Wall clock time and date at job start Tue Mar 31 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47059 * 2 1 4 4 H 1.09000 * 109.47085 * 56.61158 * 3 2 1 5 5 C 1.50704 * 109.47060 * 176.60894 * 3 2 1 6 6 H 1.08001 * 119.99514 * 114.52973 * 5 3 2 7 7 C 1.37875 * 120.00251 * 294.53424 * 5 3 2 8 8 N 1.31515 * 120.00218 * 169.42955 * 7 5 3 9 9 Si 1.86804 * 119.99774 * 349.42469 * 7 5 3 10 10 H 1.48499 * 109.46861 * 271.71037 * 9 7 5 11 11 H 1.48498 * 109.47251 * 31.71121 * 9 7 5 12 12 H 1.48505 * 109.46988 * 151.71233 * 9 7 5 13 13 N 1.46893 * 109.47025 * 296.60906 * 3 2 1 14 14 C 1.47239 * 110.99992 * 154.72674 * 13 3 2 15 15 C 1.52841 * 109.22803 * 272.71673 * 14 13 3 16 16 C 1.52668 * 110.35709 * 180.83764 * 15 14 13 17 17 C 1.53336 * 109.52680 * 284.88129 * 16 15 14 18 18 C 1.54495 * 107.52857 * 168.70097 * 16 15 14 19 19 N 1.44802 * 112.95399 * 49.39375 * 16 15 14 20 20 C 1.46903 * 112.17680 * 184.17218 * 19 16 15 21 21 C 1.44787 * 120.27692 * 319.41762 * 19 16 15 22 22 C 1.53335 * 111.17408 * 276.86726 * 21 19 16 23 23 C 1.54505 * 108.19060 * 159.41455 * 21 19 16 24 24 C 1.52666 * 113.00079 * 40.48927 * 21 19 16 25 25 H 1.09000 * 109.46959 * 185.18478 * 1 2 3 26 26 H 1.09000 * 109.47102 * 305.18323 * 1 2 3 27 27 H 1.09001 * 109.47525 * 65.18401 * 1 2 3 28 28 H 1.09004 * 109.47274 * 240.00416 * 2 1 3 29 29 H 1.08996 * 109.47858 * 119.99927 * 2 1 3 30 30 H 0.97001 * 119.99696 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00487 * 278.68186 * 13 3 2 32 32 H 1.08702 * 108.93860 * 33.43384 * 14 13 3 33 33 H 1.09229 * 109.38003 * 301.29357 * 15 14 13 34 34 H 1.09237 * 109.38287 * 60.38468 * 15 14 13 35 35 H 1.09003 * 109.46900 * 185.53668 * 17 16 15 36 36 H 1.09001 * 109.47630 * 305.53169 * 17 16 15 37 37 H 1.08996 * 109.47368 * 65.53777 * 17 16 15 38 38 H 1.09002 * 109.46595 * 297.70147 * 18 16 15 39 39 H 1.09000 * 109.47508 * 57.69798 * 18 16 15 40 40 H 1.08996 * 109.47447 * 177.70276 * 18 16 15 41 41 H 1.09003 * 109.46886 * 198.95785 * 20 19 16 42 42 H 1.08996 * 109.47550 * 318.95864 * 20 19 16 43 43 H 1.08998 * 109.46825 * 78.95905 * 20 19 16 44 44 H 1.09000 * 109.47417 * 185.58364 * 22 21 19 45 45 H 1.08999 * 109.47080 * 305.59081 * 22 21 19 46 46 H 1.09006 * 109.46935 * 65.58030 * 22 21 19 47 47 H 1.09000 * 109.47219 * 297.65799 * 23 21 19 48 48 H 1.09001 * 109.47046 * 57.65383 * 23 21 19 49 49 H 1.08996 * 109.47298 * 177.65056 * 23 21 19 50 50 H 1.09252 * 109.42806 * 190.36875 * 24 21 19 51 51 H 1.09241 * 109.44236 * 71.23666 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6278 1.9736 0.8581 5 6 3.5446 1.4434 0.0840 6 1 4.1314 1.8152 -0.7430 7 6 4.1721 0.9695 1.2166 8 7 5.4727 0.7746 1.2150 9 14 3.1748 0.6043 2.7533 10 1 3.0732 1.8331 3.5810 11 1 1.8138 0.1551 2.3651 12 1 3.8449 -0.4655 3.5356 13 7 1.6183 2.1110 -1.2382 14 6 1.5377 3.5690 -1.0497 15 6 0.1509 3.9322 -0.5197 16 6 0.0321 5.4429 -0.3342 17 6 0.8089 5.8682 0.9175 18 6 -1.4573 5.7646 -0.0792 19 7 0.4636 6.1903 -1.4970 20 6 0.4351 7.6407 -1.2658 21 6 1.6386 5.7774 -2.2354 22 6 2.9192 6.3101 -1.5816 23 6 1.5590 6.3913 -3.6510 24 6 1.7402 4.2626 -2.3965 25 1 -0.3633 -1.0235 0.0929 26 1 -0.3633 0.5921 0.8399 27 1 -0.3634 0.4313 -0.9327 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9141 0.4409 2.0117 31 1 2.2347 1.8787 -2.0026 32 1 2.3061 3.8766 -0.3450 33 1 -0.6082 3.5920 -1.2276 34 1 -0.0127 3.4342 0.4387 35 1 0.6432 6.9292 1.1048 36 1 0.4627 5.2897 1.7741 37 1 1.8728 5.6882 0.7636 38 1 -2.0457 5.4755 -0.9500 39 1 -1.8043 5.2116 0.7936 40 1 -1.5728 6.8338 0.0986 41 1 0.4334 8.1613 -2.2235 42 1 -0.4644 7.9022 -0.7085 43 1 1.3152 7.9348 -0.6939 44 1 3.7760 6.0687 -2.2107 45 1 2.8458 7.3915 -1.4668 46 1 3.0461 5.8487 -0.6021 47 1 0.6803 6.0036 -4.1663 48 1 1.4853 7.4760 -3.5730 49 1 2.4553 6.1275 -4.2123 50 1 2.7251 4.0045 -2.7926 51 1 0.9773 3.9197 -3.0992 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171623976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:25 Heat of formation + Delta-G solvation = -2.418794 kcal Electronic energy + Delta-G solvation = -25216.720128 eV Core-core repulsion = 22150.614220 eV Total energy + Delta-G solvation = -3066.105907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18964 -36.51673 -34.97548 -33.50462 -31.90129 -30.33338 -28.50207 -27.56543 -26.62689 -26.49233 -25.96738 -25.17713 -22.47610 -20.57382 -20.42711 -19.51948 -17.30528 -16.98148 -15.73467 -15.59112 -14.98694 -14.65529 -14.32837 -13.92958 -13.75576 -13.48972 -13.04198 -12.84302 -12.83205 -12.67485 -12.60068 -12.37806 -12.08720 -11.82846 -11.62632 -11.60695 -11.51763 -11.33715 -11.26001 -11.14516 -11.06311 -10.81252 -10.73310 -10.57184 -10.40638 -10.18548 -9.96096 -9.72128 -9.63763 -9.38057 -9.04875 -8.49046 -7.75251 -7.28201 -6.13138 -4.11055 3.25833 3.35559 3.38539 3.89235 4.39302 4.80277 4.97971 5.03258 5.10238 5.20005 5.28299 5.30755 5.47792 5.59272 5.66835 5.69325 5.71820 5.77581 5.79396 5.84839 5.90887 5.93088 6.00126 6.03924 6.10017 6.11918 6.16575 6.17432 6.25404 6.30224 6.32426 6.38348 6.40030 6.43503 6.50347 6.59917 6.61338 6.75310 6.84391 6.91255 7.11363 7.24254 7.40654 7.48888 7.62353 7.78896 8.10199 8.43185 8.54226 8.92406 9.53097 11.00017 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.005862 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.023698 B = 4775.413141 C = 5008.214893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.189 3.811 4 H 0.025 0.975 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.241 1.241 12 H -0.289 1.289 13 N -0.678 5.678 14 C 0.092 3.908 15 C -0.092 4.092 16 C 0.143 3.857 17 C -0.181 4.181 18 C -0.140 4.140 19 N -0.570 5.570 20 C 0.040 3.960 21 C 0.147 3.853 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.333 0.667 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 11.387 -4.949 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.080 3.920 4 H 0.043 0.957 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.165 1.165 12 H -0.215 1.215 13 N -0.307 5.307 14 C -0.018 4.018 15 C -0.131 4.131 16 C 0.054 3.946 17 C -0.240 4.240 18 C -0.198 4.198 19 N -0.294 5.294 20 C -0.107 4.107 21 C 0.058 3.942 22 C -0.242 4.242 23 C -0.198 4.198 24 C -0.146 4.146 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.938 11.095 -4.988 17.043 hybrid contribution 1.400 0.170 1.602 2.134 sum -10.538 11.264 -3.386 15.792 Atomic orbital electron populations 1.21694 0.97955 0.98753 1.01210 1.21941 0.93431 0.99241 1.00847 1.19472 0.93669 0.90596 0.88311 0.95666 1.21734 0.90510 1.42908 1.03254 0.91233 1.24960 0.94630 0.94295 0.98753 1.69963 1.09219 1.45149 1.29032 0.87362 0.82355 0.78237 0.83498 1.20809 1.16517 1.21520 1.60887 1.55801 1.05737 1.08271 1.21246 0.95844 0.89297 0.95438 1.21572 0.98143 0.91772 1.01565 1.20448 0.93866 0.93645 0.86686 1.22709 1.01631 1.00724 0.98937 1.22315 0.95479 1.00680 1.01331 1.56488 1.38929 1.03650 1.30314 1.22207 1.00401 0.87356 1.00689 1.20348 0.86540 0.94825 0.92524 1.22698 0.98637 1.00789 1.02049 1.22301 1.01537 1.00234 0.95756 1.21771 1.01914 0.92589 0.98318 0.95232 0.94463 0.92294 0.93004 0.92659 0.92777 0.84959 0.92959 0.91369 0.91857 0.93133 0.92352 0.92141 0.92206 0.92632 0.93104 0.92014 0.91713 0.95497 0.92274 0.92833 0.92073 0.92275 0.93044 0.92651 0.91704 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.72 37.15 0.36 -2.20 16 2 C -0.12 -2.52 4.92 -26.73 -0.13 -2.65 16 3 C 0.19 4.29 1.37 -68.86 -0.09 4.20 16 4 H 0.03 0.61 6.08 -51.93 -0.32 0.29 16 5 C -0.55 -14.78 8.76 -34.44 -0.30 -15.08 16 6 H 0.07 2.06 7.94 -52.49 -0.42 1.64 16 7 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.86 21.00 25.85 -169.99 -4.39 16.60 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.24 -5.51 5.12 56.52 0.29 -5.22 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.68 -13.25 5.53 -101.01 -0.56 -13.81 16 14 C 0.09 1.62 2.15 -67.69 -0.15 1.48 16 15 C -0.09 -1.46 4.17 -26.98 -0.11 -1.58 16 16 C 0.14 1.95 0.68 -131.94 -0.09 1.86 16 17 C -0.18 -2.55 7.64 37.33 0.29 -2.26 16 18 C -0.14 -1.65 8.16 37.94 0.31 -1.34 16 19 N -0.57 -7.33 3.54 -212.78 -0.75 -8.08 16 20 C 0.04 0.44 7.55 60.07 0.45 0.90 16 21 C 0.15 1.96 0.68 -131.94 -0.09 1.87 16 22 C -0.18 -2.52 7.66 37.33 0.29 -2.24 16 23 C -0.14 -1.61 8.17 37.95 0.31 -1.30 16 24 C -0.11 -1.63 3.92 -26.99 -0.11 -1.74 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.27 4.43 -51.93 -0.23 1.04 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.33 6.65 7.99 -39.29 -0.31 6.34 16 32 H 0.05 1.09 5.80 -52.10 -0.30 0.79 16 33 H 0.07 1.09 8.07 -51.80 -0.42 0.67 16 34 H 0.06 1.09 7.46 -51.80 -0.39 0.70 16 35 H 0.05 0.63 6.96 -51.93 -0.36 0.27 16 36 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.06 0.96 5.09 -51.93 -0.26 0.70 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.54 6.18 -51.93 -0.32 0.22 16 41 H 0.06 0.62 6.36 -51.93 -0.33 0.29 16 42 H 0.06 0.66 5.82 -51.93 -0.30 0.35 16 43 H 0.03 0.30 5.74 -51.93 -0.30 0.01 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.66 6.22 -51.93 -0.32 0.34 16 46 H 0.06 0.97 5.03 -51.93 -0.26 0.71 16 47 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.05 0.54 6.37 -51.93 -0.33 0.21 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.06 1.02 8.05 -51.79 -0.42 0.60 16 51 H 0.07 1.05 8.05 -51.79 -0.42 0.63 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -28.18 356.14 -8.19 -36.37 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -9.46 Total: 7.90 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 0.84 Total: -18.01 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.54 Total: -48.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.39 Total: 16.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.18 -8.19 -36.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171623976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.949 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds