Wall clock time and date at job start Tue Mar 31 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46948 * 2 1 4 4 C 1.53002 * 109.46615 * 119.99793 * 2 1 3 5 5 N 1.46898 * 109.46977 * 65.07002 * 4 2 1 6 6 C 1.46849 * 110.99890 * 76.07947 * 5 4 2 7 7 C 1.53042 * 109.52201 * 185.83620 * 6 5 4 8 8 C 1.53117 * 109.28044 * 300.82111 * 7 6 5 9 9 N 1.46897 * 109.52666 * 177.55838 * 8 7 6 10 10 C 1.46897 * 111.00498 * 153.37460 * 9 8 7 11 11 H 1.09007 * 109.47001 * 346.99827 * 10 9 8 12 12 C 1.53003 * 109.46974 * 106.99282 * 10 9 8 13 13 C 1.52992 * 109.47594 * 226.99905 * 10 9 8 14 14 C 1.53002 * 109.47594 * 64.99445 * 13 10 9 15 15 C 1.50697 * 109.47310 * 180.02562 * 14 13 10 16 16 H 1.07993 * 120.00390 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99647 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99644 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47297 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46971 * 120.00600 * 19 17 15 22 22 H 1.48504 * 109.47051 * 239.99870 * 19 17 15 23 23 C 1.53123 * 109.21412 * 57.61835 * 8 7 6 24 24 C 1.46846 * 110.99815 * 200.28726 * 5 4 2 25 25 H 1.09005 * 109.47068 * 303.94186 * 1 2 3 26 26 H 1.08999 * 109.46789 * 63.93786 * 1 2 3 27 27 H 1.08997 * 109.47165 * 183.94159 * 1 2 3 28 28 H 1.08994 * 109.46866 * 239.99943 * 2 1 3 29 29 H 1.09003 * 109.46740 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46840 * 299.99897 * 3 2 1 31 31 H 1.09000 * 109.46996 * 60.00514 * 3 2 1 32 32 H 1.08998 * 109.47576 * 305.07045 * 4 2 1 33 33 H 1.09007 * 109.46828 * 185.06710 * 4 2 1 34 34 H 1.09000 * 109.46471 * 65.82235 * 6 5 4 35 35 H 1.09000 * 109.45595 * 305.84883 * 6 5 4 36 36 H 1.09001 * 109.50561 * 180.87984 * 7 6 5 37 37 H 1.08996 * 109.50252 * 60.76142 * 7 6 5 38 38 H 1.09008 * 109.52387 * 297.68770 * 8 7 6 39 39 H 1.00895 * 110.99999 * 277.33399 * 9 8 7 40 40 H 1.08993 * 109.46882 * 55.52451 * 12 10 9 41 41 H 1.08999 * 109.46809 * 175.52020 * 12 10 9 42 42 H 1.08999 * 109.47327 * 295.52284 * 12 10 9 43 43 H 1.09004 * 109.47239 * 305.00148 * 13 10 9 44 44 H 1.08995 * 109.47629 * 185.00242 * 13 10 9 45 45 H 1.09003 * 109.46679 * 59.99778 * 14 13 10 46 46 H 1.08999 * 109.46855 * 300.00769 * 14 13 10 47 47 H 0.97004 * 119.99843 * 180.02562 * 18 17 15 48 48 H 1.09008 * 109.49966 * 62.32026 * 23 8 7 49 49 H 1.08992 * 109.50144 * 182.43680 * 23 8 7 50 50 H 1.09004 * 109.46178 * 294.17777 * 24 5 4 51 51 H 1.08998 * 109.46425 * 54.15323 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6527 -2.1370 1.1897 6 6 2.5044 -2.8764 0.2492 7 6 1.9826 -4.3077 0.1034 8 6 1.9906 -4.9908 1.4737 9 7 1.4361 -6.3455 1.3502 10 6 1.9708 -7.2305 2.3936 11 1 2.8228 -6.7506 2.8755 12 6 0.8843 -7.5056 3.4351 13 6 2.4186 -8.5504 1.7627 14 6 3.5897 -8.2905 0.8131 15 6 4.0303 -9.5905 0.1913 16 1 3.5253 -10.5101 0.4473 17 6 5.0776 -9.6057 -0.7055 18 7 5.6922 -8.4858 -1.0177 19 14 5.6232 -11.2171 -1.4768 20 1 4.7757 -12.3234 -0.9641 21 1 5.4847 -11.1313 -2.9528 22 1 7.0429 -11.4775 -1.1273 23 6 1.1366 -4.1752 2.4484 24 6 1.6819 -2.7472 2.5250 25 1 -0.3633 0.5738 0.8526 26 1 -0.3633 0.4515 -0.9232 27 1 -0.3633 -1.0252 0.0706 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6044 -0.2625 2.1370 33 1 3.1262 -0.6433 1.2959 34 1 3.5269 -2.8992 0.6261 35 1 2.4864 -2.3824 -0.7223 36 1 2.6241 -4.8608 -0.5827 37 1 0.9650 -4.2860 -0.2865 38 1 3.0135 -5.0485 1.8460 39 1 0.4276 -6.3269 1.3738 40 1 0.0019 -7.9121 2.9409 41 1 1.2550 -8.2245 4.1657 42 1 0.6218 -6.5763 3.9406 43 1 1.5893 -8.9867 1.2058 44 1 2.7324 -9.2397 2.5465 45 1 4.4190 -7.8541 1.3700 46 1 3.2758 -7.6011 0.0293 47 1 6.4287 -8.4965 -1.6489 48 1 0.1052 -4.1514 2.0964 49 1 1.1740 -4.6336 3.4365 50 1 2.7084 -2.7707 2.8912 51 1 1.0666 -2.1597 3.2064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:50 Heat of formation + Delta-G solvation = -31.798715 kcal Electronic energy + Delta-G solvation = -23282.500823 eV Core-core repulsion = 20215.120907 eV Total energy + Delta-G solvation = -3067.379916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43898 -37.30484 -35.44027 -33.29384 -32.20613 -30.76512 -29.68805 -28.43272 -27.23342 -25.46754 -24.89437 -23.13158 -22.23143 -21.28245 -20.16848 -19.95299 -19.15695 -16.34306 -16.07291 -15.45443 -15.14967 -14.93096 -14.54632 -14.35188 -14.22245 -13.77854 -13.59379 -13.08699 -12.94802 -12.83287 -12.47722 -12.38671 -12.26861 -12.25773 -11.92669 -11.74088 -11.45291 -11.17672 -11.12711 -11.11680 -11.06131 -10.88357 -10.82767 -10.65107 -10.48480 -10.41453 -10.29927 -9.81311 -9.56731 -9.13015 -8.85982 -8.31907 -8.19961 -7.76036 -5.86158 -3.86501 3.37864 3.45079 3.49514 3.82936 4.51217 4.56619 4.63528 4.81865 4.89105 5.03582 5.05756 5.14585 5.34462 5.36873 5.41630 5.46040 5.49495 5.49804 5.52571 5.56649 5.58927 5.68781 5.69949 5.74610 5.78528 5.83346 5.88546 5.93887 5.98209 6.07859 6.14966 6.19060 6.21038 6.29913 6.33079 6.48434 6.51314 6.61246 6.76711 6.97872 7.08707 7.12550 7.39204 7.63350 7.88051 7.94259 8.12151 8.26420 8.61789 9.22597 9.75920 11.25005 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.003451 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.729092 B = 8111.880316 C = 9220.627425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.147 4.147 4 C 0.059 3.941 5 N -0.535 5.535 6 C 0.056 3.944 7 C -0.103 4.103 8 C 0.092 3.908 9 N -0.667 5.667 10 C 0.084 3.916 11 H 0.061 0.939 12 C -0.173 4.173 13 C -0.097 4.097 14 C 0.030 3.970 15 C -0.515 4.515 16 H 0.051 0.949 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.144 4.144 24 C 0.062 3.938 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.333 0.667 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.003 0.997 46 H 0.031 0.969 47 H 0.257 0.743 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.030 0.970 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 17.620 6.458 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.260 5.260 6 C -0.072 4.072 7 C -0.141 4.141 8 C -0.018 4.018 9 N -0.296 5.296 10 C -0.025 4.025 11 H 0.079 0.921 12 C -0.232 4.232 13 C -0.136 4.136 14 C -0.007 4.007 15 C -0.553 4.553 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.183 4.183 24 C -0.067 4.067 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.151 0.849 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.210 17.425 5.710 20.988 hybrid contribution 0.802 -0.481 0.675 1.153 sum -9.408 16.944 6.385 20.405 Atomic orbital electron populations 1.21715 0.94667 1.02678 1.00420 1.21097 0.96714 0.95113 0.98178 1.21830 1.00803 0.96207 1.01671 1.22157 0.97862 0.88524 0.98365 1.61918 1.53874 1.01570 1.08636 1.22165 0.94017 0.94784 0.96253 1.21543 1.02250 0.92897 0.97418 1.21696 0.97893 0.87732 0.94516 1.60527 1.11176 1.08062 1.49829 1.21788 0.95446 0.95704 0.89590 0.92085 1.22477 0.99933 1.00889 0.99874 1.21643 1.00132 0.93101 0.98697 1.18983 0.91089 0.96514 0.94108 1.21393 1.15284 0.94324 1.24314 0.93085 1.24997 0.96744 0.95894 0.96869 1.69985 1.23124 1.25751 1.34722 0.86633 0.78337 0.84445 0.79140 1.19889 1.21133 1.21233 1.22422 1.00847 0.94919 1.00162 1.21999 0.99172 0.95520 0.89994 0.93537 0.93621 0.91215 0.91088 0.92914 0.92591 0.92868 0.91327 0.94841 0.94920 0.90739 0.90107 0.91500 0.90897 0.84868 0.92574 0.92348 0.93697 0.93317 0.93953 0.97854 0.95018 0.93381 0.91223 0.91959 0.95140 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.13 37.16 0.34 -0.89 16 2 C -0.09 -0.83 2.98 -90.61 -0.27 -1.10 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C 0.06 0.58 4.40 -3.82 -0.02 0.56 16 5 N -0.54 -6.02 3.97 -234.66 -0.93 -6.95 16 6 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 7 C -0.10 -1.49 5.71 -26.65 -0.15 -1.64 16 8 C 0.09 1.35 2.48 -67.59 -0.17 1.18 16 9 N -0.67 -10.77 5.59 -99.61 -0.56 -11.32 16 10 C 0.08 1.42 2.69 -67.72 -0.18 1.24 16 11 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 12 C -0.17 -2.34 9.09 37.16 0.34 -2.01 16 13 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 15 C -0.51 -15.08 9.11 -34.44 -0.31 -15.40 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 C -0.14 -1.70 5.37 -26.64 -0.14 -1.84 16 24 C 0.06 0.68 5.42 -3.83 -0.02 0.66 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 28 H 0.07 0.70 6.71 -51.93 -0.35 0.35 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 33 H 0.03 0.34 7.99 -51.93 -0.42 -0.08 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.89 6.66 -51.93 -0.35 0.55 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.22 7.33 -51.92 -0.38 0.84 16 39 H 0.33 4.79 7.82 -39.29 -0.31 4.49 16 40 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.53 6.94 -51.93 -0.36 0.17 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 46 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 49 H 0.06 0.72 6.94 -51.93 -0.36 0.36 16 50 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.68 7.93 -51.93 -0.41 0.26 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -30.19 386.45 -10.96 -41.15 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -10.38 Total: 0.20 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.63 Total: -19.32 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.75 Total: -45.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.19 -10.96 -41.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.356 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds