Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 N 1.46904 * 109.47258 * 120.00349 * 2 1 3 5 5 C 1.46847 * 110.99919 * 50.78606 * 4 2 1 6 6 C 1.53039 * 109.52024 * 185.84008 * 5 4 2 7 7 C 1.53111 * 109.27901 * 300.81957 * 6 5 4 8 8 H 1.08994 * 109.57971 * 297.71528 * 7 6 5 9 9 N 1.46907 * 109.52460 * 177.56076 * 7 6 5 10 10 C 1.46894 * 111.00115 * 102.48669 * 9 7 6 11 11 H 1.09005 * 109.47125 * 38.02855 * 10 9 7 12 12 C 1.53002 * 109.47361 * 278.02742 * 10 9 7 13 13 C 1.52997 * 109.47096 * 158.02604 * 10 9 7 14 14 C 1.53007 * 109.47125 * 294.99842 * 13 10 9 15 15 C 1.50704 * 109.47174 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99905 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00051 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00227 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47287 * 59.99626 * 19 17 15 21 21 H 1.48494 * 109.47476 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47242 * 299.99706 * 19 17 15 23 23 C 1.53117 * 109.16202 * 57.65622 * 7 6 5 24 24 H 1.09001 * 109.50427 * 62.32315 * 23 7 6 25 25 C 1.53001 * 109.50644 * 182.40131 * 23 7 6 26 26 C 1.46848 * 111.00044 * 174.99712 * 4 2 1 27 27 H 1.09002 * 109.46919 * 299.99909 * 1 2 3 28 28 H 1.08994 * 109.47257 * 59.99748 * 1 2 3 29 29 H 1.08999 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46919 * 240.00091 * 2 1 3 31 31 H 1.09003 * 109.46750 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46840 * 299.99918 * 3 2 1 33 33 H 1.08993 * 109.46682 * 60.00620 * 3 2 1 34 34 H 1.09001 * 109.46484 * 305.85450 * 5 4 2 35 35 H 1.08999 * 109.46392 * 65.82806 * 5 4 2 36 36 H 1.09007 * 109.49987 * 180.87937 * 6 5 4 37 37 H 1.09003 * 109.50171 * 60.76226 * 6 5 4 38 38 H 1.00903 * 110.99660 * 338.53363 * 9 7 6 39 39 H 1.09001 * 109.46581 * 305.73904 * 12 10 9 40 40 H 1.08994 * 109.47064 * 65.73806 * 12 10 9 41 41 H 1.09002 * 109.47124 * 185.74069 * 12 10 9 42 42 H 1.09003 * 109.47042 * 175.00310 * 13 10 9 43 43 H 1.08994 * 109.47571 * 55.00125 * 13 10 9 44 44 H 1.08992 * 109.47170 * 300.00011 * 14 13 10 45 45 H 1.09003 * 109.46778 * 60.00306 * 14 13 10 46 46 H 0.97004 * 119.99953 * 180.02562 * 18 17 15 47 47 H 1.08999 * 109.46843 * 60.00281 * 25 23 7 48 48 H 1.09002 * 109.47238 * 180.02562 * 25 23 7 49 49 H 1.08998 * 109.47325 * 300.00224 * 25 23 7 50 50 H 1.08999 * 109.45978 * 54.14158 * 26 4 2 51 51 H 1.08995 * 109.46277 * 294.17290 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3780 -2.0050 1.3481 6 6 1.8004 -2.6330 2.6783 7 6 3.3239 -2.7830 2.7053 8 1 3.6389 -3.4558 1.9077 9 7 3.7403 -3.3314 4.0030 10 6 4.0592 -4.7610 3.8925 11 1 4.5618 -4.9489 2.9437 12 6 2.7672 -5.5782 3.9558 13 6 4.9779 -5.1693 5.0458 14 6 6.3184 -4.4440 4.9113 15 6 7.2231 -4.8456 6.0477 16 1 6.8768 -5.5482 6.7912 17 6 8.4929 -4.3162 6.1381 18 7 8.9148 -3.4610 5.2324 19 14 9.6146 -4.8145 7.5463 20 1 9.8398 -6.2816 7.5043 21 1 10.9155 -4.1105 7.4158 22 1 8.9802 -4.4479 8.8380 23 6 3.9679 -1.4091 2.5000 24 1 3.6854 -0.7486 3.3198 25 6 5.4902 -1.5585 2.4658 26 6 3.4828 -0.8166 1.1750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 0.2949 -1.8837 1.3315 35 1 1.6833 -2.6537 0.5271 36 1 1.3362 -3.6139 2.7812 37 1 1.4832 -1.9915 3.5005 38 1 3.0346 -3.1716 4.7063 39 1 2.2142 -5.3141 4.8573 40 1 2.1572 -5.3619 3.0789 41 1 3.0099 -6.6406 3.9766 42 1 5.1429 -6.2463 5.0152 43 1 4.5126 -4.8998 5.9939 44 1 6.7838 -4.7135 3.9633 45 1 6.1534 -3.3670 4.9420 46 1 9.8083 -3.0887 5.2959 47 1 5.7722 -2.2178 1.6449 48 1 5.9481 -0.5801 2.3201 49 1 5.8349 -1.9837 3.4083 50 1 3.9283 0.1680 1.0326 51 1 3.7782 -1.4708 0.3549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -23.432578 kcal Electronic energy + Delta-G solvation = -23795.925993 eV Core-core repulsion = 20728.908859 eV Total energy + Delta-G solvation = -3067.017133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.74695 -37.33297 -34.92618 -32.98069 -32.19149 -31.25615 -29.41811 -28.29261 -27.62057 -25.49712 -24.93780 -23.18489 -21.87535 -21.22773 -20.24038 -20.03106 -19.06562 -16.55397 -16.07442 -15.45589 -15.06240 -14.78342 -14.56191 -14.28798 -14.22574 -13.82108 -13.25458 -12.90854 -12.87702 -12.69862 -12.40826 -12.34866 -12.26485 -12.06324 -11.79948 -11.73100 -11.54950 -11.25166 -11.16598 -11.11068 -11.03510 -10.94389 -10.81518 -10.49668 -10.44952 -10.29255 -10.18132 -9.76980 -9.54880 -9.12255 -8.83115 -8.34066 -8.18261 -7.75247 -5.84724 -3.85378 3.40762 3.44977 3.47557 3.76836 4.50618 4.57213 4.69064 4.77202 4.85695 5.05140 5.14174 5.18451 5.29346 5.40092 5.43040 5.46116 5.50596 5.53394 5.55495 5.61436 5.63160 5.65439 5.69862 5.79632 5.81228 5.87679 5.95733 6.02228 6.06436 6.14659 6.18766 6.23307 6.26644 6.35036 6.46520 6.55888 6.68998 6.80089 6.94880 7.03120 7.09285 7.22553 7.37486 7.64595 7.89028 7.93376 8.13203 8.29237 8.62212 9.23271 9.76778 11.26013 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.003642 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.669512 B = 7685.546846 C = 8612.690122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.144 4.144 4 N -0.533 5.533 5 C 0.056 3.944 6 C -0.142 4.142 7 C 0.095 3.905 8 H 0.063 0.937 9 N -0.663 5.663 10 C 0.086 3.914 11 H 0.070 0.930 12 C -0.181 4.181 13 C -0.099 4.099 14 C 0.031 3.969 15 C -0.519 4.519 16 H 0.049 0.951 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.070 4.070 24 H 0.076 0.924 25 C -0.140 4.140 26 C 0.058 3.942 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.336 0.664 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.006 0.994 45 H 0.035 0.965 46 H 0.258 0.742 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 5.773 -11.186 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.202 4.202 4 N -0.258 5.258 5 C -0.072 4.072 6 C -0.181 4.181 7 C -0.016 4.016 8 H 0.081 0.919 9 N -0.292 5.292 10 C -0.024 4.024 11 H 0.088 0.912 12 C -0.240 4.240 13 C -0.137 4.137 14 C -0.006 4.006 15 C -0.557 4.557 16 H 0.067 0.933 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.090 4.090 24 H 0.094 0.906 25 C -0.198 4.198 26 C -0.070 4.070 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.695 6.359 -10.892 20.924 hybrid contribution 0.001 -1.204 -0.086 1.207 sum -16.694 5.155 -10.978 20.635 Atomic orbital electron populations 1.21956 0.94654 1.01883 1.02137 1.21584 0.95314 0.95274 0.91126 1.21855 1.01277 0.95166 1.01887 1.62007 1.06210 1.19561 1.38037 1.22102 0.99159 0.89075 0.96863 1.22377 0.97665 1.00192 0.97856 1.21657 0.91518 0.96092 0.92290 0.91910 1.60521 1.47232 1.15326 1.06105 1.21816 0.94045 0.85851 1.00682 0.91210 1.22645 0.99308 1.01441 1.00649 1.21635 0.97842 0.98922 0.95316 1.19001 0.89006 0.96821 0.95730 1.21323 0.98665 1.25405 1.10343 0.93297 1.24976 0.98065 0.95341 0.95961 1.69963 1.18230 1.30521 1.34576 0.86770 0.80114 0.78515 0.83200 1.20517 1.21443 1.20414 1.21104 0.96137 0.95722 0.96031 0.90565 1.21732 0.93472 1.00395 1.04168 1.22283 0.86651 1.00514 0.97566 0.91717 0.92425 0.92512 0.94608 0.92437 0.92572 0.91745 0.90590 0.95424 0.91768 0.90870 0.84568 0.92936 0.93694 0.92517 0.93750 0.93583 0.97581 0.94663 0.93257 0.94032 0.93981 0.89095 0.90550 0.95356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.65 37.16 0.32 -0.88 16 2 C 0.08 0.72 2.69 -67.71 -0.18 0.54 16 3 C -0.14 -1.27 9.10 37.16 0.34 -0.93 16 4 N -0.53 -5.99 4.52 -226.69 -1.03 -7.02 16 5 C 0.06 0.61 5.01 -3.83 -0.02 0.59 16 6 C -0.14 -1.63 5.19 -26.65 -0.14 -1.77 16 7 C 0.09 1.31 1.89 -67.59 -0.13 1.18 16 8 H 0.06 0.93 7.24 -51.93 -0.38 0.56 16 9 N -0.66 -10.44 4.90 -99.62 -0.49 -10.93 16 10 C 0.09 1.43 2.51 -67.72 -0.17 1.26 16 11 H 0.07 1.24 7.45 -51.93 -0.39 0.86 16 12 C -0.18 -2.45 8.86 37.16 0.33 -2.12 16 13 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 14 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 19 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.07 -1.00 2.58 -90.54 -0.23 -1.23 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 C -0.14 -2.34 9.07 37.16 0.34 -2.00 16 26 C 0.06 0.72 4.57 -3.83 -0.02 0.70 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 6.19 -51.93 -0.32 0.12 16 30 H 0.04 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 6.41 -51.93 -0.33 0.20 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.73 5.83 -51.93 -0.30 0.43 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.70 6.32 -51.92 -0.33 0.37 16 37 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.34 4.95 7.93 -39.29 -0.31 4.64 16 39 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.04 0.55 6.51 -51.93 -0.34 0.21 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.04 0.97 6.58 -51.93 -0.34 0.63 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 1.88 6.51 -51.93 -0.34 1.54 16 50 H 0.08 0.92 6.18 -51.93 -0.32 0.59 16 51 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -29.50 377.26 -10.35 -39.85 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -10.00 Total: 1.62 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.24 Total: -19.90 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.78 Total: -44.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.50 -10.35 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.418 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds