Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 N 1.46899 * 109.47240 * 120.00485 * 2 1 3 5 5 C 1.46845 * 111.00173 * 56.04197 * 4 2 1 6 6 C 1.53038 * 109.52514 * 185.84207 * 5 4 2 7 7 C 1.53116 * 109.27612 * 300.82336 * 6 5 4 8 8 H 1.08997 * 109.52063 * 297.68185 * 7 6 5 9 9 N 1.46900 * 109.52072 * 177.55782 * 7 6 5 10 10 C 1.46903 * 111.00171 * 152.81248 * 9 7 6 11 11 H 1.08998 * 109.46927 * 35.47437 * 10 9 7 12 12 C 1.52996 * 109.47277 * 275.47306 * 10 9 7 13 13 C 1.53002 * 109.47374 * 155.46869 * 10 9 7 14 14 C 1.53002 * 109.47025 * 295.00718 * 13 10 9 15 15 C 1.50706 * 109.46836 * 179.97438 * 14 13 10 16 16 H 1.07989 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99635 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99909 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99571 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47257 * 60.00821 * 19 17 15 21 21 H 1.48506 * 109.46940 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47517 * 300.00289 * 19 17 15 23 23 C 1.53119 * 109.16376 * 57.65318 * 7 6 5 24 24 H 1.08996 * 109.49873 * 182.40267 * 23 7 6 25 25 C 1.53007 * 109.50194 * 62.28768 * 23 7 6 26 26 C 1.46846 * 111.00463 * 180.25697 * 4 2 1 27 27 H 1.08999 * 109.46837 * 299.99762 * 1 2 3 28 28 H 1.09001 * 109.46640 * 59.99487 * 1 2 3 29 29 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47053 * 239.99758 * 2 1 3 31 31 H 1.08998 * 109.46883 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47301 * 300.00234 * 3 2 1 33 33 H 1.08999 * 109.46984 * 60.00328 * 3 2 1 34 34 H 1.08997 * 109.46148 * 65.82439 * 5 4 2 35 35 H 1.09002 * 109.45106 * 305.85300 * 5 4 2 36 36 H 1.08994 * 109.50571 * 180.87694 * 6 5 4 37 37 H 1.09005 * 109.50235 * 60.76453 * 6 5 4 38 38 H 1.00908 * 111.00171 * 28.86463 * 9 7 6 39 39 H 1.09001 * 109.46987 * 296.07448 * 12 10 9 40 40 H 1.08995 * 109.47006 * 56.07160 * 12 10 9 41 41 H 1.09001 * 109.47041 * 176.07672 * 12 10 9 42 42 H 1.09000 * 109.46873 * 55.00249 * 13 10 9 43 43 H 1.08993 * 109.47337 * 175.00486 * 13 10 9 44 44 H 1.09000 * 109.46912 * 299.99507 * 14 13 10 45 45 H 1.09001 * 109.47428 * 59.99460 * 14 13 10 46 46 H 0.97005 * 119.99701 * 179.97438 * 18 17 15 47 47 H 1.09000 * 109.47177 * 59.99536 * 25 23 7 48 48 H 1.08998 * 109.46988 * 180.02562 * 25 23 7 49 49 H 1.09001 * 109.46787 * 299.99925 * 25 23 7 50 50 H 1.09000 * 109.45592 * 294.17582 * 26 4 2 51 51 H 1.09003 * 109.46261 * 54.14829 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4732 -2.0531 1.2815 6 6 1.8854 -2.6905 2.6103 7 6 3.4134 -2.7279 2.7005 8 1 3.8105 -3.3501 1.8985 9 7 3.8150 -3.2853 3.9990 10 6 5.1329 -3.9283 3.9110 11 1 5.7637 -3.3707 3.2187 12 6 4.9676 -5.3635 3.4075 13 6 5.7856 -3.9452 5.2947 14 6 6.0647 -2.5097 5.7446 15 6 6.7070 -2.5264 7.1078 16 1 6.8975 -3.4667 7.6035 17 6 7.0524 -1.3410 7.7216 18 7 6.8208 -0.1959 7.1177 19 14 7.8478 -1.3617 9.4116 20 1 9.1241 -2.1182 9.3488 21 1 8.1188 0.0316 9.8482 22 1 6.9325 -2.0147 10.3817 23 6 3.9600 -1.3041 2.5638 24 1 5.0495 -1.3291 2.5845 25 6 3.4458 -0.4462 3.7217 26 6 3.4877 -0.7069 1.2364 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.8608 -2.6505 0.4564 35 1 0.3857 -2.0117 1.2204 36 1 1.4927 -3.7058 2.6642 37 1 1.4864 -2.1012 3.4359 38 1 3.1207 -3.9300 4.3461 39 1 4.3952 -5.9399 4.1344 40 1 4.4401 -5.3554 2.4537 41 1 5.9497 -5.8178 3.2758 42 1 5.1146 -4.4252 6.0071 43 1 6.7226 -4.4999 5.2477 44 1 6.7357 -2.0297 5.0322 45 1 5.1276 -1.9549 5.7915 46 1 7.0635 0.6380 7.5497 47 1 3.7795 -0.8741 4.6671 48 1 3.8348 0.5673 3.6237 49 1 2.3563 -0.4206 3.6990 50 1 3.8658 -1.3107 0.4115 51 1 3.8633 0.3121 1.1427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -37.251506 kcal Electronic energy + Delta-G solvation = -24034.825224 eV Core-core repulsion = 20967.208857 eV Total energy + Delta-G solvation = -3067.616367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86322 -38.48230 -36.18839 -34.92971 -32.91479 -32.55723 -31.08392 -29.37144 -28.29887 -27.03645 -26.72632 -24.27832 -23.56352 -22.97804 -21.21870 -20.97497 -19.52403 -18.32216 -17.61675 -16.65802 -16.49149 -15.94130 -15.67645 -15.65633 -15.48196 -15.09275 -14.52315 -14.31016 -14.14678 -13.91863 -13.77115 -13.70350 -13.19149 -13.13650 -12.98972 -12.89554 -12.81726 -12.72079 -12.46238 -12.34496 -12.24045 -12.09288 -11.96726 -11.84628 -11.74365 -11.60507 -11.48121 -11.20933 -11.13120 -10.89371 -10.84380 -10.42634 -9.14251 -9.01861 -8.09573 -6.19774 1.40124 1.43356 1.50890 2.45565 2.94094 3.21983 3.29883 3.78991 3.89038 4.07526 4.09740 4.14980 4.22245 4.31995 4.36929 4.44164 4.46276 4.48177 4.54771 4.66955 4.73406 4.78139 4.80145 4.84894 4.88404 4.93674 4.98995 5.01624 5.01926 5.05650 5.09537 5.12169 5.16848 5.30663 5.32427 5.36894 5.39607 5.47551 5.51331 5.55903 5.62105 5.74556 5.94999 6.13670 6.22570 6.30999 6.38437 6.40114 6.75354 7.00295 7.47534 9.00746 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.004067 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.999878 B = 6882.527026 C = 7874.475747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.145 4.145 4 N -0.537 5.537 5 C 0.060 3.940 6 C -0.113 4.113 7 C 0.102 3.898 8 H 0.038 0.962 9 N -0.680 5.680 10 C 0.093 3.907 11 H 0.051 0.949 12 C -0.167 4.167 13 C -0.087 4.087 14 C 0.043 3.957 15 C -0.545 4.545 16 H 0.052 0.948 17 C 0.001 3.999 18 N -0.928 5.928 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.268 1.268 23 C -0.071 4.071 24 H 0.039 0.961 25 C -0.109 4.109 26 C 0.068 3.932 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.343 0.657 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.043 0.957 44 H -0.029 1.029 45 H 0.012 0.988 46 H 0.259 0.741 47 H 0.036 0.964 48 H 0.022 0.978 49 H 0.064 0.936 50 H 0.030 0.970 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 -4.010 -16.869 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.203 4.203 4 N -0.263 5.263 5 C -0.068 4.068 6 C -0.151 4.151 7 C -0.008 4.008 8 H 0.056 0.944 9 N -0.311 5.311 10 C -0.016 4.016 11 H 0.070 0.930 12 C -0.226 4.226 13 C -0.126 4.126 14 C 0.006 3.994 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.091 4.091 24 H 0.058 0.942 25 C -0.166 4.166 26 C -0.060 4.060 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.062 0.938 44 H -0.011 1.011 45 H 0.030 0.970 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.350 -2.977 -16.206 21.207 hybrid contribution 1.069 -0.783 -0.076 1.328 sum -12.280 -3.760 -16.282 20.738 Atomic orbital electron populations 1.21880 0.93165 1.02374 1.02483 1.21663 0.96509 0.94943 0.90196 1.21884 1.00706 0.95315 1.02356 1.61938 1.07353 1.17461 1.39563 1.22117 1.00786 0.87886 0.96014 1.21763 0.93698 1.01186 0.98428 1.21456 0.95500 0.94116 0.89744 0.94387 1.60378 1.03523 1.40378 1.26848 1.21484 0.90688 0.93229 0.96248 0.93022 1.22377 1.02456 0.96628 1.01113 1.21446 0.98034 0.97733 0.95342 1.18799 0.94855 0.92744 0.92974 1.21792 1.39781 0.92341 1.04383 0.92946 1.25902 0.96680 0.95308 1.01729 1.70124 1.49075 0.97791 1.39823 0.85631 0.79137 0.77071 0.79949 1.19418 1.20926 1.19345 1.21026 0.97885 0.95389 0.94793 0.94249 1.21390 1.00812 0.96803 0.97638 1.22040 0.88073 1.00497 0.95423 0.92454 0.90988 0.91926 0.94413 0.93296 0.90783 0.92682 0.94959 0.88713 0.90093 0.91194 0.83776 0.91803 0.92097 0.92093 0.93417 0.93799 1.01097 0.96972 0.93182 0.94448 0.95863 0.91663 0.95193 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.85 71.98 0.64 -1.43 16 2 C 0.07 1.36 2.68 44.92 0.12 1.48 16 3 C -0.15 -2.62 8.97 71.98 0.65 -1.98 16 4 N -0.54 -11.97 3.81 -871.13 -3.32 -15.29 16 5 C 0.06 1.17 5.14 86.33 0.44 1.61 16 6 C -0.11 -2.50 4.98 30.65 0.15 -2.35 16 7 C 0.10 2.80 2.03 44.99 0.09 2.89 16 8 H 0.04 1.02 7.07 -2.39 -0.02 1.00 16 9 N -0.68 -21.73 4.66 -469.07 -2.19 -23.92 16 10 C 0.09 3.17 2.40 44.91 0.11 3.28 16 11 H 0.05 1.93 7.33 -2.39 -0.02 1.91 16 12 C -0.17 -4.26 9.16 71.98 0.66 -3.60 16 13 C -0.09 -3.72 4.83 30.60 0.15 -3.57 16 14 C 0.04 2.38 4.86 29.85 0.15 2.53 16 15 C -0.54 -32.45 9.11 25.60 0.23 -32.22 16 16 H 0.05 3.00 7.74 -2.92 -0.02 2.98 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -58.64 13.29 21.45 0.28 -58.36 16 19 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C -0.07 -2.28 2.85 -10.74 -0.03 -2.31 16 24 H 0.04 1.48 7.64 -2.39 -0.02 1.46 16 25 C -0.11 -4.03 8.57 71.98 0.62 -3.42 16 26 C 0.07 1.76 4.65 86.32 0.40 2.16 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.83 6.22 -2.39 -0.01 0.81 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.96 6.27 -2.39 -0.01 0.94 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 1.55 5.91 -2.39 -0.01 1.54 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.80 6.58 -2.38 -0.02 1.78 16 38 H 0.34 9.69 8.09 -89.69 -0.73 8.96 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.35 7.38 -2.39 -0.02 1.33 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 45 H 0.01 0.71 6.48 -2.39 -0.02 0.70 16 46 H 0.26 15.51 8.31 -92.70 -0.77 14.73 16 47 H 0.04 1.68 6.27 -2.39 -0.01 1.66 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 2.21 6.01 -2.39 -0.01 2.19 16 50 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 1.97 6.00 -2.39 -0.01 1.96 16 Total: -1.00 -66.66 374.43 1.78 -64.87 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.14 Total: 20.98 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 4.83 Total: -36.36 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -5.22 Total: -97.57 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -66.66 1.78 -64.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.623 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds