Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47670 * 2 1 4 4 C 1.53003 * 109.47158 * 119.99561 * 2 1 3 5 5 C 1.52992 * 109.47494 * 184.99816 * 4 2 1 6 6 C 1.50700 * 109.47269 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00192 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99876 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99710 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99627 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47160 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46885 * 120.00021 * 10 8 6 13 13 H 1.48501 * 109.46887 * 239.99665 * 10 8 6 14 14 N 1.46897 * 109.47529 * 239.99430 * 2 1 3 15 15 C 1.46895 * 111.00033 * 84.99949 * 14 2 1 16 16 C 1.53002 * 109.47490 * 180.02562 * 15 14 2 17 17 C 1.52999 * 109.47138 * 179.97438 * 16 15 14 18 18 N 1.46904 * 109.46901 * 179.97438 * 17 16 15 19 19 C 1.46842 * 110.99288 * 289.66137 * 18 17 16 20 20 C 1.53038 * 109.51451 * 174.15317 * 19 18 17 21 21 C 1.53112 * 109.28169 * 59.18269 * 20 19 18 22 22 C 1.53118 * 109.15898 * 302.34687 * 21 20 19 23 23 C 1.46845 * 111.00015 * 165.45756 * 18 17 16 24 24 H 1.08997 * 109.46228 * 65.83312 * 23 18 17 25 25 C 1.53002 * 109.46092 * 305.85987 * 23 18 17 26 26 H 1.09002 * 109.46873 * 60.00416 * 1 2 3 27 27 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47258 * 300.00340 * 1 2 3 29 29 H 1.08998 * 109.47072 * 304.99968 * 4 2 1 30 30 H 1.09004 * 109.46776 * 64.99593 * 4 2 1 31 31 H 1.08997 * 109.47350 * 300.00622 * 5 4 2 32 32 H 1.09004 * 109.47291 * 60.00093 * 5 4 2 33 33 H 0.97010 * 119.99255 * 179.97438 * 9 8 6 34 34 H 1.00900 * 110.99458 * 321.05233 * 14 2 1 35 35 H 1.09003 * 109.46931 * 60.00133 * 15 14 2 36 36 H 1.09009 * 109.47444 * 300.00511 * 15 14 2 37 37 H 1.09003 * 109.46437 * 60.00140 * 16 15 14 38 38 H 1.08999 * 109.46895 * 300.00535 * 16 15 14 39 39 H 1.09006 * 109.46850 * 60.00471 * 17 16 15 40 40 H 1.08998 * 109.47375 * 300.00512 * 17 16 15 41 41 H 1.09002 * 109.46215 * 54.13563 * 19 18 17 42 42 H 1.09000 * 109.46266 * 294.16097 * 19 18 17 43 43 H 1.09001 * 109.50075 * 299.23780 * 20 19 18 44 44 H 1.09005 * 109.50338 * 179.12668 * 20 19 18 45 45 H 1.09000 * 109.52641 * 182.44301 * 21 20 19 46 46 H 1.09001 * 109.52470 * 62.25034 * 21 20 19 47 47 H 1.08998 * 109.50337 * 297.71437 * 22 21 20 48 48 H 1.09000 * 109.53403 * 177.61293 * 22 21 20 49 49 H 1.09006 * 109.47181 * 307.27026 * 25 23 18 50 50 H 1.09002 * 109.47663 * 67.27302 * 25 23 18 51 51 H 1.09001 * 109.47177 * 187.27556 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 6 4.0670 -1.3231 2.5447 7 1 3.3685 -1.8035 3.2138 8 6 5.4183 -1.3592 2.8166 9 7 6.2687 -0.7737 2.0020 10 14 6.0408 -2.2396 4.3419 11 1 4.8909 -2.8121 5.0870 12 1 6.9635 -3.3320 3.9410 13 1 6.7631 -1.2752 5.2099 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2224 -2.3468 16 6 2.5952 -0.5335 -3.5744 17 6 2.6600 0.4194 -4.7697 18 7 3.1528 -0.3062 -5.9481 19 6 4.5758 -0.6389 -5.8040 20 6 5.0169 -1.5166 -6.9774 21 6 4.7801 -0.7634 -8.2892 22 6 3.2996 -0.3862 -8.3918 23 6 2.9083 0.4589 -7.1774 24 1 3.5048 1.3710 -7.1622 25 6 1.4245 0.8216 -7.2655 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -0.2616 2.1370 30 1 1.7515 -1.7714 1.2057 31 1 3.9994 -1.0728 0.4261 32 1 3.8532 0.4370 1.3574 33 1 7.2194 -0.7988 2.1935 34 1 1.4495 -1.4980 -1.4098 35 1 2.7589 1.0460 -2.1182 36 1 1.0871 0.6161 -2.5526 37 1 1.9184 -1.3568 -3.8028 38 1 3.5905 -0.9275 -3.3689 39 1 3.3365 1.2431 -4.5414 40 1 1.6645 0.8131 -4.9749 41 1 4.7298 -1.1778 -4.8691 42 1 5.1642 0.2786 -5.7954 43 1 4.4384 -2.4404 -6.9785 44 1 6.0770 -1.7507 -6.8784 45 1 5.0524 -1.4015 -9.1300 46 1 5.3884 0.1409 -8.3050 47 1 2.6940 -1.2921 -8.4152 48 1 3.1320 0.1873 -9.3035 49 1 0.8226 -0.0800 -7.1505 50 1 1.1754 1.5281 -6.4737 51 1 1.2182 1.2748 -8.2351 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -32.692000 kcal Electronic energy + Delta-G solvation = -22674.305406 eV Core-core repulsion = 19606.886754 eV Total energy + Delta-G solvation = -3067.418652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.54577 -37.33696 -34.81541 -33.27495 -32.77896 -31.86872 -29.70973 -28.43263 -27.21157 -25.25037 -24.74498 -22.98575 -21.54920 -21.20415 -20.90569 -19.79530 -19.56164 -16.27721 -16.07281 -15.69391 -15.26793 -14.91180 -14.69795 -14.50409 -14.27677 -14.22092 -13.84591 -13.19612 -13.12270 -12.69182 -12.55288 -12.36620 -12.25958 -12.18120 -12.02591 -11.81159 -11.63047 -11.28930 -11.20462 -11.14555 -11.01730 -10.92371 -10.77934 -10.71316 -10.39438 -10.34399 -10.22303 -10.04598 -9.58611 -9.16336 -8.84646 -8.38974 -8.20037 -7.79326 -5.85324 -3.86068 3.38293 3.45405 3.49760 3.69145 4.51625 4.56445 4.56913 4.66540 4.70755 4.91727 5.09126 5.14276 5.17488 5.29540 5.35196 5.35867 5.44587 5.48603 5.50170 5.51909 5.53656 5.62114 5.65292 5.70942 5.71321 5.77149 5.78142 5.84863 5.91536 5.94777 5.97571 6.07625 6.13400 6.21609 6.29677 6.36242 6.42021 6.50329 6.73994 6.94606 7.03462 7.07113 7.36688 7.59713 7.88625 7.90575 8.12447 8.27960 8.61775 9.23320 9.76288 11.25772 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.003045 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.101995 B = 9192.868250 C =10537.989733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.516 4.516 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.671 5.671 15 C 0.063 3.937 16 C -0.111 4.111 17 C 0.052 3.948 18 N -0.532 5.532 19 C 0.051 3.949 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.110 4.110 23 C 0.080 3.920 24 H 0.037 0.963 25 C -0.149 4.149 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.006 0.994 33 H 0.257 0.743 34 H 0.334 0.666 35 H 0.068 0.932 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 2.888 -21.391 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.555 4.555 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.301 5.301 15 C -0.067 4.067 16 C -0.150 4.150 17 C -0.076 4.076 18 N -0.258 5.258 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.028 4.028 24 H 0.055 0.945 25 C -0.206 4.206 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.167 2.572 -21.286 22.944 hybrid contribution -0.021 0.461 0.740 0.872 sum -8.188 3.033 -20.547 22.325 Atomic orbital electron populations 1.22534 0.98727 1.01483 1.01144 1.21723 0.90827 0.98294 0.91718 0.91191 1.21628 1.00583 0.98368 0.93064 1.18993 0.88349 0.96417 0.97003 1.21402 0.91845 1.33845 1.08398 0.93078 1.25008 0.97161 0.95837 0.96519 1.69998 1.02063 1.44518 1.36907 0.86629 0.78810 0.79531 0.83558 1.19890 1.21133 1.21209 1.60484 1.57575 1.09029 1.03012 1.21886 0.98386 0.95908 0.90514 1.21527 1.02907 0.98200 0.92338 1.22172 1.00187 0.95250 0.90007 1.61949 1.17368 1.44723 1.01712 1.22158 0.87415 0.98551 0.99504 1.21584 1.00869 0.99113 0.93910 1.21590 0.96411 1.00122 0.97852 1.21620 0.96433 1.00293 0.96478 1.21589 0.96316 0.94463 0.90437 0.94534 1.21937 0.95452 1.01825 1.01402 0.93800 0.92813 0.92359 0.93629 0.93506 0.94914 0.97585 0.93362 0.84833 0.91362 0.96267 0.91610 0.90793 0.94875 0.90529 0.89841 0.95081 0.91082 0.91570 0.91948 0.92451 0.91093 0.91883 0.91598 0.92499 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.16 37.16 0.34 -2.16 16 2 C 0.08 1.45 2.59 -67.71 -0.18 1.28 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 6 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -27.78 13.29 55.43 0.74 -27.05 16 10 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 N -0.67 -11.09 5.70 -106.73 -0.61 -11.70 16 15 C 0.06 0.88 5.48 -3.83 -0.02 0.86 16 16 C -0.11 -1.42 5.50 -26.73 -0.15 -1.57 16 17 C 0.05 0.58 4.75 -3.82 -0.02 0.56 16 18 N -0.53 -5.79 4.46 -226.69 -1.01 -6.80 16 19 C 0.05 0.57 5.30 -3.84 -0.02 0.55 16 20 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 21 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 22 C -0.11 -0.91 5.37 -26.65 -0.14 -1.06 16 23 C 0.08 0.75 2.44 -67.72 -0.17 0.59 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 C -0.15 -1.21 8.56 37.16 0.32 -0.89 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.33 5.05 8.47 -39.29 -0.33 4.71 16 35 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 36 H 0.02 0.24 7.44 -51.92 -0.39 -0.14 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.08 6.59 -51.93 -0.34 0.74 16 39 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 40 H 0.08 0.79 5.61 -51.93 -0.29 0.50 16 41 H 0.08 1.01 6.42 -51.93 -0.33 0.68 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.46 6.46 -51.93 -0.34 0.13 16 51 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -30.87 386.25 -11.47 -42.34 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -10.36 Total: -0.12 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.03 Total: -19.80 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.88 Total: -45.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.87 -11.47 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.647 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds