Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46785 * 2 1 4 4 C 1.52998 * 109.47287 * 239.99895 * 2 1 3 5 5 C 1.53002 * 109.46807 * 173.57373 * 4 2 1 6 6 C 1.50706 * 109.46909 * 184.88402 * 5 4 2 7 7 H 1.07998 * 119.99736 * 4.70657 * 6 5 4 8 8 C 1.37876 * 119.99756 * 184.71008 * 6 5 4 9 9 N 1.31512 * 120.00450 * 5.42347 * 8 6 5 10 10 Si 1.86806 * 119.99503 * 185.42686 * 8 6 5 11 11 H 1.48493 * 109.47278 * 60.00153 * 10 8 6 12 12 H 1.48503 * 109.46776 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47115 * 299.99568 * 10 8 6 14 14 N 1.46898 * 109.46986 * 119.99418 * 2 1 3 15 15 C 1.46902 * 110.99831 * 36.43710 * 14 2 1 16 16 C 1.53007 * 109.47238 * 166.20080 * 15 14 2 17 17 C 1.52996 * 109.47051 * 178.85456 * 16 15 14 18 18 N 1.46905 * 109.47062 * 179.97438 * 17 16 15 19 19 C 1.46900 * 111.00350 * 272.47962 * 14 2 1 20 20 C 1.52997 * 109.47196 * 293.03872 * 19 14 2 21 21 C 1.53002 * 109.47137 * 179.97438 * 20 19 14 22 22 C 1.52997 * 109.47003 * 300.00412 * 21 20 19 23 23 C 1.53002 * 109.47338 * 60.00125 * 22 21 20 24 24 C 1.52998 * 109.47219 * 299.99650 * 23 22 21 25 25 H 1.08998 * 109.47243 * 295.83912 * 1 2 3 26 26 H 1.09000 * 109.46814 * 55.84069 * 1 2 3 27 27 H 1.08998 * 109.46697 * 175.83674 * 1 2 3 28 28 H 1.08998 * 109.47085 * 293.56925 * 4 2 1 29 29 H 1.08990 * 109.47365 * 53.57474 * 4 2 1 30 30 H 1.09000 * 109.47057 * 304.87986 * 5 4 2 31 31 H 1.09003 * 109.47515 * 64.88362 * 5 4 2 32 32 H 0.96999 * 120.00108 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46795 * 286.19776 * 15 14 2 34 34 H 1.09001 * 109.47535 * 46.19737 * 15 14 2 35 35 H 1.08995 * 109.46855 * 298.85807 * 16 15 14 36 36 H 1.08996 * 109.46603 * 58.85964 * 16 15 14 37 37 H 1.08995 * 109.47577 * 299.99908 * 17 16 15 38 38 H 1.09005 * 109.47136 * 59.99959 * 17 16 15 39 39 H 1.00901 * 110.99520 * 180.02562 * 18 17 16 40 40 H 1.00901 * 110.99785 * 303.95239 * 18 17 16 41 41 H 1.09003 * 109.46888 * 173.04020 * 19 14 2 42 42 H 1.09004 * 109.46638 * 59.99972 * 20 19 14 43 43 H 1.08997 * 109.47253 * 300.00613 * 20 19 14 44 44 H 1.09003 * 109.46612 * 60.00352 * 21 20 19 45 45 H 1.08999 * 109.46733 * 180.02562 * 21 20 19 46 46 H 1.09007 * 109.46669 * 179.97438 * 22 21 20 47 47 H 1.08993 * 109.47411 * 299.99519 * 22 21 20 48 48 H 1.08999 * 109.46786 * 179.97438 * 23 22 21 49 49 H 1.09004 * 109.46976 * 59.99654 * 23 22 21 50 50 H 1.09002 * 109.46936 * 300.00649 * 24 23 22 51 51 H 1.08994 * 109.47310 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5615 -0.5829 -1.3324 6 6 4.0512 -1.1887 -2.6226 7 1 3.3424 -1.5598 -3.3480 8 6 5.4040 -1.2693 -2.8766 9 7 6.2690 -0.9166 -1.9509 10 14 6.0079 -1.8793 -4.5357 11 1 5.4941 -0.9892 -5.6074 12 1 7.4928 -1.8708 -4.5555 13 1 5.5173 -3.2623 -4.7631 14 7 2.0197 -0.6924 1.1995 15 6 1.1549 -1.8298 1.5406 16 6 1.8640 -2.7213 2.5621 17 6 0.9518 -3.8904 2.9388 18 7 1.6329 -4.7468 3.9191 19 6 2.1392 0.2362 2.3315 20 6 3.2472 1.2513 2.0436 21 6 3.3712 2.2188 3.2224 22 6 2.0443 2.9544 3.4203 23 6 0.9364 1.9392 3.7082 24 6 0.8123 0.9717 2.5295 25 1 -0.3633 0.4479 0.9249 26 1 -0.3633 0.5770 -0.8504 27 1 -0.3632 -1.0250 -0.0746 28 1 1.7738 -1.7767 -1.1935 29 1 1.5860 -0.2782 -2.1354 30 1 3.8327 0.4724 -1.3007 31 1 4.0202 -1.1014 -0.4904 32 1 7.2207 -0.9736 -2.1296 33 1 0.2212 -1.4616 1.9659 34 1 0.9416 -2.4069 0.6408 35 1 2.7876 -3.1058 2.1296 36 1 2.0952 -2.1389 3.4540 37 1 0.0282 -3.5060 3.3714 38 1 0.7204 -4.4728 2.0469 39 1 1.0506 -5.5271 4.1839 40 1 2.5231 -5.0639 3.5655 41 1 2.3838 -0.3222 3.2351 42 1 3.0025 1.8096 1.1400 43 1 4.1923 0.7272 1.9021 44 1 3.6157 1.6607 4.1262 45 1 4.1603 2.9423 3.0171 46 1 2.1327 3.6433 4.2604 47 1 1.7999 3.5124 2.5165 48 1 -0.0088 2.4633 3.8496 49 1 1.1809 1.3812 4.6121 50 1 0.5679 1.5298 1.6256 51 1 0.0233 0.2483 2.7348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -25.146160 kcal Electronic energy + Delta-G solvation = -24259.103189 eV Core-core repulsion = 21192.011749 eV Total energy + Delta-G solvation = -3067.091440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94094 -36.62288 -35.39629 -33.38347 -31.83752 -30.77184 -30.42351 -29.07384 -27.62495 -25.21178 -23.88294 -22.35156 -22.05673 -21.22826 -20.53454 -20.08657 -18.16283 -16.37876 -16.08725 -15.67207 -15.29511 -14.93740 -14.67247 -14.35898 -14.11963 -14.02621 -13.74342 -13.44676 -12.81684 -12.64117 -12.40710 -12.32598 -12.11011 -11.86848 -11.79868 -11.59648 -11.31432 -11.19868 -11.04049 -10.91485 -10.81361 -10.65196 -10.60476 -10.44467 -10.31952 -10.00619 -9.85814 -9.74729 -9.48081 -9.10385 -8.86500 -8.76548 -8.18675 -7.63584 -5.86106 -3.86423 3.39299 3.43736 3.46256 4.16531 4.55907 4.59396 4.82303 4.91002 5.03543 5.14163 5.27336 5.28263 5.36162 5.47584 5.49388 5.54186 5.54824 5.60854 5.65863 5.67741 5.72042 5.72667 5.79468 5.83596 5.94920 6.00115 6.12500 6.14783 6.22280 6.26472 6.29073 6.33150 6.39127 6.40559 6.50004 6.54436 6.66672 6.74011 6.80055 6.95197 7.05555 7.34877 7.37553 7.68328 7.70703 7.87148 8.12708 8.27129 8.61276 9.22576 9.75544 11.24671 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.005216 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.761807 B = 5366.545284 C = 6501.785586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.097 4.097 5 C 0.033 3.967 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.512 5.512 15 C 0.059 3.941 16 C -0.115 4.115 17 C 0.063 3.937 18 N -0.853 5.853 19 C 0.087 3.913 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.157 4.157 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.002 0.998 31 H 0.035 0.965 32 H 0.258 0.742 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.337 0.663 40 H 0.343 0.657 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 1.611 12.794 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.028 4.028 3 H 0.095 0.905 4 C -0.135 4.135 5 C -0.004 4.004 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.233 5.233 15 C -0.069 4.069 16 C -0.154 4.154 17 C -0.069 4.069 18 N -0.382 5.382 19 C -0.021 4.021 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.195 4.195 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.351 2.077 13.169 17.510 hybrid contribution -0.524 -0.805 -1.594 1.861 sum -11.875 1.272 11.575 16.632 Atomic orbital electron populations 1.22994 0.98696 1.01882 1.02127 1.21901 0.91173 0.98417 0.91310 0.90530 1.21634 1.00583 0.98224 0.93060 1.18964 0.88398 0.96168 0.96881 1.21319 0.91445 1.39495 1.03533 0.93314 1.24974 0.97098 0.95806 0.96352 1.69971 1.01535 1.49036 1.32687 0.86793 0.77520 0.79242 0.85193 1.20437 1.21409 1.20464 1.62224 1.49580 1.08218 1.03279 1.22025 0.93808 0.92692 0.98399 1.21580 0.99129 0.95704 0.98946 1.21757 0.97339 0.94631 0.93136 1.58734 1.08341 1.25546 1.45604 1.21738 0.93585 0.92653 0.94152 1.21579 0.99512 0.96245 0.97541 1.21522 0.96795 0.98358 0.98838 1.21542 0.95395 0.97611 1.01107 1.21489 0.98210 0.97250 0.98351 1.22584 0.99338 0.98720 0.98894 0.91643 0.92865 0.92754 0.93711 0.93779 0.97946 0.94645 0.93233 0.95101 0.90936 0.90962 0.91472 0.91634 0.95614 0.85142 0.84507 0.90417 0.91733 0.90491 0.92284 0.92036 0.92587 0.92181 0.92723 0.92310 0.90782 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.77 7.48 37.16 0.28 -2.49 16 2 C 0.08 1.35 1.61 -67.71 -0.11 1.24 16 3 H 0.08 1.36 5.53 -51.93 -0.29 1.07 16 4 C -0.10 -2.03 4.73 -26.73 -0.13 -2.16 16 5 C 0.03 0.86 4.83 -27.88 -0.13 0.73 16 6 C -0.52 -15.04 9.10 -34.44 -0.31 -15.36 16 7 H 0.05 1.38 7.75 -52.49 -0.41 0.97 16 8 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 9 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 10 Si 0.88 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.51 -8.22 3.91 -218.71 -0.85 -9.07 16 15 C 0.06 0.84 3.46 -3.82 -0.01 0.82 16 16 C -0.12 -1.55 5.52 -26.73 -0.15 -1.70 16 17 C 0.06 0.71 6.79 -3.82 -0.03 0.69 16 18 N -0.85 -9.01 9.62 -10.37 -0.10 -9.11 16 19 C 0.09 1.23 2.07 -67.71 -0.14 1.09 16 20 C -0.11 -1.67 5.20 -26.73 -0.14 -1.81 16 21 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 22 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 23 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 24 C -0.16 -1.89 3.36 -26.73 -0.09 -1.98 16 25 H 0.06 0.82 4.09 -51.93 -0.21 0.61 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.74 6.59 -51.93 -0.34 0.40 16 28 H 0.04 0.94 7.16 -51.93 -0.37 0.57 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.04 1.01 7.92 -51.93 -0.41 0.59 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.03 0.40 5.51 -51.93 -0.29 0.11 16 34 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.93 6.45 -51.93 -0.34 0.59 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.34 2.86 9.08 -39.29 -0.36 2.50 16 40 H 0.34 3.50 8.99 -39.29 -0.35 3.15 16 41 H 0.08 1.10 6.24 -51.93 -0.32 0.78 16 42 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.95 5.37 -51.93 -0.28 0.67 16 51 H 0.06 0.70 5.94 -51.93 -0.31 0.39 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -30.17 368.53 -10.78 -40.96 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -9.56 Total: 4.89 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.53 Total: -23.74 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.22 Total: -44.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.17 -10.78 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.810 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds