Wall clock time and date at job start Tue Mar 31 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47059 * 2 1 4 4 H 1.09000 * 109.47085 * 56.61158 * 3 2 1 5 5 C 1.50704 * 109.47060 * 176.60894 * 3 2 1 6 6 H 1.08001 * 119.99514 * 114.52973 * 5 3 2 7 7 C 1.37875 * 120.00251 * 294.53424 * 5 3 2 8 8 N 1.31515 * 120.00218 * 169.42955 * 7 5 3 9 9 Si 1.86804 * 119.99774 * 349.42469 * 7 5 3 10 10 H 1.48499 * 109.46861 * 271.71037 * 9 7 5 11 11 H 1.48498 * 109.47251 * 31.71121 * 9 7 5 12 12 H 1.48505 * 109.46988 * 151.71233 * 9 7 5 13 13 N 1.46893 * 109.47025 * 296.60906 * 3 2 1 14 14 C 1.47239 * 110.99992 * 154.72674 * 13 3 2 15 15 C 1.52841 * 109.22803 * 272.71673 * 14 13 3 16 16 C 1.52668 * 110.35709 * 180.83764 * 15 14 13 17 17 C 1.53336 * 109.52680 * 284.88129 * 16 15 14 18 18 C 1.54495 * 107.52857 * 168.70097 * 16 15 14 19 19 N 1.44802 * 112.95399 * 49.39375 * 16 15 14 20 20 C 1.46903 * 112.17680 * 184.17218 * 19 16 15 21 21 C 1.44787 * 120.27692 * 319.41762 * 19 16 15 22 22 C 1.53335 * 111.17408 * 276.86726 * 21 19 16 23 23 C 1.54505 * 108.19060 * 159.41455 * 21 19 16 24 24 C 1.52666 * 113.00079 * 40.48927 * 21 19 16 25 25 H 1.09000 * 109.46959 * 185.18478 * 1 2 3 26 26 H 1.09000 * 109.47102 * 305.18323 * 1 2 3 27 27 H 1.09001 * 109.47525 * 65.18401 * 1 2 3 28 28 H 1.09004 * 109.47274 * 240.00416 * 2 1 3 29 29 H 1.08996 * 109.47858 * 119.99927 * 2 1 3 30 30 H 0.97001 * 119.99696 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00487 * 278.68186 * 13 3 2 32 32 H 1.08702 * 108.93860 * 33.43384 * 14 13 3 33 33 H 1.09229 * 109.38003 * 301.29357 * 15 14 13 34 34 H 1.09237 * 109.38287 * 60.38468 * 15 14 13 35 35 H 1.09003 * 109.46900 * 185.53668 * 17 16 15 36 36 H 1.09001 * 109.47630 * 305.53169 * 17 16 15 37 37 H 1.08996 * 109.47368 * 65.53777 * 17 16 15 38 38 H 1.09002 * 109.46595 * 297.70147 * 18 16 15 39 39 H 1.09000 * 109.47508 * 57.69798 * 18 16 15 40 40 H 1.08996 * 109.47447 * 177.70276 * 18 16 15 41 41 H 1.09003 * 109.46886 * 198.95785 * 20 19 16 42 42 H 1.08996 * 109.47550 * 318.95864 * 20 19 16 43 43 H 1.08998 * 109.46825 * 78.95905 * 20 19 16 44 44 H 1.09000 * 109.47417 * 185.58364 * 22 21 19 45 45 H 1.08999 * 109.47080 * 305.59081 * 22 21 19 46 46 H 1.09006 * 109.46935 * 65.58030 * 22 21 19 47 47 H 1.09000 * 109.47219 * 297.65799 * 23 21 19 48 48 H 1.09001 * 109.47046 * 57.65383 * 23 21 19 49 49 H 1.08996 * 109.47298 * 177.65056 * 23 21 19 50 50 H 1.09252 * 109.42806 * 190.36875 * 24 21 19 51 51 H 1.09241 * 109.44236 * 71.23666 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6278 1.9736 0.8581 5 6 3.5446 1.4434 0.0840 6 1 4.1314 1.8152 -0.7430 7 6 4.1721 0.9695 1.2166 8 7 5.4727 0.7746 1.2150 9 14 3.1748 0.6043 2.7533 10 1 3.0732 1.8331 3.5810 11 1 1.8138 0.1551 2.3651 12 1 3.8449 -0.4655 3.5356 13 7 1.6183 2.1110 -1.2382 14 6 1.5377 3.5690 -1.0497 15 6 0.1509 3.9322 -0.5197 16 6 0.0321 5.4429 -0.3342 17 6 0.8089 5.8682 0.9175 18 6 -1.4573 5.7646 -0.0792 19 7 0.4636 6.1903 -1.4970 20 6 0.4351 7.6407 -1.2658 21 6 1.6386 5.7774 -2.2354 22 6 2.9192 6.3101 -1.5816 23 6 1.5590 6.3913 -3.6510 24 6 1.7402 4.2626 -2.3965 25 1 -0.3633 -1.0235 0.0929 26 1 -0.3633 0.5921 0.8399 27 1 -0.3634 0.4313 -0.9327 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9141 0.4409 2.0117 31 1 2.2347 1.8787 -2.0026 32 1 2.3061 3.8766 -0.3450 33 1 -0.6082 3.5920 -1.2276 34 1 -0.0127 3.4342 0.4387 35 1 0.6432 6.9292 1.1048 36 1 0.4627 5.2897 1.7741 37 1 1.8728 5.6882 0.7636 38 1 -2.0457 5.4755 -0.9500 39 1 -1.8043 5.2116 0.7936 40 1 -1.5728 6.8338 0.0986 41 1 0.4334 8.1613 -2.2235 42 1 -0.4644 7.9022 -0.7085 43 1 1.3152 7.9348 -0.6939 44 1 3.7760 6.0687 -2.2107 45 1 2.8458 7.3915 -1.4668 46 1 3.0461 5.8487 -0.6021 47 1 0.6803 6.0036 -4.1663 48 1 1.4853 7.4760 -3.5730 49 1 2.4553 6.1275 -4.2123 50 1 2.7251 4.0045 -2.7926 51 1 0.9773 3.9197 -3.0992 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171623976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:25 Heat of formation + Delta-G solvation = -20.258864 kcal Electronic energy + Delta-G solvation = -25217.493731 eV Core-core repulsion = 22150.614220 eV Total energy + Delta-G solvation = -3066.879511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34436 -38.17580 -36.06346 -35.10931 -33.91218 -31.65388 -29.84320 -28.62985 -28.26463 -27.53797 -27.21438 -26.37147 -24.27500 -21.86354 -21.72556 -21.19113 -19.08357 -18.47657 -17.09637 -16.84852 -16.56574 -16.14245 -15.49704 -15.33222 -15.20047 -14.80460 -14.76035 -14.22337 -14.16285 -13.87093 -13.73306 -13.65155 -13.45913 -13.34024 -13.14466 -12.97720 -12.63110 -12.62085 -12.53122 -12.36532 -12.26784 -12.23095 -12.13391 -12.04457 -11.72571 -11.59251 -11.52882 -11.29991 -11.16927 -10.98228 -10.84919 -10.58985 -9.02259 -8.78524 -8.34993 -6.36624 1.28613 1.32700 1.42326 2.30522 2.86332 3.01489 3.42989 3.82899 3.88303 4.00759 4.10593 4.12910 4.37885 4.44560 4.50780 4.52162 4.54653 4.57050 4.59763 4.73102 4.76576 4.80115 4.81790 4.82639 4.89448 4.95733 4.97962 5.02783 5.03579 5.04119 5.08309 5.17440 5.18977 5.22823 5.28664 5.29537 5.33081 5.37321 5.46074 5.48141 5.53505 5.54829 5.64175 5.73461 6.11270 6.45170 6.47770 6.66331 6.70693 6.83721 7.31820 8.81495 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.005862 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.023698 B = 4775.413141 C = 5008.214893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.198 3.802 4 H 0.019 0.981 5 C -0.543 4.543 6 H 0.028 0.972 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.917 3.083 10 H -0.282 1.282 11 H -0.212 1.212 12 H -0.288 1.288 13 N -0.666 5.666 14 C 0.094 3.906 15 C -0.084 4.084 16 C 0.142 3.858 17 C -0.178 4.178 18 C -0.133 4.133 19 N -0.569 5.569 20 C 0.039 3.961 21 C 0.147 3.853 22 C -0.179 4.179 23 C -0.133 4.133 24 C -0.102 4.102 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.329 0.671 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 12.541 -5.173 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.088 3.912 4 H 0.037 0.963 5 C -0.582 4.582 6 H 0.046 0.954 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.742 3.258 10 H -0.208 1.208 11 H -0.135 1.135 12 H -0.214 1.214 13 N -0.294 5.294 14 C -0.016 4.016 15 C -0.123 4.123 16 C 0.052 3.948 17 C -0.237 4.237 18 C -0.190 4.190 19 N -0.293 5.293 20 C -0.108 4.108 21 C 0.057 3.943 22 C -0.238 4.238 23 C -0.190 4.190 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.102 12.262 -5.229 20.144 hybrid contribution 2.474 -0.144 1.595 2.947 sum -12.628 12.118 -3.633 17.875 Atomic orbital electron populations 1.21585 0.94854 1.00415 1.01740 1.21867 0.96143 0.97527 1.00011 1.19312 0.90477 0.91965 0.89427 0.96313 1.22046 0.92895 1.41439 1.01778 0.95362 1.25798 0.95549 0.94470 1.02073 1.70106 1.11224 1.47191 1.30021 0.86412 0.82255 0.77970 0.79212 1.20825 1.13461 1.21434 1.60956 1.54731 1.07024 1.06719 1.21265 0.96111 0.88077 0.96177 1.21493 0.96460 0.93704 1.00609 1.20446 0.95449 0.92112 0.86765 1.22690 0.99965 1.01875 0.99165 1.22239 0.93363 1.01846 1.01582 1.56615 1.38190 1.04779 1.29718 1.22314 1.00842 0.85830 1.01766 1.20347 0.86578 0.93345 0.94057 1.22670 0.99044 1.01650 1.00389 1.22222 1.01856 1.01019 0.93938 1.21714 1.01400 0.94170 0.96700 0.92949 0.94130 0.91633 0.93595 0.93833 0.92790 0.85494 0.96834 0.90906 0.93296 0.91244 0.92860 0.94820 0.91916 0.92359 0.91435 0.90465 0.90327 0.96002 0.92734 0.91099 0.94971 0.91909 0.91489 0.92414 0.92980 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.72 71.98 0.70 -3.69 16 2 C -0.12 -4.95 4.92 30.59 0.15 -4.80 16 3 C 0.20 9.10 1.37 44.17 0.06 9.17 16 4 H 0.02 0.90 6.08 -2.39 -0.01 0.89 16 5 C -0.54 -30.67 8.76 25.60 0.22 -30.45 16 6 H 0.03 1.78 7.94 -2.91 -0.02 1.76 16 7 C 0.02 1.12 5.40 84.65 0.46 1.58 16 8 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.92 43.86 25.85 68.60 1.77 45.63 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.21 -9.09 5.12 99.48 0.51 -8.58 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 N -0.67 -26.41 5.53 -473.48 -2.62 -29.02 16 14 C 0.09 3.37 2.15 44.74 0.10 3.47 16 15 C -0.08 -2.61 4.17 30.43 0.13 -2.48 16 16 C 0.14 3.65 0.68 4.43 0.00 3.65 16 17 C -0.18 -4.88 7.64 72.09 0.55 -4.33 16 18 C -0.13 -2.72 8.16 72.49 0.59 -2.12 16 19 N -0.57 -13.42 3.54 -827.12 -2.93 -16.35 16 20 C 0.04 0.73 7.55 127.69 0.96 1.69 16 21 C 0.15 3.75 0.68 4.44 0.00 3.76 16 22 C -0.18 -4.94 7.66 72.09 0.55 -4.39 16 23 C -0.13 -2.72 8.17 72.49 0.59 -2.13 16 24 C -0.10 -3.09 3.92 30.43 0.12 -2.97 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.93 4.43 -2.39 -0.01 1.92 16 30 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.33 13.54 7.99 -89.69 -0.72 12.83 16 32 H 0.01 0.60 5.80 -2.54 -0.01 0.58 16 33 H 0.07 2.19 8.07 -2.27 -0.02 2.17 16 34 H 0.05 1.64 7.46 -2.26 -0.02 1.63 16 35 H 0.07 1.60 6.96 -2.39 -0.02 1.59 16 36 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 37 H 0.03 1.10 5.09 -2.39 -0.01 1.08 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.17 6.18 -2.39 -0.01 1.15 16 41 H 0.08 1.25 6.36 -2.39 -0.02 1.23 16 42 H 0.08 1.29 5.82 -2.39 -0.01 1.27 16 43 H 0.02 0.44 5.74 -2.39 -0.01 0.43 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.68 6.22 -2.39 -0.01 1.66 16 46 H 0.03 1.07 5.03 -2.38 -0.01 1.05 16 47 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 48 H 0.07 1.18 6.37 -2.39 -0.02 1.16 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.69 8.05 -2.25 -0.02 1.67 16 51 H 0.08 2.25 8.05 -2.26 -0.02 2.23 16 Total: -1.00 -63.18 356.14 1.70 -61.48 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.02 Total: 31.57 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 5.19 Total: -34.03 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -5.25 Total: -104.64 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.77 Total: 45.63 kcal Total: -63.18 1.70 -61.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171623976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -63.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds