Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99996 * 2 1 3 5 5 C 1.46853 * 110.99832 * 299.21245 * 4 2 1 6 6 C 1.53033 * 109.52262 * 174.16246 * 5 4 2 7 7 C 1.53112 * 109.27992 * 59.17361 * 6 5 4 8 8 H 1.09005 * 109.52421 * 62.25399 * 7 6 5 9 9 N 1.46904 * 109.52346 * 182.43840 * 7 6 5 10 10 C 1.46896 * 111.00251 * 274.68490 * 9 7 6 11 11 H 1.09003 * 109.47059 * 35.00381 * 10 9 7 12 12 C 1.52995 * 109.47512 * 274.99772 * 10 9 7 13 13 C 1.53011 * 109.46863 * 154.99708 * 10 9 7 14 14 C 1.52997 * 109.46987 * 295.00172 * 13 10 9 15 15 C 1.50706 * 109.46645 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99972 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46908 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47378 * 119.99925 * 19 17 15 22 22 H 1.48497 * 109.47344 * 240.00113 * 19 17 15 23 23 C 1.53120 * 109.16707 * 302.34582 * 7 6 5 24 24 H 1.08994 * 109.50831 * 177.59288 * 23 7 6 25 25 C 1.52997 * 109.49972 * 297.71627 * 23 7 6 26 26 C 1.46844 * 110.99887 * 175.00122 * 4 2 1 27 27 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 28 28 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 29 29 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 31 31 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 33 33 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 34 34 H 1.09001 * 109.46125 * 294.17808 * 5 4 2 35 35 H 1.09003 * 109.46462 * 54.14202 * 5 4 2 36 36 H 1.09007 * 109.50330 * 299.23709 * 6 5 4 37 37 H 1.08999 * 109.53502 * 179.13924 * 6 5 4 38 38 H 1.00898 * 110.99784 * 150.72908 * 9 7 6 39 39 H 1.09003 * 109.47455 * 300.00366 * 12 10 9 40 40 H 1.09004 * 109.46808 * 60.00182 * 12 10 9 41 41 H 1.08996 * 109.47587 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.46899 * 55.00761 * 13 10 9 43 43 H 1.08998 * 109.46517 * 174.99942 * 13 10 9 44 44 H 1.08999 * 109.47043 * 299.99990 * 14 13 10 45 45 H 1.08998 * 109.47157 * 60.00506 * 14 13 10 46 46 H 0.96999 * 120.00117 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.46629 * 179.79680 * 25 23 7 48 48 H 1.09001 * 109.47165 * 299.79559 * 25 23 7 49 49 H 1.09000 * 109.47551 * 59.79841 * 25 23 7 50 50 H 1.09000 * 109.46299 * 305.85220 * 26 4 2 51 51 H 1.08998 * 109.46010 * 65.83553 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5641 -0.0158 2.4206 6 6 1.9679 -0.8418 3.6440 7 6 3.4903 -1.0032 3.6650 8 1 3.9593 -0.0235 3.7574 9 7 3.8792 -1.8443 4.8049 10 6 4.0181 -1.0424 6.0278 11 1 3.2758 -0.2441 6.0251 12 6 5.4209 -0.4342 6.0824 13 6 3.8016 -1.9359 7.2509 14 6 2.3586 -2.4443 7.2619 15 6 2.1456 -3.3249 8.4663 16 1 2.9583 -3.5042 9.1546 17 6 0.9135 -3.9024 8.6888 18 7 -0.0756 -3.6852 7.8497 19 14 0.6493 -4.9932 10.1819 20 1 1.9097 -5.0776 10.9625 21 1 -0.4227 -4.4168 11.0326 22 1 0.2510 -6.3529 9.7374 23 6 3.9436 -1.6665 2.3615 24 1 5.0307 -1.7452 2.3520 25 6 3.3284 -3.0635 2.2586 26 6 3.4826 -0.8164 1.1752 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.0227 0.9712 2.4814 35 1 0.4794 0.0889 2.3949 36 1 1.4986 -1.8242 3.5908 37 1 1.6433 -0.3321 4.5512 38 1 4.7285 -2.3516 4.6067 39 1 6.1632 -1.2325 6.0851 40 1 5.5751 0.2023 5.2110 41 1 5.5239 0.1612 6.9895 42 1 4.4853 -2.7836 7.2071 43 1 3.9917 -1.3622 8.1580 44 1 1.6749 -1.5965 7.3057 45 1 2.1686 -3.0180 6.3548 46 1 -0.9423 -4.0918 8.0060 47 1 3.6485 -3.5338 1.3288 48 1 3.6571 -3.6684 3.1036 49 1 2.2414 -2.9836 2.2698 50 1 3.7913 -1.2934 0.2450 51 1 3.9321 0.1743 1.2421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -20.946802 kcal Electronic energy + Delta-G solvation = -23998.177929 eV Core-core repulsion = 20931.268587 eV Total energy + Delta-G solvation = -3066.909342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93758 -37.34594 -35.04860 -32.91111 -31.49324 -31.14869 -29.50158 -28.17596 -27.40750 -26.02185 -25.00231 -23.42183 -22.64913 -21.13776 -20.11882 -19.62658 -18.26484 -16.40625 -16.06025 -15.23668 -15.12132 -14.99748 -14.45598 -14.34394 -14.19052 -13.95547 -13.48208 -13.13285 -12.85752 -12.78027 -12.38698 -12.29862 -12.22035 -11.93993 -11.91236 -11.51068 -11.40898 -11.37351 -11.12748 -11.10749 -11.07684 -10.84923 -10.72223 -10.64243 -10.38963 -10.16582 -9.98149 -9.92525 -9.54030 -9.14200 -8.82049 -8.20229 -8.17915 -7.75692 -5.83426 -3.84073 3.39320 3.46629 3.50686 3.87187 4.50414 4.58431 4.70341 4.84427 4.93612 4.99275 5.16187 5.22685 5.31760 5.39664 5.44833 5.48017 5.52095 5.55421 5.57375 5.62338 5.66779 5.67815 5.72539 5.78701 5.81730 5.86435 5.98960 6.08130 6.09641 6.16830 6.20551 6.26318 6.31566 6.41695 6.46183 6.50250 6.71112 6.76658 6.94390 6.97271 7.16248 7.18407 7.39182 7.65282 7.90621 7.93847 8.14789 8.30822 8.63833 9.25305 9.78241 11.27520 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.004030 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.393427 B = 6946.939318 C = 7741.981891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.525 5.525 5 C 0.052 3.948 6 C -0.106 4.106 7 C 0.096 3.904 8 H 0.030 0.970 9 N -0.662 5.662 10 C 0.084 3.916 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.097 4.097 14 C 0.031 3.969 15 C -0.517 4.517 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.088 4.088 24 H 0.063 0.937 25 C -0.131 4.131 26 C 0.064 3.936 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.333 0.667 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.005 0.995 45 H 0.034 0.966 46 H 0.257 0.743 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 9.360 -16.860 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.246 4.246 4 N -0.249 5.249 5 C -0.076 4.076 6 C -0.144 4.144 7 C -0.014 4.014 8 H 0.048 0.952 9 N -0.293 5.293 10 C -0.026 4.026 11 H 0.088 0.912 12 C -0.239 4.239 13 C -0.135 4.135 14 C -0.006 4.006 15 C -0.555 4.555 16 H 0.068 0.932 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.107 4.107 24 H 0.082 0.918 25 C -0.188 4.188 26 C -0.065 4.065 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.810 8.638 -16.733 19.707 hybrid contribution 1.035 0.807 0.685 1.480 sum 6.845 9.445 -16.048 19.840 Atomic orbital electron populations 1.21876 0.94315 1.02646 1.01507 1.21677 0.95853 0.92090 0.93595 1.22493 1.01298 0.98561 1.02261 1.62144 1.10342 1.50749 1.01646 1.22208 1.00466 0.95142 0.89739 1.21621 0.95119 1.01854 0.95787 1.21494 0.96123 0.94005 0.89780 0.95234 1.60557 1.39078 1.27726 1.01907 1.21758 0.93948 0.95330 0.91528 0.91209 1.22539 0.99413 1.00838 1.01064 1.21614 1.01577 0.97106 0.93222 1.18979 0.88879 0.95556 0.97151 1.21400 0.96114 1.28842 1.09194 0.93192 1.24982 0.96354 0.96748 0.96290 1.69988 1.02200 1.44770 1.36382 0.86659 0.77965 0.80654 0.83426 1.19941 1.21235 1.21156 1.21327 0.98783 0.96918 0.93694 0.91831 1.21653 1.02604 0.94277 1.00298 1.22066 0.87755 0.97967 0.98670 0.92359 0.92616 0.91648 0.90324 0.92740 0.92363 0.92271 0.95351 0.90402 0.89533 0.91512 0.84815 0.92867 0.93976 0.92452 0.93601 0.93819 0.97632 0.94747 0.93373 0.94281 0.92057 0.90953 0.91099 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.99 37.16 0.33 -1.02 16 2 C 0.08 0.74 2.96 -67.71 -0.20 0.54 16 3 C -0.19 -1.65 8.50 37.16 0.32 -1.33 16 4 N -0.52 -6.05 3.93 -226.68 -0.89 -6.94 16 5 C 0.05 0.66 4.63 -3.83 -0.02 0.64 16 6 C -0.11 -1.61 5.22 -26.66 -0.14 -1.75 16 7 C 0.10 1.34 2.06 -67.59 -0.14 1.20 16 8 H 0.03 0.42 7.12 -51.93 -0.37 0.05 16 9 N -0.66 -10.59 4.76 -99.61 -0.47 -11.06 16 10 C 0.08 1.42 2.40 -67.71 -0.16 1.26 16 11 H 0.07 1.26 7.16 -51.93 -0.37 0.88 16 12 C -0.18 -2.49 9.15 37.15 0.34 -2.15 16 13 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 14 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 19 Si 0.88 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.09 -1.07 2.61 -90.54 -0.24 -1.30 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 C -0.13 -1.75 8.56 37.16 0.32 -1.44 16 26 C 0.06 0.70 4.46 -3.83 -0.02 0.68 16 27 H 0.06 0.57 6.30 -51.93 -0.33 0.24 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.05 0.48 6.65 -51.93 -0.35 0.14 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 34 H 0.03 0.35 6.62 -51.93 -0.34 0.00 16 35 H 0.08 0.97 6.03 -51.93 -0.31 0.66 16 36 H 0.09 1.54 6.58 -51.93 -0.34 1.20 16 37 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 38 H 0.33 4.93 7.81 -39.29 -0.31 4.63 16 39 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 40 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 49 H 0.07 1.10 6.01 -51.93 -0.31 0.79 16 50 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 51 H 0.03 0.32 6.73 -51.93 -0.35 -0.03 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -29.98 373.80 -10.18 -40.16 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.89 Total: 1.68 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.28 Total: -19.94 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.63 Total: -44.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.98 -10.18 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.215 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds