26.60301 -25.98467 -25.16336 -22.52186 -20.63831 -20.54640 -19.72829 -17.50641 -16.79239 -15.88419 -15.65026 -15.32075 -14.47821 -14.35786 -14.05302 -13.70892 -13.52034 -13.22438 -12.88725 -12.81549 -12.72722 -12.64251 -12.35207 -12.24568 -12.10307 -11.80168 -11.68100 -11.63370 -11.47880 -11.35427 -11.24818 -10.98216 -10.89131 -10.84213 -10.64616 -10.52308 -10.15539 -10.02904 -9.84014 -9.77091 -9.20300 -9.04794 -8.47896 -7.84393 -7.36911 -6.11478 -4.07331 3.25933 3.36147 3.39424 3.80467 4.40433 4.72650 4.89620 4.93915 5.00448 5.14720 5.19859 5.25301 5.37411 5.49033 5.51794 5.58479 5.64991 5.67826 5.69182 5.73248 5.82134 5.83729 5.90420 5.93167 5.94693 6.01752 6.03555 6.07653 6.10552 6.21501 6.23480 6.24441 6.26322 6.32577 6.39478 6.45580 6.53172 6.68053 6.74286 6.77816 7.01088 7.06987 7.38905 7.47288 7.68568 7.70606 8.02016 8.41782 8.65475 8.97787 9.54342 11.01613 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.005563 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.784232 B = 5032.437553 C = 5352.364494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C 0.194 3.806 4 H -0.003 1.003 5 C -0.525 4.525 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.674 5.674 14 C 0.078 3.922 15 C -0.095 4.095 16 C 0.143 3.857 17 C -0.181 4.181 18 C -0.140 4.140 19 N -0.570 5.570 20 C 0.041 3.959 21 C 0.147 3.853 22 C -0.142 4.142 23 C -0.180 4.180 24 C -0.136 4.136 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.263 0.737 31 H 0.339 0.661 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.267 7.905 5.684 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C 0.085 3.915 4 H 0.015 0.985 5 C -0.563 4.563 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.688 3.312 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.304 5.304 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.054 3.946 17 C -0.240 4.240 18 C -0.198 4.198 19 N -0.295 5.295 20 C -0.106 4.106 21 C 0.057 3.943 22 C -0.200 4.200 23 C -0.239 4.239 24 C -0.175 4.175 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.110 7.441 6.112 19.634 hybrid contribution -0.572 0.114 -2.114 2.193 sum -17.683 7.555 3.998 19.640 Atomic orbital electron populations 1.22044 0.98988 0.99757 1.00558 1.21894 0.92460 0.99643 1.00901 1.19414 0.95625 0.90563 0.85886 0.98532 1.21143 0.89539 1.42575 1.03005 0.90581 1.24890 0.94712 0.94370 0.98614 1.69962 1.11202 1.44375 1.27519 0.87267 0.82688 0.77877 0.83382 1.20986 1.21349 1.17214 1.60705 1.02240 1.34392 1.33062 1.21748 0.93560 0.91825 0.96142 1.21592 0.93758 1.00035 0.97958 1.20440 0.95145 0.86058 0.92983 1.22687 0.99511 1.00194 1.01591 1.22295 1.00803 1.01282 0.95436 1.56460 1.16312 1.25176 1.31509 1.22206 0.88904 0.98525 1.00978 1.20365 0.92545 0.95156 0.86231 1.22344 1.01080 0.95058 1.01548 1.22701 1.00545 1.01601 0.99102 1.22377 0.95360 0.97415 1.02388 0.92039 0.94572 0.94609 0.93117 0.92203 0.92712 0.84297 0.90037 0.91647 0.91117 0.92861 0.92509 0.92205 0.92565 0.92184 0.93147 0.91941 0.91672 0.95591 0.92548 0.92988 0.92173 0.92528 0.92871 0.92275 0.91422 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.66 37.16 0.32 -2.55 16 2 C -0.11 -2.43 4.77 -26.73 -0.13 -2.56 16 3 C 0.19 4.46 1.68 -68.86 -0.12 4.34 16 4 H 0.00 -0.07 6.30 -51.93 -0.33 -0.40 16 5 C -0.52 -14.39 9.03 -34.44 -0.31 -14.70 16 6 H 0.08 2.27 7.82 -52.49 -0.41 1.86 16 7 C 0.08 2.18 5.35 -17.82 -0.10 2.08 16 8 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.86 21.12 25.71 -169.99 -4.37 16.75 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.25 -5.74 5.33 56.52 0.30 -5.44 16 13 N -0.67 -13.32 6.01 -101.01 -0.61 -13.93 16 14 C 0.08 1.27 1.14 -67.70 -0.08 1.19 16 15 C -0.09 -1.35 4.17 -26.99 -0.11 -1.47 16 16 C 0.14 1.74 0.69 -131.94 -0.09 1.65 16 17 C -0.18 -2.11 7.58 37.34 0.28 -1.83 16 18 C -0.14 -1.49 8.11 37.94 0.31 -1.18 16 19 N -0.57 -6.85 3.54 -212.78 -0.75 -7.61 16 20 C 0.04 0.41 7.53 60.07 0.45 0.87 16 21 C 0.15 1.90 0.68 -131.95 -0.09 1.81 16 22 C -0.14 -1.66 8.21 37.94 0.31 -1.35 16 23 C -0.18 -2.30 7.74 37.33 0.29 -2.01 16 24 C -0.14 -2.10 3.94 -26.98 -0.11 -2.20 16 25 H 0.06 1.07 5.48 -51.93 -0.28 0.78 16 26 H 0.04 0.66 8.10 -51.93 -0.42 0.23 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.18 4.67 -51.93 -0.24 0.94 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.34 6.87 7.75 -39.29 -0.30 6.57 16 32 H 0.08 1.41 3.25 -52.10 -0.17 1.24 16 33 H 0.06 0.96 8.07 -51.80 -0.42 0.55 16 34 H 0.07 1.04 7.92 -51.79 -0.41 0.63 16 35 H 0.05 0.56 6.42 -51.93 -0.33 0.23 16 36 H 0.06 0.74 5.11 -51.93 -0.27 0.47 16 37 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.48 6.48 -51.92 -0.34 0.15 16 41 H 0.06 0.58 6.41 -51.93 -0.33 0.25 16 42 H 0.06 0.62 5.80 -51.93 -0.30 0.32 16 43 H 0.03 0.26 5.70 -51.93 -0.30 -0.03 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.54 6.09 -51.93 -0.32 0.22 16 46 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.06 0.78 5.05 -51.93 -0.26 0.52 16 48 H 0.05 0.60 6.66 -51.93 -0.35 0.25 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 1.05 8.00 -51.80 -0.41 0.64 16 51 H 0.07 1.18 7.87 -51.80 -0.41 0.77 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -28.36 350.36 -8.05 -36.41 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -9.21 Total: 7.26 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 0.84 Total: -17.91 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.59 Total: -47.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.37 Total: 16.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.36 -8.05 -36.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171623975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.471 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds