Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47305 * 2 1 4 4 C 1.46900 * 111.00252 * 199.75913 * 3 2 1 5 5 C 1.50692 * 109.46963 * 66.04272 * 4 3 2 6 6 H 1.07996 * 120.00758 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99811 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99955 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00292 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47124 * 90.00094 * 9 7 5 11 11 H 1.48495 * 109.47316 * 210.00264 * 9 7 5 12 12 H 1.48505 * 109.47037 * 329.99941 * 9 7 5 13 13 C 1.47227 * 110.99933 * 75.80098 * 3 2 1 14 14 C 1.52837 * 109.23271 * 74.57899 * 13 3 2 15 15 C 1.52662 * 110.39986 * 179.05971 * 14 13 3 16 16 C 1.54512 * 107.51350 * 191.49694 * 15 14 13 17 17 C 1.53341 * 109.52575 * 75.34114 * 15 14 13 18 18 N 1.44794 * 113.00663 * 310.80783 * 15 14 13 19 19 C 1.46898 * 112.17816 * 175.72071 * 18 15 14 20 20 C 1.44799 * 120.27341 * 40.48119 * 18 15 14 21 21 C 1.53328 * 111.18698 * 83.01230 * 20 18 15 22 22 C 1.54497 * 108.19661 * 200.49289 * 20 18 15 23 23 C 1.52672 * 112.94868 * 319.39888 * 20 18 15 24 24 H 1.09003 * 109.47449 * 184.56841 * 1 2 3 25 25 H 1.08995 * 109.47288 * 304.57066 * 1 2 3 26 26 H 1.09003 * 109.47192 * 64.57078 * 1 2 3 27 27 H 1.08999 * 109.47038 * 239.99483 * 2 1 3 28 28 H 1.08999 * 109.46452 * 119.99850 * 2 1 3 29 29 H 1.08997 * 109.47220 * 186.04728 * 4 3 2 30 30 H 1.09006 * 109.46232 * 306.04477 * 4 3 2 31 31 H 0.97005 * 120.00288 * 180.02562 * 8 7 5 32 32 H 1.08697 * 108.94324 * 313.85841 * 13 3 2 33 33 H 1.09231 * 109.38480 * 58.56961 * 14 13 3 34 34 H 1.09253 * 109.36557 * 299.51507 * 14 13 3 35 35 H 1.09001 * 109.47281 * 302.32078 * 16 15 14 36 36 H 1.08998 * 109.47106 * 182.32204 * 16 15 14 37 37 H 1.09001 * 109.47274 * 62.32317 * 16 15 14 38 38 H 1.08998 * 109.47478 * 176.35879 * 17 15 14 39 39 H 1.08998 * 109.46689 * 296.35821 * 17 15 14 40 40 H 1.09001 * 109.47267 * 56.35750 * 17 15 14 41 41 H 1.09002 * 109.47535 * 60.00399 * 19 18 15 42 42 H 1.09001 * 109.46997 * 180.02562 * 19 18 15 43 43 H 1.09001 * 109.47675 * 299.99865 * 19 18 15 44 44 H 1.08997 * 109.47773 * 59.99618 * 21 20 18 45 45 H 1.09005 * 109.47075 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46642 * 299.99161 * 21 20 18 47 47 H 1.09000 * 109.47433 * 59.99881 * 22 20 18 48 48 H 1.08997 * 109.47385 * 179.97438 * 22 20 18 49 49 H 1.09009 * 109.47117 * 300.00022 * 22 20 18 50 50 H 1.09238 * 109.43869 * 169.83592 * 23 20 18 51 51 H 1.09229 * 109.44341 * 289.00843 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4121 1.4511 -0.4636 5 6 3.4782 1.0474 -1.9140 6 1 2.5763 0.7698 -2.4390 7 6 4.6905 1.0323 -2.5707 8 7 5.7890 1.3697 -1.9312 9 14 4.7725 0.5325 -4.3688 10 1 4.6053 1.7345 -5.2247 11 1 6.0889 -0.0951 -4.6485 12 1 3.6885 -0.4391 -4.6625 13 6 1.8777 1.9948 1.3325 14 6 2.9494 1.4272 2.2627 15 6 2.8411 2.0598 3.6478 16 6 4.1110 1.6708 4.4373 17 6 1.6426 1.4599 4.3929 18 7 2.7604 3.5049 3.6053 19 6 2.5558 4.0883 4.9378 20 6 1.9611 4.1618 2.5922 21 6 0.4851 4.2209 3.0030 22 6 2.4566 5.6189 2.4566 23 6 2.0831 3.5052 1.2193 24 1 -0.3634 -1.0244 0.0819 25 1 -0.3633 0.5831 0.8462 26 1 -0.3634 0.4413 -0.9281 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.7840 2.4696 -0.3526 30 1 4.0253 0.7735 0.1306 31 1 6.6419 1.3595 -2.3934 32 1 0.8854 1.7744 1.7175 33 1 3.9377 1.6329 1.8453 34 1 2.8208 0.3455 2.3461 35 1 4.1922 0.5847 4.4827 36 1 4.0477 2.0729 5.4484 37 1 4.9891 2.0802 3.9378 38 1 1.6041 1.8642 5.4044 39 1 0.7231 1.7131 3.8652 40 1 1.7487 0.3760 4.4387 41 1 3.3882 3.8147 5.5861 42 1 2.5012 5.1738 4.8547 43 1 1.6256 3.7096 5.3615 44 1 0.3894 4.7765 3.9359 45 1 -0.0897 4.7192 2.2223 46 1 0.1060 3.2085 3.1425 47 1 3.5067 5.6199 2.1644 48 1 1.8680 6.1336 1.6973 49 1 2.3449 6.1311 3.4124 50 1 1.3301 3.9240 0.5478 51 1 3.0742 3.7064 0.8068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171636017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = 4.336048 kcal Electronic energy + Delta-G solvation = -25272.521526 eV Core-core repulsion = 22206.708530 eV Total energy + Delta-G solvation = -3065.812995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30728 -36.99167 -34.92408 -32.73607 -32.05634 -29.87409 -28.58747 -27.59546 -26.50518 -26.38361 -25.93344 -25.11968 -22.45021 -21.87930 -20.44640 -18.91509 -17.35057 -16.24566 -15.70963 -15.62517 -14.90411 -14.50814 -14.22825 -14.08095 -13.82052 -13.56384 -13.09523 -13.00238 -12.77717 -12.62781 -12.41221 -12.29406 -12.10251 -11.99185 -11.66144 -11.57326 -11.40905 -11.28006 -11.17317 -11.14126 -10.95245 -10.84249 -10.68734 -10.57575 -10.51242 -10.24887 -10.00720 -9.87438 -9.75704 -9.43210 -9.05784 -8.36470 -7.69692 -7.07639 -5.97129 -3.97618 3.34757 3.40815 3.44153 3.93684 4.46215 4.78421 5.01745 5.05478 5.13374 5.21840 5.32896 5.38753 5.48306 5.50072 5.59342 5.64892 5.72172 5.73418 5.78307 5.83463 5.85043 5.93596 5.95033 5.98707 6.02151 6.03362 6.07050 6.14595 6.16448 6.19862 6.31157 6.35203 6.37629 6.45010 6.49116 6.57423 6.61935 6.72658 6.80924 6.87889 6.93827 7.41719 7.46620 7.55411 7.84752 7.87785 8.19872 8.32238 8.65426 9.10549 9.65995 11.13296 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.005321 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.605305 B = 5260.970144 C = 5500.259653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.531 5.531 4 C 0.192 3.808 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.088 3.912 14 C -0.141 4.141 15 C 0.149 3.851 16 C -0.142 4.142 17 C -0.179 4.179 18 N -0.570 5.570 19 C 0.043 3.957 20 C 0.145 3.855 21 C -0.177 4.177 22 C -0.142 4.142 23 C -0.099 4.099 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.034 0.966 30 H -0.007 1.007 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 3.620 13.522 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.545 4.545 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.021 4.021 14 C -0.180 4.180 15 C 0.059 3.941 16 C -0.200 4.200 17 C -0.238 4.238 18 N -0.295 5.295 19 C -0.104 4.104 20 C 0.055 3.945 21 C -0.236 4.236 22 C -0.200 4.200 23 C -0.137 4.137 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.011 0.989 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.005 3.984 12.997 15.776 hybrid contribution -0.033 -0.962 -0.157 0.976 sum -8.038 3.022 12.840 15.447 Atomic orbital electron populations 1.21777 0.96918 0.99720 1.01519 1.21968 0.93985 0.90765 1.00756 1.62427 1.25356 1.16506 1.21111 1.19746 0.81809 0.96930 0.94796 1.21206 0.93130 1.44470 0.95712 0.92066 1.24966 0.95707 0.95725 0.98136 1.69961 0.98363 1.48927 1.36436 0.86563 0.77148 0.78683 0.85385 1.20713 1.21426 1.19959 1.21523 0.96789 0.94320 0.89453 1.22320 1.02510 0.99308 0.93886 1.20341 0.93779 0.84526 0.95407 1.22310 0.97981 1.00373 0.99296 1.22684 0.99665 1.01054 1.00383 1.56374 1.61160 1.06375 1.05558 1.22186 0.99458 0.99340 0.89440 1.20435 0.89380 0.93516 0.91133 1.22696 0.98136 1.01640 1.01154 1.22327 1.01993 0.94901 1.00749 1.21627 1.03589 0.94593 0.93856 0.93730 0.93836 0.92455 0.89821 0.96356 0.94853 0.98918 0.93052 0.91650 0.90009 0.92109 0.92797 0.93238 0.91927 0.92855 0.92623 0.92539 0.92037 0.91684 0.95793 0.93137 0.92279 0.92699 0.91920 0.92521 0.93171 0.91175 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.08 37.16 0.37 -1.91 16 2 C 0.05 1.04 5.43 -3.82 -0.02 1.02 16 3 N -0.53 -11.22 4.35 -228.15 -0.99 -12.21 16 4 C 0.19 4.89 3.49 -4.98 -0.02 4.88 16 5 C -0.51 -14.13 8.23 -34.44 -0.28 -14.42 16 6 H 0.06 1.71 7.31 -52.49 -0.38 1.32 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.09 1.57 1.97 -67.69 -0.13 1.44 16 14 C -0.14 -2.45 3.19 -26.99 -0.09 -2.53 16 15 C 0.15 2.13 0.69 -131.94 -0.09 2.04 16 16 C -0.14 -1.90 8.11 37.95 0.31 -1.59 16 17 C -0.18 -2.26 7.58 37.33 0.28 -1.97 16 18 N -0.57 -7.90 3.54 -212.78 -0.75 -8.65 16 19 C 0.04 0.49 7.54 60.06 0.45 0.94 16 20 C 0.14 2.02 0.68 -131.94 -0.09 1.93 16 21 C -0.18 -2.19 7.64 37.33 0.29 -1.90 16 22 C -0.14 -1.82 8.16 37.94 0.31 -1.51 16 23 C -0.10 -1.69 3.98 -26.98 -0.11 -1.79 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.66 6.65 -51.93 -0.35 0.32 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.82 6.58 -51.93 -0.34 1.48 16 28 H 0.02 0.35 6.45 -51.93 -0.33 0.01 16 29 H 0.03 0.92 6.20 -51.93 -0.32 0.60 16 30 H -0.01 -0.19 6.80 -51.93 -0.35 -0.54 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.07 1.11 4.77 -52.10 -0.25 0.87 16 33 H 0.08 1.69 6.34 -51.80 -0.33 1.36 16 34 H 0.06 1.07 6.57 -51.79 -0.34 0.73 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.58 6.48 -51.93 -0.34 0.24 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.61 6.42 -51.93 -0.33 0.27 16 39 H 0.05 0.73 4.98 -51.93 -0.26 0.47 16 40 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.06 0.67 6.41 -51.93 -0.33 0.33 16 42 H 0.06 0.69 5.82 -51.93 -0.30 0.38 16 43 H 0.02 0.26 5.82 -51.93 -0.30 -0.04 16 44 H 0.05 0.56 6.96 -51.93 -0.36 0.20 16 45 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 46 H 0.05 0.71 4.99 -51.93 -0.26 0.45 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.56 6.18 -51.92 -0.32 0.24 16 50 H 0.07 1.20 8.02 -51.79 -0.42 0.79 16 51 H 0.08 1.53 6.33 -51.80 -0.33 1.20 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -28.55 353.66 -8.67 -37.22 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -9.06 Total: 1.36 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 1.09 Total: -13.90 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.01 Total: -46.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.55 -8.67 -37.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171636017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.556 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds