Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00250 * 2 1 3 5 5 C 1.52998 * 109.46801 * 175.00055 * 4 2 1 6 6 C 1.50708 * 109.46599 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00274 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99727 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46957 * 60.00145 * 10 8 6 12 12 H 1.48499 * 109.47240 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47317 * 299.99780 * 10 8 6 14 14 N 1.46901 * 109.47257 * 119.99768 * 2 1 3 15 15 C 1.46896 * 110.99881 * 274.99834 * 14 2 1 16 16 C 1.53006 * 109.46790 * 179.97438 * 15 14 2 17 17 C 1.53001 * 109.47124 * 180.02562 * 16 15 14 18 18 N 1.46894 * 109.47391 * 180.02562 * 17 16 15 19 19 C 1.46847 * 111.00060 * 66.27693 * 18 17 16 20 20 C 1.53032 * 109.52589 * 185.84135 * 19 18 17 21 21 C 1.53126 * 109.27918 * 300.82298 * 20 19 18 22 22 C 1.53117 * 109.15867 * 57.65476 * 21 20 19 23 23 C 1.46842 * 111.00248 * 190.49341 * 18 17 16 24 24 H 1.09004 * 109.46231 * 294.17435 * 23 18 17 25 25 C 1.52997 * 109.46562 * 54.14460 * 23 18 17 26 26 H 1.08998 * 109.47022 * 299.99822 * 1 2 3 27 27 H 1.08995 * 109.47510 * 59.99850 * 1 2 3 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47292 * 54.99340 * 4 2 1 30 30 H 1.09008 * 109.46530 * 294.99553 * 4 2 1 31 31 H 1.08999 * 109.47078 * 299.98827 * 5 4 2 32 32 H 1.08996 * 109.47573 * 60.00083 * 5 4 2 33 33 H 0.97004 * 119.99529 * 180.02562 * 9 8 6 34 34 H 1.00895 * 110.99669 * 151.04623 * 14 2 1 35 35 H 1.08995 * 109.47548 * 300.00304 * 15 14 2 36 36 H 1.09002 * 109.47060 * 60.00326 * 15 14 2 37 37 H 1.09000 * 109.47304 * 300.00002 * 16 15 14 38 38 H 1.09002 * 109.47005 * 60.00351 * 16 15 14 39 39 H 1.08995 * 109.47250 * 300.00385 * 17 16 15 40 40 H 1.09002 * 109.47023 * 60.00202 * 17 16 15 41 41 H 1.09000 * 109.46752 * 305.86392 * 19 18 17 42 42 H 1.09007 * 109.45808 * 65.83949 * 19 18 17 43 43 H 1.08998 * 109.50656 * 60.76337 * 20 19 18 44 44 H 1.09001 * 109.50238 * 180.84894 * 20 19 18 45 45 H 1.09002 * 109.52047 * 177.55832 * 21 20 19 46 46 H 1.09003 * 109.51900 * 297.75149 * 21 20 19 47 47 H 1.08997 * 109.50463 * 62.28574 * 22 21 20 48 48 H 1.09003 * 109.50428 * 182.36765 * 22 21 20 49 49 H 1.08996 * 109.47195 * 52.49760 * 25 23 18 50 50 H 1.09002 * 109.47297 * 172.50028 * 25 23 18 51 51 H 1.09006 * 109.46900 * 292.50248 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3242 -2.5440 7 1 3.3688 -1.8052 -3.2126 8 6 5.4184 -1.3604 -2.8157 9 7 6.2688 -0.7742 -2.0016 10 14 6.0411 -2.2422 -4.3401 11 1 5.4484 -1.6176 -5.5500 12 1 7.5211 -2.1374 -4.4028 13 1 5.6490 -3.6732 -4.2792 14 7 2.0197 -0.6924 1.1995 15 6 2.0826 0.2227 2.3468 16 6 2.5952 -0.5331 3.5744 17 6 2.6601 0.4199 4.7697 18 7 3.1528 -0.3055 5.9482 19 6 4.5487 -0.7225 5.7638 20 6 4.9813 -1.5969 6.9429 21 6 4.8341 -0.8013 8.2430 22 6 3.3819 -0.3378 8.3868 23 6 2.9956 0.5000 7.1658 24 1 3.6415 1.3762 7.1075 25 6 1.5387 0.9488 7.2957 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -0.2618 -2.1370 30 1 1.7516 -1.7715 -1.2055 31 1 3.8531 0.4370 -1.3575 32 1 3.9995 -1.0728 -0.4261 33 1 7.2195 -0.7994 -2.1930 34 1 2.9173 -1.1204 1.0287 35 1 2.7589 1.0463 2.1181 36 1 1.0872 0.6164 2.5525 37 1 1.9185 -1.3564 3.8030 38 1 3.5905 -0.9271 3.3691 39 1 3.3365 1.2435 4.5414 40 1 1.6645 0.8135 4.9749 41 1 4.6388 -1.2908 4.8380 42 1 5.1873 0.1593 5.7123 43 1 4.3520 -2.4858 6.9871 44 1 6.0220 -1.8938 6.8133 45 1 5.0999 -1.4345 9.0895 46 1 5.4925 0.0669 8.2153 47 1 2.7274 -1.2069 8.4536 48 1 3.2799 0.2648 9.2894 49 1 0.8831 0.0813 7.2196 50 1 1.3919 1.4315 8.2619 51 1 1.3030 1.6532 6.4979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -51.807804 kcal Electronic energy + Delta-G solvation = -22699.222172 eV Core-core repulsion = 19630.974596 eV Total energy + Delta-G solvation = -3068.247576 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37919 -38.74738 -36.02662 -35.04140 -33.78723 -33.13056 -31.32271 -29.87456 -27.96402 -27.09605 -25.90289 -24.06788 -23.14519 -22.25341 -21.87938 -20.90836 -20.57077 -18.53206 -17.10551 -16.95125 -16.58859 -16.54564 -16.06483 -15.52087 -15.35866 -15.18831 -14.76174 -14.60280 -14.34243 -14.21370 -14.11212 -13.36971 -13.27848 -13.15334 -13.06446 -12.85726 -12.83171 -12.81324 -12.73241 -12.46586 -12.28866 -12.22578 -11.92833 -11.86855 -11.72494 -11.60015 -11.50169 -11.31567 -11.11280 -11.03738 -10.94318 -10.55476 -9.33252 -9.26887 -8.21281 -6.32064 1.38722 1.41687 1.49503 2.39941 2.80839 3.11531 3.34050 3.83349 3.84856 3.93241 4.02904 4.10054 4.17946 4.22318 4.33498 4.39790 4.44655 4.45622 4.50031 4.53279 4.59694 4.67993 4.70305 4.74803 4.77813 4.88062 4.91463 4.97279 4.99835 5.02520 5.06432 5.07362 5.10242 5.20343 5.23157 5.24911 5.25570 5.33142 5.35824 5.44878 5.50618 5.53065 5.69578 5.82801 6.13070 6.22621 6.23540 6.27380 6.43860 6.84157 7.37010 8.89882 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003054 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.334192 B = 9166.640537 C =10503.567889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.026 0.974 4 C -0.102 4.102 5 C 0.028 3.972 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.689 5.689 15 C 0.065 3.935 16 C -0.101 4.101 17 C 0.060 3.940 18 N -0.537 5.537 19 C 0.049 3.951 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.108 4.108 23 C 0.076 3.924 24 H 0.030 0.970 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H -0.018 1.018 32 H -0.002 1.002 33 H 0.263 0.737 34 H 0.336 0.664 35 H 0.012 0.988 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 2.868 21.197 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.024 4.024 3 H 0.044 0.956 4 C -0.140 4.140 5 C -0.009 4.009 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.321 5.321 15 C -0.065 4.065 16 C -0.139 4.139 17 C -0.068 4.068 18 N -0.262 5.262 19 C -0.079 4.079 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.032 4.032 24 H 0.048 0.952 25 C -0.202 4.202 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.000 1.000 32 H 0.016 0.984 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.030 0.970 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.886 2.241 21.452 23.327 hybrid contribution 2.189 0.982 -1.358 2.757 sum -6.697 3.223 20.093 21.424 Atomic orbital electron populations 1.21702 0.93004 1.02177 1.01568 1.21554 0.96564 0.94834 0.89474 0.95629 1.21655 0.96124 0.99881 0.96356 1.18987 0.92172 0.94314 0.95414 1.21669 0.92580 1.34597 1.09345 0.92324 1.25967 0.97341 0.96339 1.00099 1.70092 1.02736 1.45319 1.39053 0.85522 0.76990 0.79283 0.79402 1.19224 1.20839 1.19170 1.60698 1.33551 1.33038 1.04843 1.21929 1.00529 0.93451 0.90576 1.21422 1.00845 0.98818 0.92864 1.22066 1.00841 0.94346 0.89566 1.61980 1.19782 1.41915 1.02566 1.22154 0.88054 0.98180 0.99498 1.21570 1.01174 0.98497 0.94011 1.21593 0.96817 0.99845 0.97536 1.21623 0.96406 1.00016 0.96485 1.21715 0.97446 0.93842 0.90176 0.95173 1.21903 0.94603 1.01387 1.02329 0.92111 0.91912 0.92332 0.92405 0.92613 0.99971 0.98416 0.92847 0.84461 0.96966 0.89964 0.90761 0.93576 0.95983 0.88949 0.91544 0.95876 0.91487 0.91074 0.90534 0.92506 0.91400 0.90111 0.91952 0.90666 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.42 71.98 0.68 -2.88 16 2 C 0.09 3.01 2.65 44.92 0.12 3.13 16 3 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16 4 C -0.10 -4.31 4.74 30.59 0.15 -4.17 16 5 C 0.03 1.51 4.80 29.85 0.14 1.65 16 6 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.02 5.46 84.65 0.46 0.48 16 9 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 10 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 N -0.69 -23.79 6.31 -491.56 -3.10 -26.89 16 15 C 0.06 1.88 5.48 86.31 0.47 2.35 16 16 C -0.10 -2.68 5.42 30.60 0.17 -2.51 16 17 C 0.06 1.36 4.69 86.30 0.40 1.76 16 18 N -0.54 -11.70 4.49 -871.13 -3.91 -15.61 16 19 C 0.05 1.11 5.29 86.32 0.46 1.57 16 20 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 21 C -0.12 -1.84 6.00 30.68 0.18 -1.66 16 22 C -0.11 -1.61 5.37 30.65 0.16 -1.45 16 23 C 0.08 1.36 2.44 44.94 0.11 1.47 16 24 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 25 C -0.14 -2.16 8.53 71.98 0.61 -1.54 16 26 H 0.06 1.50 7.45 -2.39 -0.02 1.48 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H 0.00 -0.13 6.43 -2.39 -0.02 -0.15 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.34 13.34 6.47 -89.70 -0.58 12.75 16 35 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 36 H 0.08 2.10 7.44 -2.39 -0.02 2.08 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.36 6.44 -2.39 -0.02 1.35 16 39 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 40 H 0.09 1.85 5.80 -2.39 -0.01 1.83 16 41 H 0.07 1.68 6.23 -2.39 -0.01 1.67 16 42 H 0.02 0.54 8.14 -2.38 -0.02 0.53 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 51 H 0.05 0.83 6.56 -2.38 -0.02 0.82 16 Total: -1.00 -62.82 383.54 0.11 -62.71 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.27 Total: 24.75 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.54 Total: -34.93 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.73 Total: -99.35 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.82 0.11 -62.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.907 kcal (2) G-P(sol) polarization free energy of solvation -62.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds