Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47266 * 239.99789 * 2 1 3 5 5 C 1.52992 * 109.47204 * 175.00050 * 4 2 1 6 6 C 1.50701 * 109.47422 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00397 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99846 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00102 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47135 * 90.00342 * 10 8 6 12 12 H 1.48502 * 109.47082 * 210.00369 * 10 8 6 13 13 H 1.48501 * 109.47303 * 330.00088 * 10 8 6 14 14 N 1.46901 * 109.46747 * 119.99919 * 2 1 3 15 15 C 1.46897 * 111.00170 * 275.00013 * 14 2 1 16 16 C 1.52993 * 109.47173 * 180.02562 * 15 14 2 17 17 C 1.53000 * 109.47683 * 179.97438 * 16 15 14 18 18 N 1.46895 * 109.47597 * 179.97438 * 17 16 15 19 19 C 1.46847 * 110.99982 * 189.99795 * 18 17 16 20 20 C 1.53034 * 109.51345 * 185.84805 * 19 18 17 21 21 C 1.53123 * 109.27992 * 300.80438 * 20 19 18 22 22 C 1.52996 * 109.57495 * 177.60435 * 21 20 19 23 23 C 1.53127 * 109.15019 * 57.67185 * 21 20 19 24 24 C 1.46843 * 110.99970 * 314.21160 * 18 17 16 25 25 H 1.08999 * 109.47128 * 300.00493 * 1 2 3 26 26 H 1.09011 * 109.46932 * 59.99478 * 1 2 3 27 27 H 1.08997 * 109.47729 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47189 * 295.00910 * 4 2 1 29 29 H 1.09007 * 109.46865 * 55.00594 * 4 2 1 30 30 H 1.09007 * 109.47354 * 300.00549 * 5 4 2 31 31 H 1.09004 * 109.47112 * 60.00097 * 5 4 2 32 32 H 0.97001 * 119.99904 * 179.97438 * 9 8 6 33 33 H 1.00899 * 110.99333 * 151.04440 * 14 2 1 34 34 H 1.08997 * 109.47477 * 59.99989 * 15 14 2 35 35 H 1.09003 * 109.47147 * 299.99835 * 15 14 2 36 36 H 1.09007 * 109.47569 * 59.99764 * 16 15 14 37 37 H 1.09001 * 109.47525 * 300.00066 * 16 15 14 38 38 H 1.08997 * 109.46731 * 59.99390 * 17 16 15 39 39 H 1.09001 * 109.46741 * 300.00604 * 17 16 15 40 40 H 1.09002 * 109.46481 * 305.85957 * 19 18 17 41 41 H 1.08994 * 109.46283 * 65.83811 * 19 18 17 42 42 H 1.08997 * 109.50952 * 60.75924 * 20 19 18 43 43 H 1.08998 * 109.50459 * 180.87821 * 20 19 18 44 44 H 1.09003 * 109.53012 * 297.76758 * 21 20 19 45 45 H 1.09000 * 109.46968 * 300.29446 * 22 21 20 46 46 H 1.09000 * 109.47430 * 60.29800 * 22 21 20 47 47 H 1.09002 * 109.46935 * 180.29882 * 22 21 20 48 48 H 1.08997 * 109.49981 * 182.39822 * 23 21 20 49 49 H 1.08998 * 109.53089 * 62.30397 * 23 21 20 50 50 H 1.08993 * 109.46313 * 294.17341 * 24 18 17 51 51 H 1.09000 * 109.46480 * 54.15451 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3232 -2.5444 7 1 3.3686 -1.8030 -3.2139 8 6 5.4183 -1.3593 -2.8162 9 7 6.2689 -0.7746 -2.0012 10 14 6.0409 -2.2387 -4.3422 11 1 6.0904 -1.2836 -5.4783 12 1 7.4024 -2.7729 -4.0848 13 1 5.1249 -3.3586 -4.6765 14 7 2.0196 -0.6925 1.1995 15 6 2.0824 0.2225 2.3469 16 6 2.5960 -0.5329 3.5742 17 6 2.6620 0.4202 4.7692 18 7 3.1546 -0.3053 5.9477 19 6 3.0092 0.5053 7.1635 20 6 3.6627 -0.2195 8.3423 21 6 2.9918 -1.5827 8.5323 22 6 3.6795 -2.3381 9.6713 23 6 3.1152 -2.3884 7.2360 24 6 2.4778 -1.6007 6.0890 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 3.8532 0.4370 -1.3572 31 1 3.9994 -1.0728 -0.4258 32 1 7.2196 -0.8003 -2.1922 33 1 2.9172 -1.1205 1.0287 34 1 1.0870 0.6163 2.5526 35 1 2.7588 1.0461 2.1183 36 1 3.5915 -0.9264 3.3683 37 1 1.9200 -1.3568 3.8030 38 1 1.6668 0.8140 4.9752 39 1 3.3383 1.2438 4.5401 40 1 3.4941 1.4705 7.0166 41 1 1.9507 0.6588 7.3732 42 1 4.7242 -0.3612 8.1393 43 1 3.5411 0.3751 9.2477 44 1 1.9385 -1.4400 8.7737 45 1 4.7332 -2.4784 9.4300 46 1 3.5912 -1.7640 10.5936 47 1 3.2041 -3.3103 9.8015 48 1 2.6024 -3.3433 7.3509 49 1 4.1680 -2.5648 7.0154 50 1 1.4218 -1.4372 6.3036 51 1 2.5768 -2.1654 5.1619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -36.634609 kcal Electronic energy + Delta-G solvation = -22441.714633 eV Core-core repulsion = 19374.125016 eV Total energy + Delta-G solvation = -3067.589616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.47636 -37.36982 -35.50149 -33.46545 -32.38134 -31.06020 -29.98708 -29.02987 -27.46183 -25.16421 -23.94349 -23.47721 -22.04035 -21.27873 -20.63686 -19.83745 -19.34978 -16.45254 -16.20012 -15.73402 -15.16487 -15.01380 -14.69421 -14.52307 -14.46343 -14.25522 -13.99118 -13.26855 -13.02086 -12.69563 -12.53694 -12.51194 -12.39781 -12.07804 -12.03543 -11.78562 -11.50762 -11.38636 -11.28321 -11.17695 -11.00804 -10.91256 -10.80005 -10.70438 -10.46724 -10.45615 -10.21478 -10.13710 -9.73085 -9.25452 -9.01150 -8.39557 -8.34474 -7.93868 -5.99231 -4.01331 3.32803 3.39080 3.42754 3.74131 4.47008 4.48550 4.56765 4.58429 4.62510 5.01349 5.06600 5.12519 5.18285 5.31618 5.32684 5.36791 5.37741 5.42359 5.45435 5.49683 5.52817 5.59419 5.66149 5.72433 5.73651 5.82420 5.84680 5.90848 5.91637 5.96772 5.97137 6.03156 6.17981 6.22164 6.29424 6.34744 6.39303 6.52968 6.58787 6.93421 6.99563 7.01697 7.10827 7.55760 7.64029 7.81968 7.94421 8.01550 8.43911 9.05404 9.62803 11.11988 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.002745 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.158140 B =10199.670726 C =11134.986830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.121 4.121 17 C 0.059 3.941 18 N -0.537 5.537 19 C 0.056 3.944 20 C -0.111 4.111 21 C -0.095 4.095 22 C -0.146 4.146 23 C -0.112 4.112 24 C 0.048 3.952 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.352 0.648 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.029 0.971 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 1.212 21.403 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.323 5.323 15 C -0.069 4.069 16 C -0.159 4.159 17 C -0.069 4.069 18 N -0.262 5.262 19 C -0.072 4.072 20 C -0.149 4.149 21 C -0.113 4.113 22 C -0.203 4.203 23 C -0.150 4.150 24 C -0.080 4.080 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.047 0.953 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.506 0.902 21.523 23.160 hybrid contribution 0.367 0.355 -0.942 1.071 sum -8.139 1.257 20.581 22.167 Atomic orbital electron populations 1.21788 0.95893 1.01620 1.00060 1.21589 0.94401 0.96079 0.90662 0.94547 1.21830 0.99682 0.99430 0.94318 1.19124 0.88779 0.96823 0.96927 1.21239 0.91944 1.34281 1.08260 0.92687 1.25028 0.97095 0.95644 0.96706 1.69961 1.02364 1.44189 1.36973 0.86602 0.78146 0.79960 0.83346 1.20730 1.21229 1.19862 1.60590 1.34730 1.32543 1.04420 1.21869 0.99707 0.94266 0.91008 1.21715 1.02481 0.98471 0.93238 1.22076 0.98108 0.96860 0.89861 1.61959 1.57525 1.03955 1.02745 1.22070 0.98514 0.96657 0.90002 1.21643 1.00802 0.95537 0.96906 1.21193 0.99529 0.95358 0.95268 1.21810 1.00801 0.99929 0.97776 1.21669 1.02055 0.97717 0.93590 1.22235 0.95184 0.90917 0.99660 0.93918 0.93089 0.92432 0.92484 0.92796 0.97022 0.96611 0.93031 0.82611 0.91929 0.95414 0.90879 0.90973 0.95106 0.90664 0.90860 0.95222 0.90978 0.91813 0.91792 0.92522 0.92913 0.92788 0.91686 0.90965 0.95251 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.41 37.16 0.35 -1.68 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.04 0.67 7.80 -51.93 -0.41 0.27 16 4 C -0.11 -2.40 4.74 -26.74 -0.13 -2.52 16 5 C 0.02 0.53 4.80 -27.89 -0.13 0.40 16 6 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 7 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 N -0.69 -11.71 6.31 -106.73 -0.67 -12.38 16 15 C 0.06 0.89 5.48 -3.83 -0.02 0.87 16 16 C -0.12 -1.55 4.72 -26.73 -0.13 -1.68 16 17 C 0.06 0.67 5.27 -3.83 -0.02 0.65 16 18 N -0.54 -5.97 4.80 -234.68 -1.13 -7.09 16 19 C 0.06 0.53 5.42 -3.84 -0.02 0.51 16 20 C -0.11 -0.93 5.38 -26.65 -0.14 -1.07 16 21 C -0.09 -0.77 2.79 -90.49 -0.25 -1.02 16 22 C -0.15 -1.02 9.20 37.16 0.34 -0.68 16 23 C -0.11 -1.02 5.38 -26.64 -0.14 -1.16 16 24 C 0.05 0.50 4.85 -3.83 -0.02 0.48 16 25 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 26 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.35 6.68 6.47 -39.29 -0.25 6.42 16 34 H 0.06 0.85 7.44 -51.93 -0.39 0.46 16 35 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.07 0.91 6.21 -51.93 -0.32 0.59 16 38 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.96 5.81 -51.93 -0.30 0.66 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -29.33 386.27 -11.55 -40.88 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -10.38 Total: 1.43 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.90 Total: -19.21 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.06 Total: -45.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.33 -11.55 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.243 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds