Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 N 1.46901 * 109.47159 * 119.99920 * 2 1 3 5 5 C 1.46847 * 111.00026 * 298.95598 * 4 2 1 6 6 C 1.53033 * 109.52629 * 174.16218 * 5 4 2 7 7 C 1.53120 * 109.27800 * 59.17219 * 6 5 4 8 8 H 1.08997 * 109.52305 * 62.32034 * 7 6 5 9 9 N 1.46901 * 109.52048 * 182.44450 * 7 6 5 10 10 C 1.46905 * 110.99870 * 275.00111 * 9 7 6 11 11 H 1.09004 * 109.46962 * 34.99990 * 10 9 7 12 12 C 1.52999 * 109.47094 * 274.99984 * 10 9 7 13 13 C 1.53000 * 109.47134 * 155.00327 * 10 9 7 14 14 C 1.53006 * 109.46726 * 295.00113 * 13 10 9 15 15 C 1.50703 * 109.46644 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00525 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99602 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99986 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47038 * 59.99853 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46865 * 299.99883 * 19 17 15 23 23 C 1.53117 * 109.16304 * 302.34876 * 7 6 5 24 24 H 1.09002 * 109.50331 * 297.71085 * 23 7 6 25 25 C 1.53000 * 109.50437 * 177.59466 * 23 7 6 26 26 C 1.46842 * 111.00181 * 174.74432 * 4 2 1 27 27 H 1.08998 * 109.47209 * 300.00216 * 1 2 3 28 28 H 1.08998 * 109.47201 * 60.00095 * 1 2 3 29 29 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46488 * 239.99749 * 2 1 3 31 31 H 1.09003 * 109.47115 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46691 * 299.99583 * 3 2 1 33 33 H 1.08998 * 109.47266 * 59.99819 * 3 2 1 34 34 H 1.09002 * 109.46677 * 54.13960 * 5 4 2 35 35 H 1.09006 * 109.44869 * 294.17292 * 5 4 2 36 36 H 1.09002 * 109.49995 * 299.23563 * 6 5 4 37 37 H 1.08993 * 109.53631 * 179.13925 * 6 5 4 38 38 H 1.00901 * 111.00067 * 38.95287 * 9 7 6 39 39 H 1.08999 * 109.47123 * 179.97438 * 12 10 9 40 40 H 1.08997 * 109.47624 * 300.00377 * 12 10 9 41 41 H 1.09006 * 109.47163 * 60.00429 * 12 10 9 42 42 H 1.08994 * 109.47174 * 54.99833 * 13 10 9 43 43 H 1.08993 * 109.47332 * 175.00515 * 13 10 9 44 44 H 1.09003 * 109.47097 * 299.99468 * 14 13 10 45 45 H 1.08997 * 109.47291 * 60.00410 * 14 13 10 46 46 H 0.96998 * 119.99555 * 179.97438 * 18 17 15 47 47 H 1.09004 * 109.47018 * 59.99594 * 25 23 7 48 48 H 1.08993 * 109.47305 * 179.97438 * 25 23 7 49 49 H 1.09006 * 109.46831 * 300.00323 * 25 23 7 50 50 H 1.09001 * 109.45881 * 305.85251 * 26 4 2 51 51 H 1.08996 * 109.46358 * 65.83255 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5694 -0.0123 2.4205 6 6 1.9727 -0.8379 3.6443 7 6 3.4947 -1.0048 3.6622 8 1 3.9673 -0.0269 3.7533 9 7 3.8829 -1.8457 4.8025 10 6 4.0200 -1.0436 6.0256 11 1 3.2773 -0.2458 6.0220 12 6 5.4224 -0.4346 6.0815 13 6 3.8029 -1.9371 7.2484 14 6 2.3602 -2.4466 7.2581 15 6 2.1462 -3.3262 8.4629 16 1 2.9580 -3.5043 9.1525 17 6 0.9139 -3.9035 8.6849 18 7 -0.0748 -3.6861 7.8454 19 14 0.6484 -4.9932 10.1787 20 1 0.9058 -4.2106 11.4142 21 1 -0.7517 -5.4878 10.1880 22 1 1.5804 -6.1479 10.1209 23 6 3.9426 -1.6717 2.3587 24 1 3.5006 -2.6655 2.2878 25 6 5.4681 -1.7879 2.3423 26 6 3.4822 -0.8218 1.1723 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 0.4850 0.0963 2.3970 35 1 2.0318 0.9731 2.4787 36 1 1.4997 -1.8186 3.5936 37 1 1.6520 -0.3257 4.5513 38 1 3.2256 -2.5995 4.9362 39 1 5.5240 0.1609 6.9887 40 1 6.1652 -1.2323 6.0850 41 1 5.5771 0.2020 5.2103 42 1 4.4872 -2.7844 7.2054 43 1 3.9916 -1.3634 8.1557 44 1 1.6759 -1.5992 7.3012 45 1 2.1715 -3.0204 6.3508 46 1 -0.9416 -4.0926 8.0013 47 1 5.7957 -2.3903 3.1896 48 1 5.7863 -2.2630 1.4145 49 1 5.9090 -0.7934 2.4116 50 1 3.7871 -1.3013 0.2421 51 1 3.9355 0.1673 1.2366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -27.759610 kcal Electronic energy + Delta-G solvation = -23884.848081 eV Core-core repulsion = 20817.643313 eV Total energy + Delta-G solvation = -3067.204768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82552 -37.35953 -35.03481 -32.96050 -31.99710 -31.16974 -29.42693 -28.40679 -27.39242 -25.85050 -25.07147 -23.27893 -22.29189 -21.28411 -20.00662 -19.55028 -19.09114 -16.32965 -16.20685 -15.43355 -15.14510 -14.87085 -14.57868 -14.45905 -14.12719 -13.65591 -13.53317 -13.11421 -12.81228 -12.68859 -12.48915 -12.31975 -12.18134 -12.01519 -11.78652 -11.68804 -11.56146 -11.46114 -11.24605 -11.14455 -11.06059 -10.89009 -10.74338 -10.53482 -10.48317 -10.36121 -10.28049 -9.94247 -9.68916 -9.23519 -9.00069 -8.32797 -8.25365 -7.81594 -5.98217 -4.00163 3.34765 3.39095 3.41756 3.85608 4.47772 4.56702 4.70168 4.86326 4.92571 5.07411 5.14963 5.20075 5.32605 5.37631 5.41254 5.45125 5.53353 5.56690 5.61247 5.67045 5.69702 5.73079 5.76938 5.81229 5.85034 5.86908 5.94820 6.04092 6.08211 6.13966 6.20769 6.22185 6.31615 6.41147 6.45495 6.52792 6.53874 6.58648 6.68802 6.95824 7.12317 7.14764 7.16571 7.62235 7.65725 7.84542 7.98084 8.04584 8.45247 9.06308 9.63826 11.12798 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.004031 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.720160 B = 6944.793056 C = 7960.965117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.531 5.531 5 C 0.057 3.943 6 C -0.147 4.147 7 C 0.096 3.904 8 H 0.066 0.934 9 N -0.679 5.679 10 C 0.083 3.917 11 H 0.036 0.964 12 C -0.135 4.135 13 C -0.114 4.114 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.075 4.075 24 H 0.078 0.922 25 C -0.134 4.134 26 C 0.062 3.938 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.353 0.647 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.011 0.989 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 9.312 -16.018 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.246 4.246 4 N -0.255 5.255 5 C -0.071 4.071 6 C -0.187 4.187 7 C -0.015 4.015 8 H 0.084 0.916 9 N -0.312 5.312 10 C -0.026 4.026 11 H 0.054 0.946 12 C -0.193 4.193 13 C -0.152 4.152 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.095 4.095 24 H 0.096 0.904 25 C -0.192 4.192 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.175 0.825 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.367 8.798 -16.169 19.478 hybrid contribution -0.934 0.480 1.030 1.471 sum 5.433 9.279 -15.139 18.568 Atomic orbital electron populations 1.21881 0.94379 1.02600 1.01509 1.21677 0.95793 0.92187 0.93560 1.22492 1.01422 0.98458 1.02247 1.62152 1.10975 1.50723 1.01612 1.22093 1.00366 0.95094 0.89540 1.22341 0.97717 1.01707 0.96890 1.21587 0.92577 0.96106 0.91239 0.91622 1.60680 1.54472 1.12561 1.03496 1.21568 0.95421 0.95138 0.90496 0.94639 1.21793 0.97600 0.99990 0.99891 1.21819 1.00805 0.97970 0.94605 1.19102 0.89721 0.95705 0.96892 1.21209 0.96405 1.29157 1.09076 0.92818 1.25009 0.96192 0.96639 0.96481 1.69948 1.02367 1.44549 1.36543 0.86684 0.77074 0.81011 0.83389 1.20326 1.21334 1.20234 1.21096 0.95962 0.99700 0.92733 0.90402 1.21651 0.94659 1.01268 1.01590 1.22160 0.87074 0.98463 0.98962 0.92430 0.92541 0.91703 0.90247 0.92604 0.92324 0.92303 0.90639 0.95089 0.90551 0.91369 0.82537 0.93274 0.92439 0.93990 0.92556 0.92982 0.97088 0.96578 0.93017 0.90809 0.93839 0.93821 0.91141 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.00 37.16 0.33 -1.04 16 2 C 0.08 0.76 2.96 -67.71 -0.20 0.56 16 3 C -0.19 -1.68 8.50 37.16 0.32 -1.37 16 4 N -0.53 -6.33 4.64 -226.70 -1.05 -7.38 16 5 C 0.06 0.73 4.63 -3.84 -0.02 0.71 16 6 C -0.15 -2.20 5.34 -26.65 -0.14 -2.34 16 7 C 0.10 1.36 1.76 -67.59 -0.12 1.24 16 8 H 0.07 0.95 7.12 -51.93 -0.37 0.58 16 9 N -0.68 -11.09 5.41 -99.61 -0.54 -11.63 16 10 C 0.08 1.43 2.46 -67.71 -0.17 1.26 16 11 H 0.04 0.64 7.14 -51.93 -0.37 0.27 16 12 C -0.13 -1.98 9.40 37.16 0.35 -1.63 16 13 C -0.11 -2.34 4.74 -26.73 -0.13 -2.47 16 14 C 0.02 0.58 4.80 -27.88 -0.13 0.45 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.08 -0.96 2.58 -90.54 -0.23 -1.20 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 C -0.13 -1.58 9.07 37.16 0.34 -1.24 16 26 C 0.06 0.70 4.31 -3.84 -0.02 0.69 16 27 H 0.06 0.57 6.30 -51.93 -0.33 0.24 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.05 0.51 6.66 -51.93 -0.35 0.16 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.56 6.52 -51.93 -0.34 0.23 16 34 H 0.08 0.95 6.04 -51.93 -0.31 0.64 16 35 H 0.03 0.38 6.62 -51.93 -0.34 0.04 16 36 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.07 1.11 7.46 -51.93 -0.39 0.72 16 38 H 0.35 6.58 6.19 -39.29 -0.24 6.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 48 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 51 H 0.03 0.35 6.74 -51.93 -0.35 0.00 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -28.40 376.49 -10.39 -38.79 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.96 Total: 3.67 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.23 Total: -19.86 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.85 Total: -45.04 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.40 -10.39 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.032 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds