Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.46879 * 2 1 4 4 C 1.52998 * 109.46900 * 239.99545 * 2 1 3 5 5 C 1.53002 * 109.47117 * 175.46910 * 4 2 1 6 6 C 1.50703 * 109.47143 * 179.08375 * 5 4 2 7 7 H 1.08001 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99715 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00148 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99754 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47224 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46964 * 119.99690 * 10 8 6 13 13 H 1.48499 * 109.46859 * 239.99799 * 10 8 6 14 14 N 1.46901 * 109.46976 * 120.00030 * 2 1 3 15 15 C 1.44799 * 112.17964 * 15.22540 * 14 2 1 16 16 C 1.54489 * 108.20456 * 65.23786 * 15 14 2 17 17 C 1.53333 * 111.18675 * 307.75331 * 15 14 2 18 18 C 1.52675 * 112.94605 * 184.15617 * 15 14 2 19 19 C 1.52842 * 110.35572 * 49.41625 * 18 15 14 20 20 N 1.47233 * 109.22643 * 180.84010 * 19 18 15 21 21 C 1.52838 * 108.54054 * 299.84120 * 19 18 15 22 22 C 1.44795 * 112.17982 * 236.27146 * 14 2 1 23 23 C 1.53338 * 111.16896 * 52.10346 * 22 14 2 24 24 C 1.54510 * 108.18563 * 294.65711 * 22 14 2 25 25 H 1.09001 * 109.46677 * 309.72262 * 1 2 3 26 26 H 1.08992 * 109.47164 * 69.71963 * 1 2 3 27 27 H 1.09000 * 109.47103 * 189.72201 * 1 2 3 28 28 H 1.09000 * 109.47638 * 295.47332 * 4 2 1 29 29 H 1.09006 * 109.46981 * 55.47485 * 4 2 1 30 30 H 1.08994 * 109.46854 * 299.08466 * 5 4 2 31 31 H 1.08999 * 109.46862 * 59.08045 * 5 4 2 32 32 H 0.96999 * 119.99797 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47242 * 199.00618 * 16 15 14 34 34 H 1.08999 * 109.46870 * 79.01022 * 16 15 14 35 35 H 1.09000 * 109.47188 * 319.01112 * 16 15 14 36 36 H 1.08995 * 109.47436 * 213.72050 * 17 15 14 37 37 H 1.08999 * 109.47369 * 333.72506 * 17 15 14 38 38 H 1.09000 * 109.46809 * 93.72487 * 17 15 14 39 39 H 1.09236 * 109.43655 * 169.83233 * 18 15 14 40 40 H 1.09236 * 109.43948 * 288.99279 * 18 15 14 41 41 H 1.08694 * 110.44270 * 61.04261 * 19 18 15 42 42 H 1.00897 * 111.00134 * 179.97438 * 20 19 18 43 43 H 1.00902 * 111.00022 * 303.94910 * 20 19 18 44 44 H 1.09254 * 109.36387 * 180.49611 * 21 19 18 45 45 H 1.09240 * 109.38163 * 299.55440 * 21 19 18 46 46 H 1.09000 * 109.46858 * 190.27108 * 23 22 14 47 47 H 1.08996 * 109.47609 * 310.27767 * 23 22 14 48 48 H 1.09002 * 109.46831 * 70.27320 * 23 22 14 49 49 H 1.08997 * 109.47039 * 300.98737 * 24 22 14 50 50 H 1.09000 * 109.47295 * 60.99356 * 24 22 14 51 51 H 1.09006 * 109.46765 * 180.99068 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5658 -0.6234 -1.3075 6 6 4.0698 -1.3532 -2.5260 7 1 3.3717 -1.8386 -3.1919 8 6 5.4221 -1.4020 -2.7899 9 7 6.2722 -0.8112 -1.9787 10 14 6.0469 -2.3071 -4.2999 11 1 4.8972 -2.8820 -5.0435 12 1 6.7802 -1.3594 -5.1769 13 1 6.9600 -3.4000 -3.8792 14 7 2.0197 -0.6925 1.1995 15 6 0.9821 -1.4708 1.8432 16 6 0.5654 -2.6072 0.8832 17 6 -0.2656 -0.6197 2.1074 18 6 1.4447 -2.1166 3.1469 19 6 2.1307 -1.0820 4.0386 20 7 2.5840 -1.7346 5.2782 21 6 3.3416 -0.5234 3.2920 22 6 2.9038 0.1396 1.9884 23 6 2.2597 1.4969 2.2950 24 6 4.1764 0.4153 1.1566 25 1 -0.3633 0.6568 0.7905 26 1 -0.3633 0.3562 -0.9639 27 1 -0.3633 -1.0129 0.1735 28 1 1.7445 -1.7698 -1.2095 29 1 1.6120 -0.2565 -2.1374 30 1 3.8607 0.4243 -1.3637 31 1 3.9932 -1.0737 -0.4116 32 1 7.2236 -0.8453 -2.1647 33 1 -0.4122 -2.9900 1.1760 34 1 1.2998 -3.4112 0.9315 35 1 0.5147 -2.2222 -0.1353 36 1 -0.7410 -0.9488 3.0314 37 1 0.0217 0.4277 2.1997 38 1 -0.9648 -0.7330 1.2788 39 1 0.5823 -2.5331 3.6723 40 1 2.1453 -2.9245 2.9239 41 1 1.4397 -0.2824 4.2931 42 1 3.0423 -1.0740 5.8878 43 1 1.8162 -2.1893 5.7491 44 1 3.8478 0.2122 3.9217 45 1 4.0376 -1.3358 3.0709 46 1 3.0059 2.1640 2.7266 47 1 1.8728 1.9320 1.3735 48 1 1.4423 1.3595 3.0029 49 1 4.6558 -0.5298 0.9018 50 1 3.9055 0.9435 0.2424 51 1 4.8656 1.0270 1.7389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = 76.214020 kcal Electronic energy + Delta-G solvation = -25737.873965 eV Core-core repulsion = 22675.177832 eV Total energy + Delta-G solvation = -3062.696133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03348 -36.45422 -35.36878 -33.47271 -32.05274 -30.09359 -29.22268 -27.90989 -27.06583 -26.59936 -25.97904 -24.31116 -21.34509 -21.11814 -20.37388 -19.52310 -17.60610 -16.32881 -15.98062 -15.53387 -15.20846 -14.58701 -14.43259 -14.18063 -13.92157 -13.66857 -13.41837 -13.09343 -12.95477 -12.61516 -12.40706 -11.83359 -11.81510 -11.58451 -11.41320 -11.39352 -11.27073 -11.02335 -10.94843 -10.90540 -10.76640 -10.64156 -10.45743 -10.30167 -10.21454 -9.83689 -9.79813 -9.51204 -9.13726 -8.78099 -8.68620 -8.54187 -8.11396 -7.30609 -5.84043 -3.83081 3.38920 3.46649 3.50590 4.11140 4.40324 4.58572 4.89463 4.99391 5.11514 5.24815 5.25771 5.41991 5.50181 5.51864 5.57726 5.60908 5.63314 5.70925 5.77755 5.88101 5.91572 5.96569 6.04798 6.10005 6.16881 6.17264 6.19482 6.28762 6.30127 6.37440 6.45664 6.49389 6.54557 6.58732 6.64582 6.73045 6.84282 6.90750 7.10282 7.14443 7.33551 7.39492 7.47150 7.89578 7.92712 8.15388 8.21342 8.32788 8.65593 9.25123 9.78690 11.26561 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019543 B = 0.005627 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.429023 B = 4974.960831 C = 5391.155171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.104 3.896 3 H 0.065 0.935 4 C -0.107 4.107 5 C 0.017 3.983 6 C -0.514 4.514 7 H 0.048 0.952 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.882 3.118 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.286 1.286 14 N -0.554 5.554 15 C 0.152 3.848 16 C -0.159 4.159 17 C -0.208 4.208 18 C -0.099 4.099 19 C 0.092 3.908 20 N -0.848 5.848 21 C -0.098 4.098 22 C 0.148 3.852 23 C -0.182 4.182 24 C -0.148 4.148 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.256 0.744 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.337 0.663 43 H 0.336 0.664 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 1.871 12.967 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.003 4.003 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.020 4.020 6 C -0.553 4.553 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.711 3.289 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.212 1.212 14 N -0.278 5.278 15 C 0.062 3.938 16 C -0.216 4.216 17 C -0.266 4.266 18 C -0.137 4.137 19 C -0.019 4.019 20 N -0.377 5.377 21 C -0.136 4.136 22 C 0.058 3.942 23 C -0.241 4.241 24 C -0.205 4.205 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.087 1.162 12.407 16.680 hybrid contribution -0.606 0.804 -0.066 1.009 sum -11.693 1.966 12.342 17.115 Atomic orbital electron populations 1.24224 0.98226 1.03861 1.01237 1.21604 0.91742 0.96910 0.90014 0.91687 1.21894 1.00603 0.98898 0.93072 1.19584 0.88676 0.96098 0.97622 1.21429 0.91661 1.32971 1.09201 0.93344 1.24951 0.97176 0.95853 0.96320 1.69966 1.01948 1.44464 1.37007 0.86692 0.78798 0.79694 0.83697 1.20003 1.21328 1.21243 1.56328 1.26120 1.34805 1.10539 1.20292 0.88358 0.92609 0.92548 1.22717 0.99796 0.98080 1.01052 1.24369 1.00129 1.00596 1.01518 1.21694 0.99808 0.98128 0.94096 1.21263 0.95891 0.94737 0.89980 1.58818 1.33952 1.36423 1.08542 1.21585 0.97048 1.00368 0.94630 1.20412 0.92929 0.88958 0.91886 1.22803 1.00706 0.99243 1.01394 1.22851 0.94854 1.03361 0.99476 0.91440 0.93753 0.88616 0.92754 0.94251 0.97276 0.93326 0.93450 0.93399 0.92210 0.89894 0.94913 0.91918 0.89024 0.92415 0.90487 0.95094 0.85053 0.85219 0.92336 0.90305 0.92704 0.92081 0.93567 0.89782 0.90875 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.00 6.54 37.16 0.24 -2.76 16 2 C 0.10 1.73 1.44 -67.71 -0.10 1.63 16 3 H 0.07 1.14 4.70 -51.93 -0.24 0.90 16 4 C -0.11 -2.18 4.59 -26.73 -0.12 -2.31 16 5 C 0.02 0.42 3.30 -27.88 -0.09 0.32 16 6 C -0.51 -14.62 9.11 -34.44 -0.31 -14.93 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 N -0.55 -8.79 2.75 -196.91 -0.54 -9.33 16 15 C 0.15 2.08 0.67 -131.94 -0.09 1.99 16 16 C -0.16 -2.22 7.44 37.94 0.28 -1.93 16 17 C -0.21 -2.48 6.54 37.33 0.24 -2.23 16 18 C -0.10 -1.29 4.10 -26.98 -0.11 -1.40 16 19 C 0.09 1.14 3.11 -67.69 -0.21 0.93 16 20 N -0.85 -9.15 9.24 -4.71 -0.04 -9.19 16 21 C -0.10 -1.40 4.24 -26.99 -0.11 -1.52 16 22 C 0.15 2.30 0.67 -131.94 -0.09 2.21 16 23 C -0.18 -2.50 7.31 37.33 0.27 -2.23 16 24 C -0.15 -2.79 6.49 37.95 0.25 -2.54 16 25 H 0.07 0.84 4.84 -51.93 -0.25 0.59 16 26 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.10 1.25 2.51 -51.93 -0.13 1.12 16 28 H 0.05 1.13 5.89 -51.93 -0.31 0.82 16 29 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.01 0.25 6.50 -51.93 -0.34 -0.09 16 31 H 0.05 1.28 4.65 -51.93 -0.24 1.04 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 0.56 7.94 -51.93 -0.41 0.14 16 34 H 0.06 0.90 7.76 -51.93 -0.40 0.50 16 35 H 0.08 1.25 3.42 -51.93 -0.18 1.08 16 36 H 0.03 0.36 7.47 -51.93 -0.39 -0.03 16 37 H 0.06 0.78 3.86 -51.93 -0.20 0.58 16 38 H 0.09 1.04 4.36 -57.32 -0.25 0.79 16 39 H 0.06 0.66 7.76 -51.80 -0.40 0.26 16 40 H 0.08 1.15 7.82 -51.80 -0.40 0.74 16 41 H 0.03 0.38 6.83 -52.10 -0.36 0.03 16 42 H 0.34 3.17 9.05 -39.29 -0.36 2.82 16 43 H 0.34 3.05 8.99 -39.29 -0.35 2.70 16 44 H 0.06 0.78 8.07 -51.79 -0.42 0.36 16 45 H 0.08 1.31 8.07 -51.79 -0.42 0.89 16 46 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 47 H 0.06 0.87 5.81 -51.93 -0.30 0.57 16 48 H 0.05 0.59 5.57 -51.93 -0.29 0.30 16 49 H 0.08 1.88 6.13 -51.93 -0.32 1.56 16 50 H 0.07 1.51 4.30 -51.93 -0.22 1.29 16 51 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -29.17 338.00 -8.23 -37.41 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.41 Total: 8.11 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.15 Total: -44.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.17 -8.23 -37.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.621 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds