Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00096 * 2 1 3 5 5 C 1.52994 * 109.47427 * 185.00018 * 4 2 1 6 6 C 1.50707 * 109.47273 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99998 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99733 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99930 * 179.72175 * 8 6 5 11 11 H 1.48504 * 109.47490 * 270.27481 * 10 8 6 12 12 H 1.48498 * 109.47314 * 30.27574 * 10 8 6 13 13 H 1.48501 * 109.47124 * 150.27419 * 10 8 6 14 14 N 1.46904 * 109.46946 * 240.00094 * 2 1 3 15 15 C 1.46897 * 110.99824 * 85.00548 * 14 2 1 16 16 C 1.53005 * 109.47061 * 180.02562 * 15 14 2 17 17 C 1.52995 * 109.47248 * 179.97438 * 16 15 14 18 18 N 1.46895 * 109.46972 * 179.97438 * 17 16 15 19 19 C 1.46846 * 111.00157 * 66.28210 * 18 17 16 20 20 C 1.53032 * 109.52799 * 185.83635 * 19 18 17 21 21 C 1.53123 * 109.28005 * 300.82462 * 20 19 18 22 22 C 1.53120 * 109.16297 * 57.64998 * 21 20 19 23 23 C 1.46849 * 110.99999 * 190.49212 * 18 17 16 24 24 H 1.09003 * 109.46306 * 294.17603 * 23 18 17 25 25 C 1.52995 * 109.46482 * 54.14331 * 23 18 17 26 26 H 1.09002 * 109.46749 * 59.99777 * 1 2 3 27 27 H 1.08995 * 109.47544 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46879 * 300.00066 * 1 2 3 29 29 H 1.08999 * 109.46938 * 64.99424 * 4 2 1 30 30 H 1.09005 * 109.47373 * 305.00187 * 4 2 1 31 31 H 1.08999 * 109.47547 * 59.99779 * 5 4 2 32 32 H 1.09010 * 109.47242 * 299.99726 * 5 4 2 33 33 H 0.96993 * 120.00517 * 359.72811 * 9 8 6 34 34 H 1.00903 * 110.99627 * 208.95570 * 14 2 1 35 35 H 1.09001 * 109.46878 * 299.99644 * 15 14 2 36 36 H 1.08999 * 109.47573 * 59.99616 * 15 14 2 37 37 H 1.09001 * 109.46842 * 299.99492 * 16 15 14 38 38 H 1.08999 * 109.47383 * 59.99325 * 16 15 14 39 39 H 1.09001 * 109.47125 * 299.99735 * 17 16 15 40 40 H 1.09005 * 109.47399 * 59.99949 * 17 16 15 41 41 H 1.08995 * 109.46483 * 305.85402 * 19 18 17 42 42 H 1.09005 * 109.46288 * 65.83629 * 19 18 17 43 43 H 1.09000 * 109.50592 * 60.76145 * 20 19 18 44 44 H 1.08999 * 109.50728 * 180.84328 * 20 19 18 45 45 H 1.09003 * 109.52401 * 177.55920 * 21 20 19 46 46 H 1.09001 * 109.51682 * 297.74326 * 21 20 19 47 47 H 1.09000 * 109.50177 * 62.28761 * 22 21 20 48 48 H 1.08998 * 109.50345 * 182.36740 * 22 21 20 49 49 H 1.09006 * 109.46934 * 52.50177 * 25 23 18 50 50 H 1.08998 * 109.47605 * 172.49521 * 25 23 18 51 51 H 1.08993 * 109.47477 * 292.50262 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5439 7 1 3.3687 -1.8047 3.2130 8 6 5.4185 -1.3615 2.8151 9 7 6.2691 -0.7769 1.9999 10 14 6.0405 -2.2360 4.3439 11 1 6.0859 -1.2785 5.4781 12 1 5.1266 -3.3575 4.6791 13 1 7.4037 -2.7675 4.0900 14 7 2.0196 -0.6925 -1.1995 15 6 2.0825 0.2226 -2.3468 16 6 2.5950 -0.5331 -3.5745 17 6 2.6599 0.4198 -4.7697 18 7 3.1526 -0.3056 -5.9482 19 6 2.1908 -1.3296 -6.3758 20 6 2.7973 -2.1592 -7.5098 21 6 3.1438 -1.2365 -8.6817 22 6 4.1089 -0.1506 -8.1981 23 6 3.4644 0.6207 -7.0441 24 1 2.5461 1.0941 -7.3918 25 6 4.4333 1.6941 -6.5443 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7715 1.2056 30 1 1.6054 -0.2618 2.1370 31 1 3.8532 0.4369 1.3573 32 1 3.9995 -1.0729 0.4259 33 1 5.9461 -0.3230 1.2059 34 1 2.9173 -1.1205 -1.0287 35 1 1.0871 0.6164 -2.5525 36 1 2.7589 1.0462 -2.1181 37 1 3.5903 -0.9272 -3.3692 38 1 1.9183 -1.3565 -3.8031 39 1 1.6644 0.8136 -4.9749 40 1 3.3365 1.2435 -4.5414 41 1 1.9561 -1.9815 -5.5344 42 1 1.2786 -0.8471 -6.7269 43 1 3.7021 -2.6531 -7.1558 44 1 2.0775 -2.9094 -7.8372 45 1 3.6159 -1.8166 -9.4748 46 1 2.2336 -0.7723 -9.0612 47 1 5.0344 -0.6129 -7.8547 48 1 4.3265 0.5342 -9.0177 49 1 5.2935 1.2168 -6.0748 50 1 4.7687 2.3009 -7.3853 51 1 3.9282 2.3291 -5.8166 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -56.345173 kcal Electronic energy + Delta-G solvation = -22716.963913 eV Core-core repulsion = 19648.519582 eV Total energy + Delta-G solvation = -3068.444331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39935 -38.87286 -36.20053 -35.24867 -33.80884 -33.14372 -31.16597 -29.91078 -28.00251 -26.77220 -25.88820 -24.12669 -23.44581 -22.29004 -21.93952 -21.03541 -20.58211 -18.94172 -17.28386 -16.99823 -16.38652 -16.29882 -15.93499 -15.67573 -15.31405 -15.19461 -15.05199 -14.58456 -14.45785 -14.44696 -13.90314 -13.65030 -13.62746 -13.18217 -13.04451 -12.87799 -12.76585 -12.74451 -12.70351 -12.41468 -12.28240 -12.01134 -11.96143 -11.86852 -11.77541 -11.65216 -11.55253 -11.47880 -11.12249 -11.05919 -10.63170 -10.55201 -9.42014 -9.25609 -8.70021 -6.40354 1.51099 1.60482 1.78462 2.55573 2.78278 3.14263 3.25885 3.82019 3.85601 3.87808 3.95877 4.05580 4.09050 4.16410 4.28843 4.32743 4.35909 4.42129 4.45142 4.47801 4.54590 4.63030 4.64946 4.68812 4.71645 4.82711 4.86368 4.87789 4.92234 4.94881 4.95777 5.03971 5.05404 5.07086 5.18931 5.20952 5.23062 5.28912 5.31636 5.33963 5.42801 5.47420 5.49297 5.99405 6.11179 6.16685 6.20540 6.22465 6.33882 6.57185 7.41208 8.70441 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002928 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.043832 B = 9561.005025 C =10323.895780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.027 0.973 4 C -0.096 4.096 5 C 0.012 3.988 6 C -0.619 4.619 7 H 0.049 0.951 8 C -0.040 4.040 9 N -0.937 5.937 10 Si 1.120 2.880 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.282 1.282 14 N -0.689 5.689 15 C 0.064 3.936 16 C -0.102 4.102 17 C 0.061 3.939 18 N -0.546 5.546 19 C 0.052 3.948 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.080 3.920 24 H 0.039 0.961 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.057 0.943 31 H -0.021 1.021 32 H -0.005 1.005 33 H 0.254 0.746 34 H 0.335 0.665 35 H 0.080 0.920 36 H 0.017 0.983 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 2.577 -21.406 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.045 0.955 4 C -0.134 4.134 5 C -0.025 4.025 6 C -0.657 4.657 7 H 0.067 0.933 8 C -0.237 4.237 9 N -0.574 5.574 10 Si 0.941 3.059 11 H -0.198 1.198 12 H -0.194 1.194 13 H -0.207 1.207 14 N -0.322 5.322 15 C -0.065 4.065 16 C -0.140 4.140 17 C -0.067 4.067 18 N -0.272 5.272 19 C -0.076 4.076 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.028 4.028 24 H 0.057 0.943 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H -0.002 1.002 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.690 1.722 -20.615 22.438 hybrid contribution -1.051 1.466 -0.687 1.931 sum -9.742 3.188 -21.303 23.640 Atomic orbital electron populations 1.21696 0.92884 1.02213 1.01650 1.21562 0.96711 0.94824 0.89332 0.95470 1.21541 0.95377 0.99927 0.96514 1.19165 0.93817 0.93946 0.95581 1.22524 0.95062 1.37743 1.10343 0.93261 1.27459 0.94265 0.96786 1.05230 1.70896 1.37728 1.34868 1.13923 0.82901 0.75651 0.75794 0.71552 1.19769 1.19387 1.20747 1.60694 1.33493 1.33132 1.04846 1.21940 1.00503 0.93562 0.90530 1.21423 1.00949 0.98569 0.93050 1.22024 0.98640 0.96204 0.89853 1.61931 1.44402 1.15015 1.05825 1.22158 0.92870 0.94202 0.98351 1.21586 1.01174 0.97822 0.94823 1.21581 0.99432 0.97053 0.97582 1.21637 0.98760 0.97800 0.96604 1.21663 0.97495 0.92401 0.91226 0.94332 1.21924 0.99230 0.97735 1.01650 0.92015 0.92330 0.91872 0.92695 0.92450 1.00227 0.98720 0.93648 0.84561 0.90201 0.96512 0.93185 0.91181 0.94384 0.90487 0.91028 0.94901 0.92212 0.90422 0.90774 0.91897 0.92119 0.90196 0.92847 0.90617 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.41 71.98 0.68 -2.86 16 2 C 0.09 2.99 2.65 44.91 0.12 3.10 16 3 H 0.03 1.00 7.80 -2.39 -0.02 0.98 16 4 C -0.10 -4.06 4.74 30.59 0.15 -3.92 16 5 C 0.01 0.64 4.11 29.85 0.12 0.76 16 6 C -0.62 -36.28 9.11 25.60 0.23 -36.05 16 7 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 8 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 9 N -0.94 -59.23 13.65 21.45 0.29 -58.94 16 10 Si 1.12 51.37 29.90 68.60 2.05 53.42 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 N -0.69 -23.45 6.31 -491.56 -3.10 -26.55 16 15 C 0.06 1.82 5.48 86.31 0.47 2.30 16 16 C -0.10 -2.63 5.41 30.59 0.17 -2.46 16 17 C 0.06 1.35 4.69 86.30 0.40 1.75 16 18 N -0.55 -11.67 4.49 -871.13 -3.91 -15.58 16 19 C 0.05 1.00 5.29 86.32 0.46 1.46 16 20 C -0.12 -1.91 6.09 30.65 0.19 -1.72 16 21 C -0.12 -1.67 6.00 30.68 0.18 -1.49 16 22 C -0.11 -1.71 5.37 30.65 0.16 -1.54 16 23 C 0.08 1.44 2.44 44.94 0.11 1.55 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 C -0.15 -2.57 8.53 71.98 0.61 -1.96 16 26 H 0.06 1.51 7.45 -2.39 -0.02 1.49 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 31 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 32 H -0.01 -0.29 6.29 -2.38 -0.01 -0.31 16 33 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 34 H 0.34 13.11 6.47 -89.69 -0.58 12.53 16 35 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 36 H 0.02 0.51 8.05 -2.39 -0.02 0.49 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.80 6.44 -2.39 -0.02 1.78 16 39 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 40 H 0.08 1.73 5.80 -2.38 -0.01 1.72 16 41 H 0.07 1.49 6.23 -2.39 -0.01 1.48 16 42 H 0.03 0.60 8.14 -2.38 -0.02 0.59 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 49 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 51 H 0.05 0.95 6.56 -2.39 -0.02 0.94 16 Total: -1.00 -64.95 382.23 0.22 -64.73 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.37 Total: 25.92 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 4.52 Total: -43.00 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -6.72 Total: -101.07 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -64.95 0.22 -64.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds