Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47157 * 120.00149 * 2 1 3 5 5 N 1.46897 * 109.47144 * 63.82178 * 4 2 1 6 6 C 1.46852 * 110.99965 * 75.80304 * 5 4 2 7 7 C 1.53033 * 109.52403 * 185.83979 * 6 5 4 8 8 C 1.53113 * 109.27928 * 300.81939 * 7 6 5 9 9 N 1.46904 * 109.52419 * 177.55953 * 8 7 6 10 10 C 1.46897 * 111.00136 * 155.00081 * 9 8 7 11 11 H 1.09003 * 109.47583 * 34.99850 * 10 9 8 12 12 C 1.53005 * 109.47062 * 275.00395 * 10 9 8 13 13 C 1.52998 * 109.47485 * 154.99753 * 10 9 8 14 14 C 1.52995 * 109.47204 * 295.00118 * 13 10 9 15 15 C 1.50707 * 109.46984 * 179.97438 * 14 13 10 16 16 H 1.07994 * 119.99689 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99636 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00499 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47570 * 89.99826 * 19 17 15 21 21 H 1.48502 * 109.47369 * 210.00077 * 19 17 15 22 22 H 1.48502 * 109.47241 * 329.99574 * 19 17 15 23 23 C 1.53121 * 109.16212 * 57.65236 * 8 7 6 24 24 C 1.46849 * 111.00055 * 200.00817 * 5 4 2 25 25 H 1.09004 * 109.46617 * 294.87544 * 1 2 3 26 26 H 1.08999 * 109.46942 * 54.87160 * 1 2 3 27 27 H 1.08997 * 109.47144 * 174.87582 * 1 2 3 28 28 H 1.08997 * 109.47231 * 240.00395 * 2 1 3 29 29 H 1.09000 * 109.47028 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47412 * 300.00202 * 3 2 1 31 31 H 1.09006 * 109.46799 * 60.00403 * 3 2 1 32 32 H 1.09003 * 109.47266 * 303.82361 * 4 2 1 33 33 H 1.09003 * 109.47016 * 183.82129 * 4 2 1 34 34 H 1.08992 * 109.46460 * 65.82262 * 6 5 4 35 35 H 1.09003 * 109.45356 * 305.85045 * 6 5 4 36 36 H 1.08998 * 109.50601 * 180.87576 * 7 6 5 37 37 H 1.09005 * 109.50464 * 60.76087 * 7 6 5 38 38 H 1.09001 * 109.52534 * 297.68532 * 8 7 6 39 39 H 1.00899 * 110.99699 * 31.04546 * 9 8 7 40 40 H 1.08990 * 109.47650 * 59.99698 * 12 10 9 41 41 H 1.09001 * 109.47363 * 180.02562 * 12 10 9 42 42 H 1.09006 * 109.46818 * 299.99730 * 12 10 9 43 43 H 1.09005 * 109.46853 * 55.00463 * 13 10 9 44 44 H 1.09005 * 109.47476 * 174.99443 * 13 10 9 45 45 H 1.08994 * 109.47180 * 299.99636 * 14 13 10 46 46 H 1.09001 * 109.46992 * 59.99895 * 14 13 10 47 47 H 0.96995 * 120.00334 * 179.97438 * 18 17 15 48 48 H 1.09003 * 109.50081 * 62.29418 * 23 8 7 49 49 H 1.08995 * 109.50423 * 182.40411 * 23 8 7 50 50 H 1.08994 * 109.46237 * 294.17631 * 24 5 4 51 51 H 1.08994 * 109.45829 * 54.14998 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6272 -2.1303 1.2039 6 6 2.4516 -2.8900 0.2553 7 6 1.9027 -4.3126 0.1258 8 6 1.9193 -4.9879 1.4999 9 7 1.3393 -6.3333 1.3928 10 6 1.8450 -7.2109 2.4568 11 1 1.9910 -6.6304 3.3678 12 6 3.1786 -7.8225 2.0227 13 6 0.8333 -8.3279 2.7206 14 6 -0.4596 -7.7249 3.2735 15 6 -1.4563 -8.8252 3.5327 16 1 -1.1940 -9.8517 3.3235 17 6 -2.7034 -8.5211 4.0358 18 7 -3.0231 -7.2710 4.2901 19 14 -3.9386 -9.8849 4.3578 20 1 -3.7738 -10.3845 5.7465 21 1 -5.3156 -9.3574 4.1817 22 1 -3.7086 -10.9971 3.4011 23 6 1.0935 -4.1513 2.4811 24 6 1.6659 -2.7333 2.5423 25 1 -0.3633 0.4323 0.9324 26 1 -0.3633 0.5913 -0.8405 27 1 -0.3633 -1.0235 -0.0918 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6218 -0.2486 2.1379 33 1 3.1279 -0.6623 1.2841 34 1 3.4790 -2.9287 0.6169 35 1 2.4276 -2.4014 -0.7188 36 1 2.5240 -4.8808 -0.5664 37 1 0.8798 -4.2753 -0.2490 38 1 2.9464 -5.0615 1.8573 39 1 1.5145 -6.7311 0.4822 40 1 3.8993 -7.0268 1.8349 41 1 3.5536 -8.4740 2.8120 42 1 3.0326 -8.4030 1.1117 43 1 0.6203 -8.8525 1.7891 44 1 1.2466 -9.0288 3.4459 45 1 -0.2466 -7.2004 4.2048 46 1 -0.8729 -7.0242 2.5481 47 1 -3.9005 -7.0570 4.6437 48 1 0.0579 -4.1115 2.1434 49 1 1.1367 -4.6042 3.4715 50 1 2.6970 -2.7728 2.8932 51 1 1.0714 -2.1311 3.2292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -32.038261 kcal Electronic energy + Delta-G solvation = -23283.836397 eV Core-core repulsion = 20216.446093 eV Total energy + Delta-G solvation = -3067.390304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.41565 -37.29751 -35.44894 -33.29973 -32.19247 -30.74580 -29.74795 -28.35327 -27.19086 -25.49580 -24.90236 -23.25839 -22.30066 -21.15870 -19.98759 -19.65646 -19.37568 -16.28332 -16.05642 -15.49859 -15.27108 -14.87161 -14.60251 -14.32066 -14.21452 -13.85471 -13.49315 -13.22921 -12.90307 -12.75136 -12.46771 -12.39229 -12.29523 -12.15678 -12.08917 -11.62836 -11.48904 -11.23764 -11.14460 -11.04049 -11.00532 -10.82808 -10.73867 -10.64041 -10.49020 -10.36005 -10.10458 -9.99434 -9.54788 -9.14986 -8.83634 -8.28794 -8.18156 -7.78849 -5.83471 -3.84335 3.40066 3.46164 3.49659 3.83741 4.47296 4.58155 4.62648 4.82886 4.89423 4.98392 5.10186 5.24406 5.27701 5.36190 5.44787 5.47206 5.48253 5.51629 5.51816 5.56835 5.63038 5.66636 5.67597 5.71689 5.78858 5.83594 5.88749 5.92249 6.00096 6.10064 6.16070 6.20703 6.26282 6.31527 6.38617 6.41860 6.49311 6.74656 6.80500 6.95362 7.11431 7.14173 7.38254 7.63251 7.89721 7.92128 8.14219 8.30194 8.63349 9.24774 9.77897 11.27434 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.003502 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.204042 B = 7994.386551 C = 9100.903465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.147 4.147 4 C 0.059 3.941 5 N -0.533 5.533 6 C 0.062 3.938 7 C -0.118 4.118 8 C 0.092 3.908 9 N -0.666 5.666 10 C 0.085 3.915 11 H 0.070 0.930 12 C -0.180 4.180 13 C -0.098 4.098 14 C 0.032 3.968 15 C -0.518 4.518 16 H 0.050 0.950 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.886 3.114 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.104 4.104 24 C 0.059 3.941 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.334 0.666 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.005 0.995 46 H 0.034 0.966 47 H 0.257 0.743 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.025 0.975 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.896 14.067 -8.686 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.257 5.257 6 C -0.067 4.067 7 C -0.156 4.156 8 C -0.019 4.019 9 N -0.296 5.296 10 C -0.025 4.025 11 H 0.088 0.912 12 C -0.239 4.239 13 C -0.136 4.136 14 C -0.005 4.005 15 C -0.556 4.556 16 H 0.068 0.932 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.714 3.286 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.142 4.142 24 C -0.069 4.069 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.152 0.848 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.024 0.976 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.043 0.957 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.688 14.308 -8.435 20.901 hybrid contribution 1.081 -0.895 0.265 1.429 sum 13.769 13.413 -8.170 20.886 Atomic orbital electron populations 1.21702 0.94337 1.02692 1.00707 1.21095 0.96990 0.95010 0.97904 1.21833 1.00554 0.96305 1.01815 1.22177 0.97352 0.88723 0.98602 1.61874 1.53949 1.01387 1.08539 1.22044 0.93869 0.94280 0.96500 1.21762 1.02729 0.94296 0.96802 1.21490 0.95284 0.89848 0.95231 1.60529 1.61673 1.01447 1.05976 1.21752 0.92021 0.94670 0.94066 0.91176 1.22542 0.99011 1.00621 1.01710 1.21625 0.97099 0.95254 0.99642 1.18973 0.89975 0.95813 0.95776 1.21358 0.98622 0.93689 1.41978 0.93216 1.24988 0.98235 0.95130 0.96058 1.69975 1.21025 1.17032 1.45297 0.86705 0.80957 0.82537 0.78409 1.20912 1.21346 1.20063 1.21578 1.01220 0.91864 0.99532 1.22135 0.98782 0.96572 0.89410 0.93184 0.93717 0.91247 0.91444 0.93105 0.92609 0.92711 0.91000 0.95159 0.95527 0.90887 0.92171 0.89943 0.95116 0.84792 0.93938 0.92397 0.92842 0.93562 0.93744 0.97619 0.94803 0.93299 0.89786 0.91345 0.95666 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 2 C -0.09 -0.82 2.97 -90.62 -0.27 -1.09 16 3 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 4 C 0.06 0.59 4.41 -3.83 -0.02 0.57 16 5 N -0.53 -6.22 4.08 -234.68 -0.96 -7.17 16 6 C 0.06 0.67 5.29 -3.83 -0.02 0.65 16 7 C -0.12 -1.42 5.36 -26.66 -0.14 -1.56 16 8 C 0.09 1.29 2.37 -67.59 -0.16 1.13 16 9 N -0.67 -10.82 5.51 -99.61 -0.55 -11.37 16 10 C 0.08 1.44 2.40 -67.71 -0.16 1.28 16 11 H 0.07 1.27 7.16 -51.93 -0.37 0.89 16 12 C -0.18 -2.49 9.15 37.16 0.34 -2.15 16 13 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 14 C 0.03 0.84 4.86 -27.88 -0.14 0.70 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.10 -1.59 5.58 -26.65 -0.15 -1.74 16 24 C 0.06 0.75 5.43 -3.83 -0.02 0.73 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.80 7.87 -51.93 -0.41 0.40 16 28 H 0.07 0.62 6.73 -51.93 -0.35 0.27 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.03 0.29 8.00 -51.93 -0.42 -0.13 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.72 6.66 -51.93 -0.35 0.38 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.43 7.12 -51.93 -0.37 0.06 16 39 H 0.33 4.96 8.10 -39.29 -0.32 4.64 16 40 H 0.04 0.54 7.43 -51.93 -0.39 0.15 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.07 1.15 7.49 -51.93 -0.39 0.76 16 50 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -30.30 387.34 -11.01 -41.31 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -10.46 Total: 0.30 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -0.60 Total: -19.34 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.77 Total: -45.41 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.30 -11.01 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.276 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds