Wall clock time and date at job start Tue Mar 31 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.52995 * 109.47252 * 120.00079 * 2 1 3 5 5 C 1.52998 * 109.47413 * 180.11907 * 4 2 1 6 6 C 1.50692 * 109.47476 * 181.33633 * 5 4 2 7 7 H 1.08000 * 120.00599 * 5.38883 * 6 5 4 8 8 C 1.37881 * 120.00127 * 185.39687 * 6 5 4 9 9 N 1.31516 * 119.99921 * 185.57635 * 8 6 5 10 10 Si 1.86801 * 120.00066 * 5.57522 * 8 6 5 11 11 H 1.48499 * 109.47177 * 94.44659 * 10 8 6 12 12 H 1.48504 * 109.47092 * 214.44472 * 10 8 6 13 13 H 1.48499 * 109.46932 * 334.44418 * 10 8 6 14 14 N 1.46904 * 109.47009 * 240.00261 * 2 1 3 15 15 C 1.44787 * 112.17947 * 346.91459 * 14 2 1 16 16 C 1.53341 * 111.17047 * 52.08923 * 15 14 2 17 17 C 1.54503 * 108.19119 * 294.63716 * 15 14 2 18 18 C 1.52668 * 113.00696 * 175.70818 * 15 14 2 19 19 C 1.52840 * 110.39412 * 310.81248 * 18 15 14 20 20 N 1.47230 * 109.23522 * 179.06870 * 19 18 15 21 21 C 1.52849 * 108.52954 * 60.06978 * 19 18 15 22 22 C 1.44796 * 112.17855 * 125.87587 * 14 2 1 23 23 C 1.54496 * 108.20111 * 65.26091 * 22 14 2 24 24 C 1.53325 * 111.18645 * 307.78177 * 22 14 2 25 25 H 1.09000 * 109.46987 * 297.18918 * 1 2 3 26 26 H 1.09001 * 109.46943 * 57.18597 * 1 2 3 27 27 H 1.08997 * 109.47036 * 177.18798 * 1 2 3 28 28 H 1.08999 * 109.47167 * 300.12024 * 4 2 1 29 29 H 1.09001 * 109.47075 * 60.12231 * 4 2 1 30 30 H 1.09002 * 109.47141 * 301.34057 * 5 4 2 31 31 H 1.09005 * 109.47049 * 61.33313 * 5 4 2 32 32 H 0.97000 * 120.00102 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47493 * 152.90935 * 16 15 14 34 34 H 1.09001 * 109.47175 * 32.90212 * 16 15 14 35 35 H 1.09005 * 109.46886 * 272.91084 * 16 15 14 36 36 H 1.08993 * 109.47477 * 148.28940 * 17 15 14 37 37 H 1.09007 * 109.46867 * 268.28931 * 17 15 14 38 38 H 1.09001 * 109.47105 * 28.28190 * 17 15 14 39 39 H 1.09237 * 109.44020 * 71.25644 * 18 15 14 40 40 H 1.09242 * 109.43511 * 190.39200 * 18 15 14 41 41 H 1.08694 * 110.43864 * 298.86732 * 19 18 15 42 42 H 1.00889 * 111.00787 * 179.97438 * 20 19 18 43 43 H 1.00898 * 110.99761 * 303.95958 * 20 19 18 44 44 H 1.09230 * 109.37753 * 60.26476 * 21 19 18 45 45 H 1.09229 * 109.37897 * 179.36052 * 21 19 18 46 46 H 1.09005 * 109.47153 * 180.65099 * 23 22 14 47 47 H 1.09001 * 109.47372 * 300.65148 * 23 22 14 48 48 H 1.09001 * 109.47131 * 60.65581 * 23 22 14 49 49 H 1.09000 * 109.47347 * 289.52454 * 24 22 14 50 50 H 1.09000 * 109.47081 * 49.52649 * 24 22 14 51 51 H 1.09002 * 109.47581 * 169.52446 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7187 1.2507 6 6 4.0724 -1.4575 2.4642 7 1 3.3748 -1.9604 3.1175 8 6 5.4228 -1.4914 2.7406 9 7 5.8723 -2.2256 3.7349 10 14 6.6140 -0.4947 1.7027 11 1 6.8620 0.8160 2.3552 12 1 7.8956 -1.2336 1.5731 13 1 6.0312 -0.2742 0.3547 14 7 2.0197 -0.6925 -1.1995 15 6 0.9706 -1.4306 -1.8710 16 6 -0.2472 -0.5392 -2.1424 17 6 0.5049 -2.5674 -0.9340 18 6 1.4342 -2.0721 -3.1765 19 6 2.1697 -1.0487 -4.0411 20 7 2.6242 -1.6988 -5.2815 21 6 3.3844 -0.5405 -3.2649 22 6 2.9427 0.1218 -1.9622 23 6 4.2072 0.3500 -1.1043 24 6 2.3451 1.5009 -2.2651 25 1 -0.3633 0.4696 0.9141 26 1 -0.3633 0.5569 -0.8637 27 1 -0.3633 -1.0264 -0.0504 28 1 1.6750 -0.2087 2.1392 29 1 1.6785 -1.7495 1.2481 30 1 3.9351 -1.2103 0.3490 31 1 3.9316 0.3094 1.2757 32 1 6.8223 -2.2497 3.9291 33 1 -0.7847 -0.9136 -3.0136 34 1 0.0847 0.4817 -2.3312 35 1 -0.9073 -0.5520 -1.2750 36 1 -0.5545 -2.7632 -1.0989 37 1 1.0784 -3.4701 -1.1450 38 1 0.6626 -2.2709 0.1030 39 1 2.1032 -2.9065 -2.9541 40 1 0.5676 -2.4518 -3.7227 41 1 1.5099 -0.2235 -4.2966 42 1 3.1140 -1.0453 -5.8738 43 1 3.1978 -2.5037 -5.0786 44 1 4.0475 -1.3788 -3.0402 45 1 3.9273 0.1845 -3.8755 46 1 4.9128 0.9717 -1.6555 47 1 3.9310 0.8496 -0.1758 48 1 4.6700 -0.6102 -0.8766 49 1 1.5400 1.3962 -2.9925 50 1 1.9507 1.9357 -1.3467 51 1 3.1196 2.1513 -2.6716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:34 Heat of formation + Delta-G solvation = 90.331199 kcal Electronic energy + Delta-G solvation = -25922.602389 eV Core-core repulsion = 22860.518423 eV Total energy + Delta-G solvation = -3062.083966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19739 -36.68111 -35.58794 -33.54436 -32.11161 -30.46868 -29.49409 -27.95963 -27.25638 -26.88907 -26.16038 -24.41998 -21.52895 -20.98802 -20.56321 -19.67292 -17.88534 -16.68793 -16.08591 -15.80126 -15.20025 -14.71153 -14.36355 -14.16557 -13.91415 -13.79293 -13.47318 -13.36630 -13.24281 -12.63549 -12.48674 -12.18986 -12.07636 -11.89242 -11.57085 -11.51991 -11.44752 -11.19956 -11.18807 -10.96175 -10.80117 -10.75818 -10.61246 -10.41500 -10.14484 -9.94728 -9.68167 -9.62711 -9.30075 -8.90024 -8.75586 -8.59995 -8.32909 -7.46047 -5.92682 -3.86873 3.37022 3.45802 3.48875 3.97590 4.39163 4.56079 4.79471 4.86469 5.01768 5.05913 5.11880 5.37186 5.38837 5.41518 5.42931 5.48916 5.51569 5.58441 5.70501 5.76798 5.78330 5.84498 5.93182 6.00687 6.04934 6.07001 6.09770 6.11291 6.14415 6.20872 6.27057 6.32336 6.35013 6.40732 6.49136 6.56677 6.61683 6.70035 6.86880 6.95405 7.02963 7.22742 7.32095 7.55054 7.71755 7.86901 7.98892 8.05319 8.69530 9.15182 9.72091 11.21321 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.006644 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.540766 B = 4213.614359 C = 4801.023877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.101 3.899 3 H 0.064 0.936 4 C -0.098 4.098 5 C -0.015 4.015 6 C -0.515 4.515 7 H 0.065 0.935 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.865 3.135 11 H -0.284 1.284 12 H -0.294 1.294 13 H -0.243 1.243 14 N -0.558 5.558 15 C 0.153 3.847 16 C -0.220 4.220 17 C -0.160 4.160 18 C -0.099 4.099 19 C 0.091 3.909 20 N -0.848 5.848 21 C -0.140 4.140 22 C 0.151 3.849 23 C -0.163 4.163 24 C -0.183 4.183 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.337 0.663 43 H 0.339 0.661 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.062 0.938 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 4.930 -16.305 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.005 4.005 3 H 0.082 0.918 4 C -0.136 4.136 5 C -0.052 4.052 6 C -0.553 4.553 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.693 3.307 11 H -0.211 1.211 12 H -0.221 1.221 13 H -0.167 1.167 14 N -0.282 5.282 15 C 0.063 3.937 16 C -0.277 4.277 17 C -0.217 4.217 18 C -0.137 4.137 19 C -0.020 4.020 20 N -0.375 5.375 21 C -0.179 4.179 22 C 0.061 3.939 23 C -0.220 4.220 24 C -0.242 4.242 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.327 4.440 -16.284 19.787 hybrid contribution 1.503 1.339 -0.238 2.027 sum -8.824 5.779 -16.522 19.602 Atomic orbital electron populations 1.24304 0.97764 1.03695 1.02283 1.21627 0.92305 0.96689 0.89885 0.91791 1.21732 0.99091 0.99269 0.93542 1.20088 0.91609 0.95452 0.98017 1.21324 0.92719 1.32168 1.09081 0.91690 1.25030 0.98343 0.95248 0.95068 1.69948 1.14063 1.40349 1.30649 0.87066 0.80583 0.80203 0.82898 1.21070 1.22076 1.16656 1.56386 1.24085 1.37003 1.10691 1.20276 0.88272 0.92805 0.92321 1.24538 1.00411 0.99841 1.02939 1.22756 0.99334 0.97759 1.01860 1.21718 1.00373 0.97621 0.93977 1.21394 0.95616 0.96550 0.88485 1.59099 1.48668 1.12187 1.17546 1.22441 0.98539 1.00821 0.96146 1.20307 0.92388 0.89366 0.91872 1.23232 0.95551 1.03083 1.00107 1.22797 1.00982 0.98818 1.01636 0.93694 0.89277 0.89657 0.93527 0.92300 0.93872 0.97424 0.93136 0.94343 0.92424 0.87565 0.93136 0.92697 0.89588 0.91564 0.91183 0.90474 0.85124 0.84877 0.91315 0.92162 0.94384 0.90501 0.90068 0.93074 0.91910 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.86 6.63 37.16 0.25 -2.61 16 2 C 0.10 1.56 1.57 -67.71 -0.11 1.46 16 3 H 0.06 1.01 4.72 -51.93 -0.25 0.77 16 4 C -0.10 -1.91 4.69 -26.73 -0.13 -2.03 16 5 C -0.01 -0.34 2.24 -27.89 -0.06 -0.41 16 6 C -0.51 -14.70 9.65 -34.44 -0.33 -15.03 16 7 H 0.06 2.03 7.99 -52.49 -0.42 1.61 16 8 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 9 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 10 Si 0.86 21.38 27.41 -169.99 -4.66 16.72 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.24 -5.39 3.95 56.52 0.22 -5.17 16 14 N -0.56 -8.15 2.64 -196.92 -0.52 -8.67 16 15 C 0.15 1.95 0.67 -131.94 -0.09 1.87 16 16 C -0.22 -2.45 6.30 37.33 0.24 -2.22 16 17 C -0.16 -2.12 7.67 37.95 0.29 -1.83 16 18 C -0.10 -1.19 4.10 -26.98 -0.11 -1.31 16 19 C 0.09 1.03 3.12 -67.69 -0.21 0.82 16 20 N -0.85 -8.47 9.25 -4.71 -0.04 -8.51 16 21 C -0.14 -1.73 4.23 -26.98 -0.11 -1.85 16 22 C 0.15 2.11 0.67 -131.95 -0.09 2.02 16 23 C -0.16 -2.72 5.19 37.94 0.20 -2.53 16 24 C -0.18 -2.28 7.40 37.33 0.28 -2.00 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.02 4.09 -77.13 -0.32 0.70 16 27 H 0.09 1.06 3.28 -51.93 -0.17 0.89 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.18 5.78 -51.93 -0.30 0.88 16 30 H 0.04 1.00 4.45 -51.93 -0.23 0.77 16 31 H 0.01 0.18 5.04 -51.93 -0.26 -0.08 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.04 0.41 7.54 -51.93 -0.39 0.02 16 34 H 0.06 0.66 4.45 -51.93 -0.23 0.43 16 35 H 0.11 1.13 3.81 -85.27 -0.32 0.81 16 36 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 37 H 0.05 0.76 7.51 -51.92 -0.39 0.37 16 38 H 0.09 1.29 3.34 -51.93 -0.17 1.12 16 39 H 0.07 0.87 7.73 -51.80 -0.40 0.47 16 40 H 0.07 0.82 7.74 -51.79 -0.40 0.42 16 41 H 0.08 0.91 6.81 -52.10 -0.36 0.56 16 42 H 0.34 2.90 9.05 -39.30 -0.36 2.54 16 43 H 0.34 3.23 8.97 -39.29 -0.35 2.88 16 44 H 0.07 0.94 8.07 -51.80 -0.42 0.52 16 45 H 0.06 0.69 8.08 -51.80 -0.42 0.27 16 46 H 0.04 0.58 8.13 -51.93 -0.42 0.15 16 47 H 0.08 1.40 4.02 -51.93 -0.21 1.19 16 48 H 0.08 1.57 4.81 -51.93 -0.25 1.32 16 49 H 0.05 0.59 5.39 -51.93 -0.28 0.31 16 50 H 0.06 0.81 5.77 -51.93 -0.30 0.51 16 51 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -30.16 327.86 -8.19 -38.35 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.59 Total: 8.96 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -0.09 Total: -23.90 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.21 Total: -45.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.66 Total: 16.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.16 -8.19 -38.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.681 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds