Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 113.99963 * 2 1 4 4 C 1.53002 * 109.46990 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46858 * 180.02562 * 4 3 2 6 6 N 1.46905 * 109.46858 * 179.97438 * 5 4 3 7 7 C 1.46846 * 111.00006 * 294.21031 * 6 5 4 8 8 C 1.53037 * 109.52167 * 174.16433 * 7 6 5 9 9 C 1.53118 * 109.28400 * 59.17631 * 8 7 6 10 10 N 1.46887 * 109.52639 * 182.44145 * 9 8 7 11 11 C 1.47485 * 111.00164 * 284.53340 * 10 9 8 12 12 C 1.53517 * 87.93318 * 221.29432 * 11 10 9 13 13 C 1.50701 * 114.17052 * 139.66810 * 12 11 10 14 14 H 1.08009 * 119.99647 * 266.16119 * 13 12 11 15 15 C 1.37867 * 120.00135 * 86.16035 * 13 12 11 16 16 N 1.31513 * 120.00024 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47172 * 90.00069 * 17 15 13 19 19 H 1.48503 * 109.47270 * 209.99783 * 17 15 13 20 20 H 1.48500 * 109.47070 * 329.99976 * 17 15 13 21 21 C 1.47479 * 111.00440 * 188.55911 * 10 9 8 22 22 C 1.53121 * 109.15870 * 302.35108 * 9 8 7 23 23 C 1.46845 * 110.99766 * 169.99703 * 6 5 4 24 24 H 1.09003 * 109.47321 * 299.99898 * 1 2 3 25 25 H 1.09003 * 109.47196 * 59.99889 * 1 2 3 26 26 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47032 * 59.99872 * 3 2 1 28 28 H 1.08994 * 109.47114 * 300.00005 * 3 2 1 29 29 H 1.08992 * 109.47308 * 60.00093 * 4 3 2 30 30 H 1.09006 * 109.46841 * 299.99593 * 4 3 2 31 31 H 1.08994 * 109.47058 * 299.99832 * 5 4 3 32 32 H 1.09002 * 109.47220 * 59.99780 * 5 4 3 33 33 H 1.09007 * 109.45933 * 294.17345 * 7 6 5 34 34 H 1.08996 * 109.46703 * 54.14535 * 7 6 5 35 35 H 1.09002 * 109.50334 * 299.23607 * 8 7 6 36 36 H 1.09000 * 109.53446 * 179.13646 * 8 7 6 37 37 H 1.09008 * 109.52035 * 62.24722 * 9 8 7 38 38 H 1.09000 * 113.47130 * 336.05924 * 11 10 9 39 39 H 1.08997 * 113.47702 * 106.52908 * 11 10 9 40 40 H 1.08995 * 114.34107 * 272.36332 * 12 11 10 41 41 H 0.96999 * 120.00410 * 180.02562 * 16 15 13 42 42 H 1.08998 * 113.48103 * 253.47145 * 21 10 9 43 43 H 1.09007 * 113.47476 * 23.93833 * 21 10 9 44 44 H 1.08999 * 109.50126 * 297.71081 * 22 9 8 45 45 H 1.09001 * 109.50218 * 177.59701 * 22 9 8 46 46 H 1.08992 * 109.46900 * 305.85901 * 23 6 5 47 47 H 1.09008 * 109.46304 * 65.82854 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4664 0.0000 7 6 6.1023 1.8638 1.2501 8 6 7.6110 1.6253 1.1563 9 6 8.3193 2.9596 0.9060 10 7 9.7623 2.7290 0.7569 11 6 10.3937 2.4681 2.0639 12 6 11.5639 3.3536 1.6130 13 6 12.1031 4.2593 2.6900 14 1 11.7362 5.2713 2.7782 15 6 13.0646 3.7961 3.5627 16 7 13.5109 2.5636 3.4556 17 14 13.7335 4.9189 4.8973 18 1 12.9076 4.7774 6.1232 19 1 15.1382 4.5448 5.2009 20 1 13.6866 6.3273 4.4287 21 6 10.5003 4.0052 0.7179 22 6 7.7665 3.5892 -0.3756 23 6 6.2533 3.7708 -0.2375 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8566 0.6439 -0.8908 30 1 3.8573 0.6436 0.8892 31 1 3.8357 3.1238 -0.8895 32 1 3.8363 3.1228 0.8904 33 1 5.8920 2.5365 2.0817 34 1 5.5939 0.9138 1.4141 35 1 7.8210 0.9419 0.3335 36 1 7.9703 1.1922 2.0898 37 1 8.1415 3.6298 1.7471 38 1 9.8365 2.8801 2.9052 39 1 10.6709 1.4243 2.2116 40 1 12.3436 2.8236 1.0660 41 1 14.1872 2.2376 4.0698 42 1 10.8679 4.2643 -0.2750 43 1 9.9715 4.8275 1.2001 44 1 7.9789 2.9367 -1.2225 45 1 8.2365 4.5595 -0.5364 46 1 5.8546 4.2058 -1.1539 47 1 6.0423 4.4345 0.6011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172249156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = -17.718184 kcal Electronic energy + Delta-G solvation = -22456.870934 eV Core-core repulsion = 19254.268501 eV Total energy + Delta-G solvation = -3202.602433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75269 -38.49474 -37.82917 -34.34669 -32.57056 -31.29392 -30.71964 -27.95898 -26.90474 -25.19887 -24.94592 -23.78588 -22.86012 -21.80572 -20.92026 -19.45940 -18.58702 -16.93162 -16.60858 -16.52145 -15.88069 -15.21582 -15.12854 -14.79421 -14.51791 -14.31274 -14.16580 -13.80476 -13.62461 -13.21032 -12.55568 -12.44819 -12.31253 -12.12612 -11.89781 -11.60237 -11.36432 -11.32891 -11.10372 -11.05934 -10.98120 -10.93099 -10.85507 -10.52254 -10.32618 -10.00674 -9.91710 -9.55742 -9.10740 -8.87723 -8.42330 -8.36139 -7.92519 -6.04042 -4.08402 3.28663 3.29855 3.35850 3.38758 3.94561 4.40455 4.62642 4.78104 4.79467 4.87829 4.97080 4.97711 5.04837 5.07217 5.12730 5.20715 5.26384 5.29454 5.38370 5.42479 5.45802 5.52400 5.69091 5.81181 5.86054 5.86352 5.95164 6.01170 6.09831 6.14760 6.26634 6.36034 6.45386 6.57457 6.67397 6.72190 6.81319 6.83534 7.07002 7.07059 7.17969 7.25192 7.74792 7.94199 8.15855 8.39766 8.94668 9.56321 11.05533 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036807 B = 0.002645 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.547962 B =10582.469002 C =10815.038043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.117 4.117 5 C 0.059 3.941 6 N -0.536 5.536 7 C 0.056 3.944 8 C -0.104 4.104 9 C 0.051 3.949 10 N -0.478 5.478 11 C 0.007 3.993 12 C 0.040 3.960 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.003 4.003 22 C -0.106 4.106 23 C 0.060 3.940 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.728 -1.059 -6.608 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.155 4.155 5 C -0.069 4.069 6 N -0.260 5.260 7 C -0.073 4.073 8 C -0.142 4.142 9 C -0.058 4.058 10 N -0.201 5.201 11 C -0.121 4.121 12 C 0.021 3.979 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.068 4.068 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.321 -2.150 -7.466 23.635 hybrid contribution -0.384 1.938 2.213 2.967 sum -22.705 -0.212 -5.253 23.306 Atomic orbital electron populations 1.22736 0.81080 1.02772 0.99902 1.87887 1.19652 1.28125 1.95405 1.22499 0.94334 0.84573 1.00030 1.21518 0.92049 0.97622 1.04290 1.21936 0.88049 0.96140 1.00745 1.61892 1.04634 1.23898 1.35615 1.22169 0.96545 0.99116 0.89428 1.21512 0.92382 0.97794 1.02526 1.22178 0.91809 0.95725 0.96116 1.68922 1.00941 1.22307 1.27900 1.23974 0.97812 1.01147 0.89217 1.20103 0.91365 0.93107 0.93296 1.21038 1.22031 0.98431 1.13868 0.92554 1.25018 0.95978 0.95048 0.97620 1.69967 1.29613 1.15389 1.37364 0.86629 0.78283 0.81119 0.82171 1.20705 1.21134 1.19857 1.23944 0.97508 0.91751 1.00000 1.21556 0.92907 1.01036 0.98871 1.22075 0.95493 0.89095 1.00130 0.94142 0.94111 0.89610 0.93497 0.93286 0.90067 0.90900 0.90746 0.94975 0.95219 0.90495 0.90490 0.91577 0.94558 0.93196 0.91896 0.91822 0.92887 0.92191 0.93113 0.90483 0.91677 0.90901 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.94 10.70 -35.23 -0.38 -4.31 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 C -0.12 -1.11 5.51 -26.73 -0.15 -1.25 16 5 C 0.06 0.57 4.96 -3.82 -0.02 0.55 16 6 N -0.54 -6.48 4.66 -234.67 -1.09 -7.57 16 7 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 8 C -0.10 -1.60 5.47 -26.65 -0.15 -1.74 16 9 C 0.05 0.87 1.60 -67.60 -0.11 0.76 16 10 N -0.48 -9.73 6.13 -236.42 -1.45 -11.18 16 11 C 0.01 0.17 6.69 -7.54 -0.05 0.12 16 12 C 0.04 1.02 3.77 -91.24 -0.34 0.68 16 13 C -0.52 -14.12 8.82 -34.44 -0.30 -14.42 16 14 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -25.70 13.26 55.43 0.74 -24.97 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.00 -0.07 6.37 -7.54 -0.05 -0.12 16 22 C -0.11 -1.54 5.38 -26.65 -0.14 -1.69 16 23 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 31 H 0.07 0.64 7.99 -51.93 -0.41 0.22 16 32 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.08 0.90 6.21 -51.93 -0.32 0.58 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 37 H 0.04 0.66 7.57 -51.92 -0.39 0.27 16 38 H 0.05 1.17 7.64 -51.93 -0.40 0.77 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.07 7.75 -51.92 -0.40 0.67 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 0.95 7.56 -51.93 -0.39 0.56 16 46 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 47 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -29.10 364.34 -10.77 -39.87 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.94 Total: -1.55 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.11 Total: -11.89 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -1.81 Total: -43.72 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.38 Total: -4.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.10 -10.77 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172249156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.149 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds