Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47301 * 2 1 4 4 C 1.52997 * 109.47333 * 239.99458 * 2 1 3 5 5 C 1.53009 * 109.47078 * 175.00349 * 4 2 1 6 6 C 1.50696 * 109.46909 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00618 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99650 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00304 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47080 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47250 * 119.99308 * 10 8 6 13 13 H 1.48495 * 109.46965 * 239.99741 * 10 8 6 14 14 N 1.46900 * 109.46848 * 119.99489 * 2 1 3 15 15 C 1.46905 * 111.00030 * 275.00030 * 14 2 1 16 16 C 1.53008 * 109.46981 * 179.97438 * 15 14 2 17 17 C 1.52998 * 109.46548 * 179.97438 * 16 15 14 18 18 N 1.46908 * 109.46613 * 179.97438 * 17 16 15 19 19 C 1.46838 * 111.00309 * 289.70423 * 18 17 16 20 20 C 1.53038 * 109.52542 * 174.16328 * 19 18 17 21 21 C 1.53118 * 109.28147 * 59.17430 * 20 19 18 22 22 C 1.53123 * 109.15865 * 302.35332 * 21 20 19 23 23 C 1.46846 * 110.99612 * 165.48777 * 18 17 16 24 24 H 1.09008 * 109.45869 * 65.84404 * 23 18 17 25 25 C 1.52998 * 109.46859 * 305.85863 * 23 18 17 26 26 H 1.08996 * 109.47102 * 300.00897 * 1 2 3 27 27 H 1.09003 * 109.46833 * 60.00239 * 1 2 3 28 28 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47308 * 294.99795 * 4 2 1 30 30 H 1.08994 * 109.47169 * 55.00347 * 4 2 1 31 31 H 1.09001 * 109.47122 * 299.99872 * 5 4 2 32 32 H 1.09003 * 109.46956 * 59.99724 * 5 4 2 33 33 H 0.97007 * 119.99720 * 180.02562 * 9 8 6 34 34 H 1.00897 * 111.00002 * 151.04910 * 14 2 1 35 35 H 1.08999 * 109.47178 * 299.99725 * 15 14 2 36 36 H 1.08998 * 109.46974 * 60.00379 * 15 14 2 37 37 H 1.08999 * 109.47197 * 300.00029 * 16 15 14 38 38 H 1.08998 * 109.46700 * 60.00526 * 16 15 14 39 39 H 1.08999 * 109.47553 * 300.00005 * 17 16 15 40 40 H 1.08998 * 109.47032 * 60.00923 * 17 16 15 41 41 H 1.09007 * 109.46561 * 294.17547 * 19 18 17 42 42 H 1.09001 * 109.46558 * 54.14461 * 19 18 17 43 43 H 1.09000 * 109.49987 * 299.23565 * 20 19 18 44 44 H 1.09001 * 109.50693 * 179.12244 * 20 19 18 45 45 H 1.08995 * 109.52560 * 182.44746 * 21 20 19 46 46 H 1.08999 * 109.51687 * 62.25148 * 21 20 19 47 47 H 1.08999 * 109.49988 * 297.70530 * 22 21 20 48 48 H 1.09000 * 109.53041 * 177.61382 * 22 21 20 49 49 H 1.09003 * 109.46782 * 67.29688 * 25 23 18 50 50 H 1.08998 * 109.47356 * 187.29395 * 25 23 18 51 51 H 1.09002 * 109.46862 * 307.29832 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5442 7 1 3.3688 -1.8039 -3.2133 8 6 5.4186 -1.3604 -2.8154 9 7 6.2691 -0.7757 -2.0004 10 14 6.0413 -2.2411 -4.3406 11 1 4.8914 -2.8127 -5.0864 12 1 6.7646 -1.2771 -5.2082 13 1 6.9630 -3.3340 -3.9393 14 7 2.0196 -0.6924 1.1995 15 6 2.0823 0.2228 2.3469 16 6 2.5949 -0.5329 3.5747 17 6 2.6608 0.4205 4.7694 18 7 3.1523 -0.3053 5.9484 19 6 2.1494 -1.2618 6.4335 20 6 2.7470 -2.0989 7.5667 21 6 3.1866 -1.1714 8.7029 22 6 4.1944 -0.1544 8.1600 23 6 3.5548 0.6263 7.0097 24 1 2.6778 1.1598 7.3765 25 6 4.5654 1.6301 6.4509 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7517 -1.7716 -1.2054 30 1 1.6055 -0.2619 -2.1369 31 1 3.8533 0.4368 -1.3572 32 1 3.9995 -1.0729 -0.4256 33 1 7.2198 -0.8015 -2.1914 34 1 2.9172 -1.1204 1.0289 35 1 2.7588 1.0463 2.1182 36 1 1.0869 0.6165 2.5525 37 1 1.9181 -1.3563 3.8032 38 1 3.5902 -0.9269 3.3693 39 1 3.3378 1.2435 4.5407 40 1 1.6656 0.8148 4.9749 41 1 1.2789 -0.7194 6.8029 42 1 1.8484 -1.9181 5.6169 43 1 3.6092 -2.6523 7.1945 44 1 1.9973 -2.7981 7.9371 45 1 3.6524 -1.7594 9.4936 46 1 2.3182 -0.6466 9.1012 47 1 5.0794 -0.6773 7.7973 48 1 4.4795 0.5357 8.9541 49 1 4.0728 2.2742 5.7225 50 1 4.9614 2.2380 7.2643 51 1 5.3817 1.0930 5.9679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = -34.796579 kcal Electronic energy + Delta-G solvation = -22671.619697 eV Core-core repulsion = 19604.109784 eV Total energy + Delta-G solvation = -3067.509913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.55601 -37.31885 -34.84335 -33.29677 -32.78833 -31.90308 -29.64492 -28.66224 -27.20813 -25.37585 -24.71908 -22.97574 -21.57678 -21.22972 -20.82352 -19.80940 -19.36076 -16.46181 -16.15298 -15.78676 -15.27618 -14.97612 -14.64657 -14.50569 -14.46575 -14.28519 -13.77276 -13.18335 -13.14246 -12.65538 -12.50239 -12.34675 -12.18244 -12.12512 -12.01812 -11.86703 -11.53256 -11.29842 -11.24494 -11.13847 -11.04043 -10.95050 -10.85521 -10.71373 -10.44756 -10.33610 -10.23804 -10.09610 -9.72333 -9.24492 -8.99355 -8.39048 -8.34206 -7.91463 -5.98841 -4.00727 3.32254 3.39742 3.44157 3.68506 4.47553 4.53477 4.56298 4.68153 4.69060 4.90940 5.09550 5.13646 5.16630 5.31109 5.32862 5.36503 5.39365 5.49098 5.50010 5.56702 5.58524 5.65386 5.69892 5.72828 5.73711 5.80767 5.87727 5.92393 5.95431 5.98645 5.99375 6.07919 6.19373 6.22176 6.33422 6.41137 6.42511 6.54307 6.61201 6.94801 7.03598 7.06272 7.11970 7.58160 7.65200 7.83147 7.96255 8.02716 8.44662 9.06236 9.63388 11.12381 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002931 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.753982 B = 9551.519420 C =10355.041856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.112 4.112 17 C 0.053 3.947 18 N -0.532 5.532 19 C 0.054 3.946 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.112 4.112 23 C 0.082 3.918 24 H 0.035 0.965 25 C -0.151 4.151 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.352 0.648 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 2.876 20.880 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.322 5.322 15 C -0.069 4.069 16 C -0.150 4.150 17 C -0.075 4.075 18 N -0.257 5.257 19 C -0.074 4.074 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.026 4.026 24 H 0.053 0.947 25 C -0.208 4.208 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.984 2.396 20.929 22.528 hybrid contribution 0.501 0.603 -0.810 1.127 sum -7.483 2.999 20.118 21.673 Atomic orbital electron populations 1.21784 0.95909 1.01614 1.00032 1.21587 0.94396 0.96056 0.90698 0.94594 1.21829 0.99670 0.99430 0.94316 1.19129 0.88794 0.96817 0.96933 1.21279 0.91942 1.34129 1.08273 0.92644 1.25031 0.97107 0.95651 0.96713 1.69973 1.02294 1.44214 1.36988 0.86549 0.78851 0.79479 0.83215 1.19749 1.21083 1.21006 1.60587 1.34735 1.32520 1.04378 1.21879 0.99625 0.94252 0.91114 1.21529 1.02363 0.98288 0.92806 1.22175 0.98276 0.96806 0.90273 1.61916 1.40345 1.17546 1.05915 1.22127 0.92434 0.95065 0.97776 1.21591 1.01221 0.97648 0.95079 1.21584 0.98923 0.97603 0.97795 1.21634 0.98964 0.97822 0.96540 1.21584 0.96942 0.92451 0.91656 0.94659 1.21951 0.99548 0.98318 1.00990 0.93925 0.93121 0.92434 0.92489 0.92823 0.97027 0.96595 0.93110 0.82612 0.95553 0.92024 0.91416 0.91023 0.90204 0.95188 0.95353 0.90150 0.90944 0.91739 0.91924 0.92550 0.90932 0.91816 0.92426 0.92299 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.41 37.16 0.35 -1.69 16 2 C 0.08 1.46 2.65 -67.72 -0.18 1.28 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.40 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.69 -11.79 6.31 -106.72 -0.67 -12.46 16 15 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 16 C -0.11 -1.46 5.50 -26.73 -0.15 -1.61 16 17 C 0.05 0.60 4.75 -3.82 -0.02 0.58 16 18 N -0.53 -5.86 4.46 -226.69 -1.01 -6.88 16 19 C 0.05 0.54 5.30 -3.84 -0.02 0.52 16 20 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 21 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 22 C -0.11 -0.95 5.37 -26.65 -0.14 -1.10 16 23 C 0.08 0.79 2.44 -67.73 -0.17 0.63 16 24 H 0.04 0.35 8.14 -51.92 -0.42 -0.08 16 25 C -0.15 -1.39 8.56 37.16 0.32 -1.07 16 26 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.43 6.43 -51.93 -0.33 0.09 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.35 6.74 6.47 -39.29 -0.25 6.48 16 35 H 0.03 0.40 8.06 -51.93 -0.42 -0.01 16 36 H 0.06 0.84 7.44 -51.93 -0.39 0.46 16 37 H 0.07 0.89 6.59 -51.93 -0.34 0.55 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.91 5.61 -51.93 -0.29 0.62 16 40 H 0.03 0.33 8.07 -51.93 -0.42 -0.09 16 41 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.08 0.85 6.42 -51.93 -0.33 0.52 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.53 6.46 -51.93 -0.34 0.20 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -29.35 383.71 -11.42 -40.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -10.21 Total: 1.81 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.02 Total: -19.61 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.95 Total: -45.59 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.35 -11.42 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.970 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds