Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 N 1.46899 * 109.47240 * 120.00485 * 2 1 3 5 5 C 1.46845 * 111.00173 * 56.04197 * 4 2 1 6 6 C 1.53038 * 109.52514 * 185.84207 * 5 4 2 7 7 C 1.53116 * 109.27612 * 300.82336 * 6 5 4 8 8 H 1.08997 * 109.52063 * 297.68185 * 7 6 5 9 9 N 1.46900 * 109.52072 * 177.55782 * 7 6 5 10 10 C 1.46903 * 111.00171 * 152.81248 * 9 7 6 11 11 H 1.08998 * 109.46927 * 35.47437 * 10 9 7 12 12 C 1.52996 * 109.47277 * 275.47306 * 10 9 7 13 13 C 1.53002 * 109.47374 * 155.46869 * 10 9 7 14 14 C 1.53002 * 109.47025 * 295.00718 * 13 10 9 15 15 C 1.50706 * 109.46836 * 179.97438 * 14 13 10 16 16 H 1.07989 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99635 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99571 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47257 * 60.00821 * 19 17 15 21 21 H 1.48506 * 109.46940 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47517 * 300.00289 * 19 17 15 23 23 C 1.53119 * 109.16376 * 57.65318 * 7 6 5 24 24 H 1.08996 * 109.49873 * 182.40267 * 23 7 6 25 25 C 1.53007 * 109.50194 * 62.28768 * 23 7 6 26 26 C 1.46846 * 111.00463 * 180.25697 * 4 2 1 27 27 H 1.08999 * 109.46837 * 299.99762 * 1 2 3 28 28 H 1.09001 * 109.46640 * 59.99487 * 1 2 3 29 29 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47053 * 239.99758 * 2 1 3 31 31 H 1.08998 * 109.46883 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47301 * 300.00234 * 3 2 1 33 33 H 1.08999 * 109.46984 * 60.00328 * 3 2 1 34 34 H 1.08997 * 109.46148 * 65.82439 * 5 4 2 35 35 H 1.09002 * 109.45106 * 305.85300 * 5 4 2 36 36 H 1.08994 * 109.50571 * 180.87694 * 6 5 4 37 37 H 1.09005 * 109.50235 * 60.76453 * 6 5 4 38 38 H 1.00908 * 111.00171 * 28.86463 * 9 7 6 39 39 H 1.09001 * 109.46987 * 296.07448 * 12 10 9 40 40 H 1.08995 * 109.47006 * 56.07160 * 12 10 9 41 41 H 1.09001 * 109.47041 * 176.07672 * 12 10 9 42 42 H 1.09000 * 109.46873 * 55.00249 * 13 10 9 43 43 H 1.08993 * 109.47337 * 175.00486 * 13 10 9 44 44 H 1.09000 * 109.46912 * 299.99507 * 14 13 10 45 45 H 1.09001 * 109.47428 * 59.99460 * 14 13 10 46 46 H 0.97005 * 119.99701 * 179.97438 * 18 17 15 47 47 H 1.09000 * 109.47177 * 59.99536 * 25 23 7 48 48 H 1.08998 * 109.46988 * 180.02562 * 25 23 7 49 49 H 1.09001 * 109.46787 * 299.99925 * 25 23 7 50 50 H 1.09000 * 109.45592 * 294.17582 * 26 4 2 51 51 H 1.09003 * 109.46261 * 54.14829 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4732 -2.0531 1.2815 6 6 1.8854 -2.6905 2.6103 7 6 3.4134 -2.7279 2.7005 8 1 3.8105 -3.3501 1.8985 9 7 3.8150 -3.2853 3.9990 10 6 5.1329 -3.9283 3.9110 11 1 5.7637 -3.3707 3.2187 12 6 4.9676 -5.3635 3.4075 13 6 5.7856 -3.9452 5.2947 14 6 6.0647 -2.5097 5.7446 15 6 6.7070 -2.5264 7.1078 16 1 6.8975 -3.4667 7.6035 17 6 7.0524 -1.3410 7.7216 18 7 6.8208 -0.1959 7.1177 19 14 7.8478 -1.3617 9.4116 20 1 9.1241 -2.1182 9.3488 21 1 8.1188 0.0316 9.8482 22 1 6.9325 -2.0147 10.3817 23 6 3.9600 -1.3041 2.5638 24 1 5.0495 -1.3291 2.5845 25 6 3.4458 -0.4462 3.7217 26 6 3.4877 -0.7069 1.2364 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.8608 -2.6505 0.4564 35 1 0.3857 -2.0117 1.2204 36 1 1.4927 -3.7058 2.6642 37 1 1.4864 -2.1012 3.4359 38 1 3.1207 -3.9300 4.3461 39 1 4.3952 -5.9399 4.1344 40 1 4.4401 -5.3554 2.4537 41 1 5.9497 -5.8178 3.2758 42 1 5.1146 -4.4252 6.0071 43 1 6.7226 -4.4999 5.2477 44 1 6.7357 -2.0297 5.0322 45 1 5.1276 -1.9549 5.7915 46 1 7.0635 0.6380 7.5497 47 1 3.7795 -0.8741 4.6671 48 1 3.8348 0.5673 3.6237 49 1 2.3563 -0.4206 3.6990 50 1 3.8658 -1.3107 0.4115 51 1 3.8633 0.3121 1.1427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = -19.887407 kcal Electronic energy + Delta-G solvation = -24034.072260 eV Core-core repulsion = 20967.208857 eV Total energy + Delta-G solvation = -3066.863403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.79988 -37.27451 -34.89932 -32.93219 -31.75539 -31.24126 -29.51727 -28.17107 -27.44419 -25.65049 -24.96292 -23.15283 -22.46688 -21.19538 -20.25720 -19.53744 -18.35490 -16.64785 -16.05609 -15.46034 -14.82503 -14.71484 -14.53411 -14.43269 -14.20154 -14.06323 -13.05950 -12.96715 -12.87961 -12.76365 -12.34985 -12.32477 -12.23391 -12.02002 -11.81581 -11.48900 -11.43664 -11.23851 -11.12099 -11.06914 -10.91973 -10.79556 -10.71868 -10.48039 -10.38542 -10.18263 -9.92144 -9.83430 -9.48282 -9.11940 -8.82795 -8.22435 -8.16082 -7.74899 -5.82675 -3.83386 3.41848 3.46080 3.48625 3.83686 4.50208 4.58699 4.73278 4.84901 4.93429 5.06798 5.20395 5.27679 5.36894 5.44723 5.46856 5.51801 5.52573 5.56440 5.61418 5.64129 5.64761 5.70261 5.72761 5.79042 5.86444 5.93316 6.07440 6.10035 6.14017 6.16477 6.24849 6.27173 6.32288 6.43222 6.58797 6.75398 6.78062 6.92914 6.96645 7.14048 7.19551 7.32816 7.39841 7.64707 7.90897 7.94178 8.15418 8.33086 8.64188 9.25426 9.78599 11.27941 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.004067 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.999878 B = 6882.527026 C = 7874.475747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.146 4.146 4 N -0.526 5.526 5 C 0.058 3.942 6 C -0.120 4.120 7 C 0.095 3.905 8 H 0.031 0.969 9 N -0.662 5.662 10 C 0.085 3.915 11 H 0.069 0.931 12 C -0.180 4.180 13 C -0.098 4.098 14 C 0.032 3.968 15 C -0.519 4.519 16 H 0.048 0.952 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.072 4.072 24 H 0.071 0.929 25 C -0.125 4.125 26 C 0.058 3.942 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.333 0.667 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.005 0.995 45 H 0.036 0.964 46 H 0.258 0.742 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.053 0.947 50 H 0.023 0.977 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 -2.557 -16.030 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.204 4.204 4 N -0.252 5.252 5 C -0.070 4.070 6 C -0.158 4.158 7 C -0.015 4.015 8 H 0.049 0.951 9 N -0.292 5.292 10 C -0.025 4.025 11 H 0.087 0.913 12 C -0.239 4.239 13 C -0.136 4.136 14 C -0.005 4.005 15 C -0.558 4.558 16 H 0.067 0.933 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.092 4.092 24 H 0.089 0.911 25 C -0.182 4.182 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.041 0.959 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.045 -1.505 -15.361 19.578 hybrid contribution 0.663 -1.300 -0.338 1.498 sum -11.383 -2.805 -15.699 19.593 Atomic orbital electron populations 1.21916 0.94592 1.01795 1.02116 1.21573 0.95437 0.95196 0.90983 1.21891 1.01267 0.95223 1.02015 1.61951 1.08518 1.16542 1.38144 1.22082 0.99783 0.88498 0.96678 1.21818 0.95809 0.99971 0.98227 1.21505 0.93856 0.95526 0.90624 0.95121 1.60525 1.03673 1.39834 1.25201 1.21752 0.90634 0.90888 0.99213 0.91254 1.22541 1.01700 0.99486 1.00151 1.21619 0.97503 1.01643 0.92811 1.19001 0.97218 0.89813 0.94506 1.21322 1.39371 0.91974 1.03108 0.93336 1.24972 0.96193 0.95785 0.97336 1.69968 1.48177 0.97111 1.37926 0.86785 0.79862 0.76759 0.85276 1.20530 1.21438 1.20435 1.21090 0.99733 0.94188 0.94155 0.91092 1.21591 1.00329 0.97562 0.98748 1.22249 0.86802 1.00905 0.97068 0.91607 0.92545 0.92641 0.94861 0.92407 0.92614 0.91551 0.95691 0.90504 0.92302 0.89623 0.84833 0.92820 0.93948 0.92525 0.93593 0.93830 0.97652 0.94537 0.93273 0.90297 0.94491 0.92849 0.95894 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.85 37.16 0.33 -0.93 16 2 C 0.08 0.77 2.68 -67.71 -0.18 0.59 16 3 C -0.15 -1.40 8.97 37.16 0.33 -1.07 16 4 N -0.53 -6.20 3.81 -226.70 -0.86 -7.07 16 5 C 0.06 0.64 5.14 -3.83 -0.02 0.62 16 6 C -0.12 -1.44 4.98 -26.65 -0.13 -1.57 16 7 C 0.10 1.33 2.03 -67.59 -0.14 1.19 16 8 H 0.03 0.44 7.07 -51.93 -0.37 0.07 16 9 N -0.66 -10.51 4.66 -99.61 -0.46 -10.98 16 10 C 0.08 1.43 2.40 -67.71 -0.16 1.27 16 11 H 0.07 1.25 7.33 -51.93 -0.38 0.87 16 12 C -0.18 -2.48 9.16 37.16 0.34 -2.14 16 13 C -0.10 -2.04 4.83 -26.73 -0.13 -2.17 16 14 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.88 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.07 -1.11 2.85 -90.54 -0.26 -1.36 16 24 H 0.07 1.24 7.64 -51.93 -0.40 0.84 16 25 C -0.13 -2.17 8.57 37.16 0.32 -1.85 16 26 C 0.06 0.75 4.65 -3.84 -0.02 0.73 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.45 6.22 -51.93 -0.32 0.13 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.58 6.27 -51.93 -0.33 0.25 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.76 5.91 -51.93 -0.31 0.45 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.15 6.58 -51.93 -0.34 0.80 16 38 H 0.33 4.87 8.09 -39.29 -0.32 4.55 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.53 7.38 -51.93 -0.38 0.15 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.04 1.01 6.48 -51.93 -0.34 0.68 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 1.65 6.27 -51.93 -0.33 1.33 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.05 0.87 6.01 -51.93 -0.31 0.56 16 50 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.08 1.02 6.00 -51.93 -0.31 0.71 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -29.74 374.43 -10.12 -39.86 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.89 Total: 1.65 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.26 Total: -19.79 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.59 Total: -44.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.74 -10.12 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.977 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds