Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99996 * 2 1 3 5 5 C 1.46853 * 110.99832 * 299.21245 * 4 2 1 6 6 C 1.53033 * 109.52262 * 174.16246 * 5 4 2 7 7 C 1.53112 * 109.27992 * 59.17361 * 6 5 4 8 8 C 1.53005 * 109.57469 * 182.40894 * 7 6 5 9 9 N 1.46896 * 109.47352 * 294.71584 * 8 7 6 10 10 C 1.46894 * 111.00332 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46977 * 35.00404 * 10 9 8 12 12 C 1.52994 * 109.47632 * 275.00414 * 10 9 8 13 13 C 1.52999 * 109.47125 * 155.00164 * 10 9 8 14 14 C 1.53003 * 109.47535 * 295.00251 * 13 10 9 15 15 C 1.50693 * 109.47637 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99801 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00358 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00205 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99805 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47229 * 90.00387 * 19 17 15 21 21 H 1.48500 * 109.47149 * 210.00306 * 19 17 15 22 22 H 1.48508 * 109.47413 * 330.00144 * 19 17 15 23 23 C 1.53120 * 109.16707 * 302.34582 * 7 6 5 24 24 C 1.46844 * 110.99887 * 175.00122 * 4 2 1 25 25 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 26 26 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 27 27 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 29 29 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 31 31 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 32 32 H 1.09001 * 109.46125 * 294.17808 * 5 4 2 33 33 H 1.09003 * 109.46462 * 54.14202 * 5 4 2 34 34 H 1.09007 * 109.50330 * 299.23709 * 6 5 4 35 35 H 1.09002 * 109.50417 * 179.12117 * 6 5 4 36 36 H 1.09005 * 109.52421 * 62.25399 * 7 6 5 37 37 H 1.08997 * 109.46926 * 54.71720 * 8 7 6 38 38 H 1.09005 * 109.46890 * 174.71737 * 8 7 6 39 39 H 1.00903 * 110.99897 * 56.04685 * 9 8 7 40 40 H 1.09006 * 109.46931 * 300.00018 * 12 10 9 41 41 H 1.09004 * 109.46870 * 59.99506 * 12 10 9 42 42 H 1.08996 * 109.47458 * 179.97438 * 12 10 9 43 43 H 1.08998 * 109.47035 * 55.00425 * 13 10 9 44 44 H 1.09008 * 109.47266 * 175.00318 * 13 10 9 45 45 H 1.09003 * 109.46727 * 300.00410 * 14 13 10 46 46 H 1.08998 * 109.46889 * 59.99775 * 14 13 10 47 47 H 0.97004 * 120.00338 * 180.02562 * 18 17 15 48 48 H 1.08996 * 109.49890 * 297.71825 * 23 7 6 49 49 H 1.08994 * 109.50831 * 177.59288 * 23 7 6 50 50 H 1.09000 * 109.46299 * 305.85220 * 24 4 2 51 51 H 1.08998 * 109.46010 * 65.83553 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5641 -0.0158 2.4206 6 6 1.9679 -0.8418 3.6440 7 6 3.4903 -1.0032 3.6650 8 6 3.8967 -1.8785 4.8523 9 7 3.5691 -1.1863 6.1058 10 6 3.9456 -1.9991 7.2700 11 1 4.8567 -2.5541 7.0463 12 6 2.8172 -2.9803 7.5935 13 6 4.1875 -1.0854 8.4732 14 6 5.3961 -0.1886 8.1978 15 6 5.6347 0.7109 9.3831 16 1 4.9887 0.6494 10.2464 17 6 6.6771 1.6131 9.3650 18 7 6.8857 2.3977 10.3996 19 14 7.7941 1.7200 7.8716 20 1 7.2455 2.7130 6.9132 21 1 9.1523 2.1421 8.2985 22 1 7.8724 0.3900 7.2157 23 6 3.9436 -1.6665 2.3615 24 6 3.4826 -0.8164 1.1752 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.0227 0.9712 2.4814 33 1 0.4794 0.0889 2.3949 34 1 1.4986 -1.8242 3.5908 35 1 1.6434 -0.3315 4.5509 36 1 3.9593 -0.0235 3.7574 37 1 3.3570 -2.8244 4.8078 38 1 4.9691 -2.0697 4.8124 39 1 2.5910 -0.9403 6.1381 40 1 1.9061 -2.4253 7.8173 41 1 2.6448 -3.6312 6.7363 42 1 3.0967 -3.5837 8.4571 43 1 3.3065 -0.4662 8.6421 44 1 4.3798 -1.6927 9.3578 45 1 6.2770 -0.8079 8.0288 46 1 5.2038 0.4187 7.3133 47 1 7.6189 3.0328 10.3868 48 1 3.5053 -2.6617 2.2882 49 1 5.0307 -1.7452 2.3520 50 1 3.7913 -1.2934 0.2450 51 1 3.9321 0.1743 1.2421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = -26.750147 kcal Electronic energy + Delta-G solvation = -23232.004450 eV Core-core repulsion = 20164.843456 eV Total energy + Delta-G solvation = -3067.160994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83628 -37.56181 -35.52545 -33.12741 -31.90746 -30.98211 -30.25264 -28.90617 -27.51420 -25.75692 -25.02730 -23.53056 -22.13102 -20.94630 -20.49069 -19.74859 -19.30406 -16.59658 -16.40637 -15.52424 -15.33249 -14.96982 -14.75159 -14.36960 -14.18986 -14.12177 -13.79759 -13.37419 -13.15791 -12.95053 -12.57869 -12.51999 -12.35280 -12.32625 -12.18714 -12.02794 -11.69402 -11.57443 -11.41212 -11.32048 -11.30457 -10.93392 -10.87751 -10.63403 -10.55055 -10.23731 -10.12250 -9.79765 -9.58953 -9.42418 -8.98079 -8.45146 -8.40456 -7.94157 -5.92126 -3.87758 3.41074 3.46893 3.53844 3.67455 4.38758 4.53462 4.57771 4.65853 4.75080 4.81559 4.94739 5.03604 5.13580 5.20401 5.25185 5.31128 5.33130 5.43261 5.43894 5.46168 5.50895 5.54105 5.56672 5.61133 5.65023 5.68672 5.70445 5.84586 5.87475 5.92662 5.96547 6.01357 6.05047 6.09572 6.16912 6.25884 6.32659 6.45599 6.59734 6.76935 6.94056 6.94499 7.15360 7.42937 7.57571 7.74549 7.79491 7.97205 8.68841 9.14400 9.72381 11.21861 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.003618 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.644972 B = 7736.814425 C = 8590.197490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.189 4.189 4 N -0.531 5.531 5 C 0.051 3.949 6 C -0.111 4.111 7 C -0.088 4.088 8 C 0.067 3.933 9 N -0.676 5.676 10 C 0.081 3.919 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.090 4.090 14 C -0.006 4.006 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.063 3.937 18 N -0.910 5.910 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.110 4.110 24 C 0.055 3.945 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.335 0.665 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.006 0.994 46 H 0.026 0.974 47 H 0.260 0.740 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 -8.484 -21.987 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.248 4.248 4 N -0.256 5.256 5 C -0.077 4.077 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.063 4.063 9 N -0.306 5.306 10 C -0.029 4.029 11 H 0.088 0.912 12 C -0.238 4.238 13 C -0.128 4.128 14 C -0.043 4.043 15 C -0.553 4.553 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.550 5.550 19 Si 0.711 3.289 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.190 1.190 23 C -0.148 4.148 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.463 -8.459 -21.907 26.132 hybrid contribution 0.343 0.358 -0.700 0.858 sum -11.120 -8.101 -22.607 26.464 Atomic orbital electron populations 1.21876 0.94394 1.02364 1.01658 1.21685 0.95734 0.92408 0.93469 1.22498 1.01611 0.98221 1.02429 1.62206 1.10773 1.50874 1.01745 1.22159 1.00267 0.95724 0.89546 1.21639 0.95790 1.00526 0.96959 1.21230 0.95669 1.00162 0.93675 1.21964 1.00554 0.94473 0.89294 1.60576 1.24916 1.44348 1.00810 1.21756 0.96505 0.92827 0.91797 0.91154 1.22508 0.99996 1.00111 1.01213 1.21446 1.00251 0.97019 0.94043 1.19460 0.92651 0.94857 0.97337 1.21278 1.13738 1.18155 1.02177 0.91431 1.25029 0.97425 0.95359 0.95902 1.69932 1.31428 1.23508 1.30176 0.86729 0.79791 0.78835 0.83586 1.20446 1.21831 1.19030 1.21591 1.00335 0.99414 0.93453 1.22076 0.87398 0.98894 0.98880 0.92422 0.92420 0.91896 0.90231 0.92469 0.92211 0.92165 0.94458 0.90641 0.91608 0.91173 0.90407 0.95809 0.91323 0.84591 0.92722 0.93689 0.92213 0.92967 0.92976 0.97585 0.95524 0.93005 0.91337 0.91482 0.91118 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.99 37.16 0.33 -0.71 16 2 C 0.08 0.61 2.96 -67.71 -0.20 0.41 16 3 C -0.19 -1.51 8.50 37.16 0.32 -1.19 16 4 N -0.53 -5.04 4.64 -226.68 -1.05 -6.09 16 5 C 0.05 0.50 4.63 -3.83 -0.02 0.48 16 6 C -0.11 -1.16 5.10 -26.66 -0.14 -1.30 16 7 C -0.09 -1.02 2.46 -90.50 -0.22 -1.24 16 8 C 0.07 0.86 4.95 -3.82 -0.02 0.84 16 9 N -0.68 -10.22 5.70 -106.73 -0.61 -10.83 16 10 C 0.08 1.30 2.59 -67.72 -0.18 1.12 16 11 H 0.07 1.17 7.80 -51.93 -0.41 0.76 16 12 C -0.18 -2.36 9.16 37.15 0.34 -2.02 16 13 C -0.09 -1.81 4.83 -26.73 -0.13 -1.94 16 14 C -0.01 -0.14 3.93 -27.89 -0.11 -0.25 16 15 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 16 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -29.06 13.96 55.43 0.77 -28.28 16 19 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 23 C -0.11 -1.10 5.38 -26.65 -0.14 -1.24 16 24 C 0.06 0.53 5.02 -3.83 -0.02 0.51 16 25 H 0.06 0.43 6.30 -51.93 -0.33 0.10 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.06 0.49 6.65 -51.93 -0.35 0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 32 H 0.04 0.40 6.62 -51.93 -0.34 0.05 16 33 H 0.08 0.69 6.03 -51.93 -0.31 0.38 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.75 6.81 -51.93 -0.35 0.40 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.29 7.43 -51.93 -0.39 -0.10 16 38 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 39 H 0.34 4.64 6.80 -39.29 -0.27 4.38 16 40 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.01 0.15 7.20 -51.93 -0.37 -0.23 16 46 H 0.03 0.67 7.18 -51.93 -0.37 0.30 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 51 H 0.04 0.37 6.73 -51.93 -0.35 0.02 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -31.30 375.75 -10.56 -41.86 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -10.06 Total: -0.15 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.61 Total: -20.32 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.89 Total: -45.20 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.30 -10.56 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.114 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds