Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99996 * 2 1 3 5 5 C 1.46850 * 110.99915 * 50.79038 * 4 2 1 6 6 C 1.53032 * 109.52098 * 185.84118 * 5 4 2 7 7 C 1.53119 * 109.28205 * 300.81949 * 6 5 4 8 8 C 1.52998 * 109.52473 * 177.56210 * 7 6 5 9 9 N 1.46894 * 109.47405 * 65.31881 * 8 7 6 10 10 C 1.46900 * 110.99936 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47087 * 324.99745 * 10 9 8 12 12 C 1.52999 * 109.47066 * 85.00141 * 10 9 8 13 13 C 1.53008 * 109.46795 * 204.99874 * 10 9 8 14 14 C 1.52995 * 109.47078 * 64.99886 * 13 10 9 15 15 C 1.50698 * 109.47032 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99499 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00710 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47216 * 89.99744 * 19 17 15 21 21 H 1.48498 * 109.47662 * 210.00494 * 19 17 15 22 22 H 1.48505 * 109.46769 * 330.00286 * 19 17 15 23 23 C 1.53124 * 109.15796 * 57.65213 * 7 6 5 24 24 C 1.46844 * 110.99887 * 175.00122 * 4 2 1 25 25 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 26 26 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 27 27 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 29 29 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 31 31 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 32 32 H 1.09005 * 109.46314 * 305.85713 * 5 4 2 33 33 H 1.08998 * 109.46244 * 65.82281 * 5 4 2 34 34 H 1.09004 * 109.50441 * 180.87586 * 6 5 4 35 35 H 1.08999 * 109.50499 * 60.76414 * 6 5 4 36 36 H 1.09000 * 109.57347 * 297.72178 * 7 6 5 37 37 H 1.09002 * 109.46532 * 185.31771 * 8 7 6 38 38 H 1.09001 * 109.46925 * 305.31177 * 8 7 6 39 39 H 1.00903 * 110.99800 * 303.95080 * 9 8 7 40 40 H 1.08998 * 109.47300 * 59.99374 * 12 10 9 41 41 H 1.08994 * 109.47072 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.47197 * 299.99656 * 12 10 9 43 43 H 1.08994 * 109.46429 * 185.00077 * 13 10 9 44 44 H 1.08998 * 109.46768 * 304.99762 * 13 10 9 45 45 H 1.08993 * 109.47392 * 299.99931 * 14 13 10 46 46 H 1.09004 * 109.47057 * 59.99994 * 14 13 10 47 47 H 0.97001 * 120.00031 * 180.02562 * 18 17 15 48 48 H 1.08997 * 109.50392 * 182.40446 * 23 7 6 49 49 H 1.09000 * 109.49712 * 62.29080 * 23 7 6 50 50 H 1.08995 * 109.46267 * 294.17336 * 24 4 2 51 51 H 1.09000 * 109.46172 * 54.15831 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3779 -2.0050 1.3482 6 6 1.8001 -2.6329 2.6784 7 6 3.3237 -2.7829 2.7056 8 6 3.7572 -3.3540 4.0572 9 7 3.2368 -4.7201 4.2012 10 6 3.6348 -5.3019 5.4901 11 1 4.6308 -4.9482 5.7563 12 6 2.6375 -4.8785 6.5704 13 6 3.6484 -6.8278 5.3783 14 6 4.7330 -7.2570 4.3883 15 6 4.7467 -8.7600 4.2787 16 1 4.0511 -9.3499 4.8570 17 6 5.6466 -9.3819 3.4394 18 7 6.4933 -8.6634 2.7347 19 14 5.6632 -11.2447 3.3030 20 1 4.7393 -11.6701 2.2210 21 1 7.0393 -11.7059 2.9886 22 1 5.2241 -11.8392 4.5910 23 6 3.9677 -1.4089 2.5002 24 6 3.4826 -0.8164 1.1752 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.2947 -1.8837 1.3314 33 1 1.6832 -2.6537 0.5272 34 1 1.3360 -3.6138 2.7814 35 1 1.4829 -1.9915 3.5006 36 1 3.6387 -3.4557 1.9080 37 1 4.8457 -3.3722 4.1116 38 1 3.3638 -2.7289 4.8588 39 1 2.2341 -4.7387 4.0899 40 1 1.6415 -5.2321 6.3041 41 1 2.9326 -5.3105 7.5266 42 1 2.6279 -3.7914 6.6500 43 1 3.8566 -7.2618 6.3562 44 1 2.6770 -7.1749 5.0262 45 1 4.5247 -6.8230 3.4104 46 1 5.7043 -6.9099 4.7405 47 1 7.1262 -9.1008 2.1439 48 1 5.0522 -1.5153 2.4760 49 1 3.6845 -0.7483 3.3197 50 1 3.7781 -1.4707 0.3551 51 1 3.9282 0.1681 1.0331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -28.728421 kcal Electronic energy + Delta-G solvation = -23024.249408 eV Core-core repulsion = 19957.002630 eV Total energy + Delta-G solvation = -3067.246778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.62371 -37.39804 -35.41647 -33.13065 -31.88024 -31.14291 -29.98579 -28.66864 -27.45240 -25.61907 -24.84243 -22.90914 -22.05415 -21.16790 -20.32479 -19.80725 -19.48774 -16.63154 -16.06532 -15.54216 -15.03644 -14.95020 -14.64107 -14.40218 -14.17368 -14.10545 -13.50180 -13.24917 -13.00163 -12.86488 -12.56903 -12.46320 -12.30827 -12.19183 -11.98535 -11.77085 -11.50751 -11.30020 -11.25179 -11.21499 -11.18442 -11.07017 -10.83510 -10.53216 -10.41746 -10.38848 -10.06264 -9.90858 -9.58018 -9.15937 -8.85754 -8.41556 -8.19828 -7.77562 -5.85371 -3.86244 3.38920 3.44724 3.48158 3.70499 4.50592 4.56587 4.62972 4.72139 4.77258 4.93300 5.05514 5.11587 5.21899 5.31938 5.37155 5.40176 5.43446 5.49959 5.50095 5.56624 5.58695 5.60079 5.68146 5.69235 5.73553 5.74783 5.78123 5.93333 5.97256 5.99718 6.02767 6.11995 6.14876 6.18642 6.27477 6.35439 6.46068 6.57949 6.74665 6.94786 7.01501 7.02113 7.36960 7.61041 7.88449 7.91446 8.12613 8.28077 8.61641 9.23053 9.76041 11.25694 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.003080 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.589435 B = 9089.358758 C = 9722.535101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.144 4.144 4 N -0.533 5.533 5 C 0.052 3.948 6 C -0.111 4.111 7 C -0.088 4.088 8 C 0.068 3.932 9 N -0.671 5.671 10 C 0.084 3.916 11 H 0.070 0.930 12 C -0.180 4.180 13 C -0.098 4.098 14 C 0.030 3.970 15 C -0.517 4.517 16 H 0.050 0.950 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.109 4.109 24 C 0.054 3.946 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.333 0.667 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.006 0.994 47 H 0.257 0.743 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.033 0.967 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 20.338 -2.618 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.259 5.259 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.107 4.107 8 C -0.061 4.061 9 N -0.302 5.302 10 C -0.026 4.026 11 H 0.088 0.912 12 C -0.239 4.239 13 C -0.136 4.136 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.147 4.147 24 C -0.073 4.073 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.024 0.976 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.016 20.310 -2.685 22.804 hybrid contribution -0.247 -1.097 -0.230 1.148 sum -10.262 19.213 -2.915 21.976 Atomic orbital electron populations 1.21956 0.94513 1.02119 1.02105 1.21592 0.95486 0.95119 0.91188 1.21854 1.01057 0.95295 1.01913 1.62024 1.05777 1.20029 1.38108 1.22176 0.99211 0.88772 0.97425 1.21635 0.95980 1.00199 0.97029 1.21224 0.94878 0.96012 0.98561 1.21948 1.00183 0.89009 0.94993 1.60534 1.16869 1.18954 1.33847 1.21721 0.97296 0.97387 0.86179 0.91163 1.22530 1.00451 1.00153 1.00738 1.21624 1.01112 0.90792 1.00082 1.18983 0.92100 0.94776 0.94835 1.21364 1.17302 0.92770 1.24123 0.93149 1.25003 0.95819 0.97725 0.95953 1.69985 1.21024 1.34843 1.27652 0.86686 0.77060 0.86511 0.78250 1.20817 1.21378 1.20055 1.21584 0.99792 0.96231 0.97122 1.22118 0.87556 1.00278 0.97375 0.91776 0.92381 0.92282 0.94422 0.92606 0.92491 0.91849 0.90444 0.94878 0.91203 0.91671 0.90248 0.91202 0.96090 0.84887 0.92900 0.92376 0.93762 0.93653 0.93587 0.94939 0.97563 0.93301 0.91385 0.91424 0.94912 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.65 37.16 0.32 -0.84 16 2 C 0.07 0.66 2.69 -67.71 -0.18 0.48 16 3 C -0.14 -1.11 9.10 37.16 0.34 -0.77 16 4 N -0.53 -5.48 4.52 -226.69 -1.03 -6.51 16 5 C 0.05 0.55 5.01 -3.83 -0.02 0.53 16 6 C -0.11 -1.24 5.09 -26.65 -0.14 -1.38 16 7 C -0.09 -1.10 2.46 -90.50 -0.22 -1.33 16 8 C 0.07 0.96 4.95 -3.83 -0.02 0.94 16 9 N -0.67 -10.98 5.70 -106.73 -0.61 -11.59 16 10 C 0.08 1.44 2.59 -67.71 -0.18 1.27 16 11 H 0.07 1.27 7.80 -51.93 -0.40 0.87 16 12 C -0.18 -2.51 9.16 37.16 0.34 -2.17 16 13 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 14 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 15 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 19 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -1.20 5.38 -26.65 -0.14 -1.34 16 24 C 0.05 0.57 5.29 -3.84 -0.02 0.55 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 6.19 -51.93 -0.32 0.14 16 28 H 0.04 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.05 0.43 6.40 -51.93 -0.33 0.10 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.75 5.83 -51.93 -0.30 0.44 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.80 6.81 -51.93 -0.35 0.45 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.02 0.28 7.44 -51.93 -0.39 -0.11 16 39 H 0.33 4.97 6.80 -39.29 -0.27 4.70 16 40 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.70 6.18 -51.93 -0.32 0.38 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -30.78 382.00 -10.96 -41.74 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -10.20 Total: -0.09 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.59 Total: -19.55 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.90 Total: -45.16 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.78 -10.96 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds