Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00250 * 2 1 3 5 5 C 1.52998 * 109.46801 * 175.00055 * 4 2 1 6 6 C 1.50708 * 109.46599 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00274 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99727 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46957 * 60.00145 * 10 8 6 12 12 H 1.48499 * 109.47240 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47317 * 299.99780 * 10 8 6 14 14 N 1.46901 * 109.47257 * 119.99768 * 2 1 3 15 15 C 1.46896 * 110.99881 * 274.99834 * 14 2 1 16 16 C 1.53006 * 109.46790 * 179.97438 * 15 14 2 17 17 C 1.53001 * 109.47124 * 180.02562 * 16 15 14 18 18 N 1.46894 * 109.47391 * 180.02562 * 17 16 15 19 19 C 1.46847 * 111.00060 * 66.27693 * 18 17 16 20 20 C 1.53032 * 109.52589 * 185.84135 * 19 18 17 21 21 C 1.53126 * 109.27918 * 300.82298 * 20 19 18 22 22 C 1.53117 * 109.15867 * 57.65476 * 21 20 19 23 23 C 1.46842 * 111.00248 * 190.49341 * 18 17 16 24 24 H 1.09004 * 109.46231 * 294.17435 * 23 18 17 25 25 C 1.52997 * 109.46562 * 54.14460 * 23 18 17 26 26 H 1.08998 * 109.47022 * 299.99822 * 1 2 3 27 27 H 1.08995 * 109.47510 * 59.99850 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47292 * 54.99340 * 4 2 1 30 30 H 1.09008 * 109.46530 * 294.99553 * 4 2 1 31 31 H 1.08999 * 109.47078 * 299.98827 * 5 4 2 32 32 H 1.08996 * 109.47573 * 60.00083 * 5 4 2 33 33 H 0.97004 * 119.99529 * 180.02562 * 9 8 6 34 34 H 1.00895 * 110.99669 * 151.04623 * 14 2 1 35 35 H 1.08995 * 109.47548 * 300.00304 * 15 14 2 36 36 H 1.09002 * 109.47060 * 60.00326 * 15 14 2 37 37 H 1.09000 * 109.47304 * 300.00002 * 16 15 14 38 38 H 1.09002 * 109.47005 * 60.00351 * 16 15 14 39 39 H 1.08995 * 109.47250 * 300.00385 * 17 16 15 40 40 H 1.09002 * 109.47023 * 60.00202 * 17 16 15 41 41 H 1.09000 * 109.46752 * 305.86392 * 19 18 17 42 42 H 1.09007 * 109.45808 * 65.83949 * 19 18 17 43 43 H 1.08998 * 109.50656 * 60.76337 * 20 19 18 44 44 H 1.09001 * 109.50238 * 180.84894 * 20 19 18 45 45 H 1.09002 * 109.52047 * 177.55832 * 21 20 19 46 46 H 1.09003 * 109.51900 * 297.75149 * 21 20 19 47 47 H 1.08997 * 109.50463 * 62.28574 * 22 21 20 48 48 H 1.09003 * 109.50428 * 182.36765 * 22 21 20 49 49 H 1.08996 * 109.47195 * 52.49760 * 25 23 18 50 50 H 1.09002 * 109.47297 * 172.50028 * 25 23 18 51 51 H 1.09006 * 109.46900 * 292.50248 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3242 -2.5440 7 1 3.3688 -1.8052 -3.2126 8 6 5.4184 -1.3604 -2.8157 9 7 6.2688 -0.7742 -2.0016 10 14 6.0411 -2.2422 -4.3401 11 1 5.4484 -1.6176 -5.5500 12 1 7.5211 -2.1374 -4.4028 13 1 5.6490 -3.6732 -4.2792 14 7 2.0197 -0.6924 1.1995 15 6 2.0826 0.2227 2.3468 16 6 2.5952 -0.5331 3.5744 17 6 2.6601 0.4199 4.7697 18 7 3.1528 -0.3055 5.9482 19 6 4.5487 -0.7225 5.7638 20 6 4.9813 -1.5969 6.9429 21 6 4.8341 -0.8013 8.2430 22 6 3.3819 -0.3378 8.3868 23 6 2.9956 0.5000 7.1658 24 1 3.6415 1.3762 7.1075 25 6 1.5387 0.9488 7.2957 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -0.2618 -2.1370 30 1 1.7516 -1.7715 -1.2055 31 1 3.8531 0.4370 -1.3575 32 1 3.9995 -1.0728 -0.4261 33 1 7.2195 -0.7994 -2.1930 34 1 2.9173 -1.1204 1.0287 35 1 2.7589 1.0463 2.1181 36 1 1.0872 0.6164 2.5525 37 1 1.9185 -1.3564 3.8030 38 1 3.5905 -0.9271 3.3691 39 1 3.3365 1.2435 4.5414 40 1 1.6645 0.8135 4.9749 41 1 4.6388 -1.2908 4.8380 42 1 5.1873 0.1593 5.7123 43 1 4.3520 -2.4858 6.9871 44 1 6.0220 -1.8938 6.8133 45 1 5.0999 -1.4345 9.0895 46 1 5.4925 0.0669 8.2153 47 1 2.7274 -1.2069 8.4536 48 1 3.2799 0.2648 9.2894 49 1 0.8831 0.0813 7.2196 50 1 1.3919 1.4315 8.2619 51 1 1.3030 1.6532 6.4979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -35.112380 kcal Electronic energy + Delta-G solvation = -22698.498204 eV Core-core repulsion = 19630.974596 eV Total energy + Delta-G solvation = -3067.523608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.54994 -37.32297 -34.84316 -33.30081 -32.79980 -31.88816 -29.64232 -28.65828 -27.21513 -25.37227 -24.73202 -22.98995 -21.56503 -21.23169 -20.80376 -19.79898 -19.36339 -16.42120 -16.17859 -15.74582 -15.45160 -14.87482 -14.62494 -14.52088 -14.38886 -14.28060 -13.72644 -13.38274 -13.12636 -12.58620 -12.51715 -12.35776 -12.18604 -12.09777 -12.02171 -11.77274 -11.66290 -11.30210 -11.23216 -11.17021 -11.00544 -10.92583 -10.85173 -10.66479 -10.48276 -10.38967 -10.23321 -10.07880 -9.72855 -9.25924 -9.02233 -8.38577 -8.34921 -7.91750 -6.00164 -4.02152 3.33764 3.37851 3.40713 3.69653 4.46287 4.53915 4.56977 4.68688 4.70794 4.91853 5.07408 5.15968 5.18321 5.32082 5.33500 5.35723 5.41262 5.49639 5.50827 5.54755 5.60941 5.65959 5.71360 5.73717 5.75033 5.81497 5.85913 5.92307 5.94664 5.97724 5.98551 6.07823 6.19701 6.21943 6.33220 6.39906 6.44311 6.54997 6.60395 6.94495 7.03556 7.06545 7.10997 7.57574 7.63342 7.81931 7.95064 8.01375 8.43213 9.04373 9.61885 11.11014 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003054 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.334192 B = 9166.640537 C =10503.567889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.687 5.687 15 C 0.062 3.938 16 C -0.113 4.113 17 C 0.053 3.947 18 N -0.532 5.532 19 C 0.051 3.949 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.036 0.964 25 C -0.149 4.149 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.351 0.649 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 3.054 20.592 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.321 5.321 15 C -0.068 4.068 16 C -0.151 4.151 17 C -0.075 4.075 18 N -0.257 5.257 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.028 4.028 24 H 0.054 0.946 25 C -0.206 4.206 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.173 0.827 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.717 2.421 20.838 22.352 hybrid contribution 1.814 0.902 -1.194 2.352 sum -5.903 3.324 19.643 20.779 Atomic orbital electron populations 1.21784 0.95836 1.01662 1.00061 1.21591 0.94463 0.96012 0.90670 0.94635 1.21830 0.99627 0.99461 0.94341 1.19116 0.88831 0.96765 0.96878 1.21212 0.91942 1.34227 1.08364 0.92719 1.25027 0.97081 0.95628 0.96722 1.69957 1.02388 1.44121 1.37112 0.86655 0.77550 0.80290 0.83498 1.20280 1.21334 1.20199 1.60582 1.34632 1.32531 1.04381 1.21877 0.99771 0.94130 0.91067 1.21554 1.02050 0.98794 0.92704 1.22153 1.00249 0.95135 0.89924 1.61949 1.20027 1.41555 1.02161 1.22160 0.87858 0.98364 0.99317 1.21584 1.01024 0.98873 0.93994 1.21593 0.96670 0.99823 0.97889 1.21623 0.96668 1.00103 0.96442 1.21591 0.96615 0.94043 0.90534 0.94568 1.21928 0.95766 1.01545 1.01375 0.93853 0.93132 0.92397 0.92808 0.92461 0.97056 0.96670 0.93011 0.82737 0.95795 0.91765 0.90435 0.91940 0.95189 0.90294 0.89937 0.95143 0.91045 0.91603 0.91933 0.92468 0.91051 0.91862 0.91518 0.92350 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.42 37.16 0.35 -1.69 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 4 C -0.11 -2.40 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.41 16 6 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 N -0.69 -11.77 6.31 -106.72 -0.67 -12.44 16 15 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 16 C -0.11 -1.47 5.42 -26.73 -0.14 -1.62 16 17 C 0.05 0.61 4.69 -3.83 -0.02 0.59 16 18 N -0.53 -5.87 4.49 -226.69 -1.02 -6.88 16 19 C 0.05 0.56 5.29 -3.84 -0.02 0.54 16 20 C -0.12 -1.10 6.09 -26.65 -0.16 -1.27 16 21 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 22 C -0.11 -0.92 5.37 -26.65 -0.14 -1.07 16 23 C 0.08 0.77 2.44 -67.72 -0.17 0.60 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 C -0.15 -1.24 8.53 37.16 0.32 -0.92 16 26 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.35 6.69 6.47 -39.29 -0.25 6.44 16 35 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 36 H 0.06 0.87 7.44 -51.93 -0.39 0.49 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 39 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.08 0.84 5.80 -51.93 -0.30 0.54 16 41 H 0.08 0.98 6.23 -51.93 -0.32 0.66 16 42 H 0.03 0.35 8.14 -51.92 -0.42 -0.08 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 51 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -29.20 383.54 -11.43 -40.62 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -10.21 Total: 1.87 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.02 Total: -19.54 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.95 Total: -45.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.20 -11.43 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.508 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds