Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.52999 * 109.46798 * 120.00010 * 2 1 3 5 5 C 1.53000 * 109.47280 * 185.00309 * 4 2 1 6 6 C 1.50699 * 109.47457 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99743 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00079 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99957 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99817 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47035 * 90.00160 * 10 8 6 12 12 H 1.48503 * 109.46735 * 210.00136 * 10 8 6 13 13 H 1.48497 * 109.47121 * 329.99605 * 10 8 6 14 14 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 15 15 C 1.46906 * 110.99789 * 85.00200 * 14 2 1 16 16 C 1.53002 * 109.47053 * 179.97438 * 15 14 2 17 17 C 1.52996 * 109.46891 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46891 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.46886 * 179.97438 * 18 17 16 20 20 N 1.46898 * 109.46822 * 180.02562 * 19 18 17 21 21 C 1.48536 * 111.00164 * 52.60778 * 20 19 18 22 22 C 1.54933 * 103.23000 * 159.71858 * 21 20 19 23 23 C 1.54596 * 102.92277 * 322.58624 * 22 21 20 24 24 C 1.47901 * 110.99989 * 170.00247 * 20 19 18 25 25 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47079 * 304.99668 * 4 2 1 29 29 H 1.09001 * 109.47701 * 65.00096 * 4 2 1 30 30 H 1.09008 * 109.46984 * 299.99614 * 5 4 2 31 31 H 1.09002 * 109.47447 * 59.99249 * 5 4 2 32 32 H 0.96997 * 119.99773 * 179.97438 * 9 8 6 33 33 H 1.00899 * 111.00672 * 321.05145 * 14 2 1 34 34 H 1.08992 * 109.47459 * 299.99826 * 15 14 2 35 35 H 1.09004 * 109.47040 * 59.99976 * 15 14 2 36 36 H 1.09001 * 109.47142 * 300.00160 * 16 15 14 37 37 H 1.09004 * 109.47006 * 60.00213 * 16 15 14 38 38 H 1.09001 * 109.47372 * 300.00036 * 17 16 15 39 39 H 1.09004 * 109.47108 * 60.00292 * 17 16 15 40 40 H 1.08998 * 109.47844 * 299.99997 * 18 17 16 41 41 H 1.09001 * 109.47248 * 60.00689 * 18 17 16 42 42 H 1.09001 * 109.47377 * 300.00037 * 19 18 17 43 43 H 1.08996 * 109.47261 * 60.00578 * 19 18 17 44 44 H 1.09000 * 110.66235 * 278.15212 * 21 20 19 45 45 H 1.09001 * 110.66715 * 41.28126 * 21 20 19 46 46 H 1.08996 * 110.72509 * 204.22591 * 22 21 20 47 47 H 1.09000 * 110.72654 * 80.93882 * 22 21 20 48 48 H 1.08996 * 110.30885 * 263.04521 * 23 22 21 49 49 H 1.08996 * 110.31133 * 140.87400 * 23 22 21 50 50 H 1.09003 * 109.91908 * 333.50785 * 24 20 19 51 51 H 1.08994 * 109.92127 * 94.60468 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.6133 1.3139 6 6 4.0670 -1.3232 2.5446 7 1 3.3684 -1.8030 3.2141 8 6 5.4183 -1.3601 2.8160 9 7 6.2690 -0.7762 2.0005 10 14 6.0408 -2.2407 4.3413 11 1 6.3204 -3.6616 4.0130 12 1 7.2873 -1.5876 4.8157 13 1 5.0096 -2.1725 5.4077 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2225 -2.3469 16 6 2.5963 -0.5330 -3.5741 17 6 2.6611 0.4199 -4.7693 18 6 3.1755 -0.3355 -5.9964 19 6 3.2397 0.6173 -7.1919 20 7 3.7331 -0.1081 -8.3702 21 6 2.9398 -1.3414 -8.6067 22 6 3.2204 -1.6634 -10.0960 23 6 3.2711 -0.2630 -10.7488 24 6 3.5851 0.7075 -9.5950 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0729 0.4261 31 1 3.8531 0.4370 1.3574 32 1 7.2196 -0.8019 2.1917 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6162 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 3.5918 -0.9264 -3.3681 37 1 1.9202 -1.3569 -3.8029 38 1 1.6655 0.8129 -4.9751 39 1 3.3370 1.2440 -4.5408 40 1 4.1712 -0.7282 -5.7905 41 1 2.5000 -1.1598 -6.2252 42 1 2.2438 1.0096 -7.3978 43 1 3.9150 1.4419 -6.9635 44 1 3.2879 -2.1515 -7.9658 45 1 1.8782 -1.1525 -8.4473 46 1 2.4119 -2.2581 -10.5210 47 1 4.1765 -2.1752 -10.2065 48 1 2.3077 -0.0192 -11.1966 49 1 4.0593 -0.2243 -11.5007 50 1 2.7659 1.4161 -9.4726 51 1 4.5120 1.2435 -9.7986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = -35.887371 kcal Electronic energy + Delta-G solvation = -21776.881435 eV Core-core repulsion = 18709.324221 eV Total energy + Delta-G solvation = -3067.557214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.32179 -37.48574 -35.60795 -33.45094 -32.55240 -30.91913 -29.38423 -29.06710 -27.72987 -25.11933 -24.34770 -22.32548 -21.35401 -21.23550 -20.92656 -20.43652 -19.58392 -16.42439 -16.19658 -16.05931 -15.88266 -15.16355 -14.80656 -14.55789 -14.34159 -14.01378 -13.57021 -13.32648 -13.09165 -12.77287 -12.62239 -12.46034 -12.27257 -11.98072 -11.83248 -11.75108 -11.60789 -11.49181 -11.38205 -11.12641 -11.01304 -10.91727 -10.86959 -10.85422 -10.61155 -10.47738 -10.40193 -10.04047 -9.57925 -9.15832 -8.85461 -8.70615 -8.19127 -7.79778 -5.84386 -3.85427 3.39969 3.45684 3.49045 3.67407 4.27222 4.35857 4.49868 4.57445 4.62050 4.81375 4.92743 4.93980 5.08151 5.14136 5.18498 5.30824 5.35829 5.42224 5.42889 5.48025 5.50827 5.52829 5.54524 5.59852 5.63927 5.71230 5.72359 5.79006 5.82014 5.86302 5.87683 6.06337 6.11839 6.16366 6.29164 6.38697 6.42702 6.51706 6.59595 6.73713 6.77199 6.94336 7.36664 7.59293 7.88604 7.90231 8.12961 8.28631 8.62243 9.23796 9.76857 11.26721 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.002281 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.222531 B =12270.470640 C =13229.349531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.672 5.672 15 C 0.061 3.939 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.118 4.118 19 C 0.047 3.953 20 N -0.519 5.519 21 C 0.033 3.967 22 C -0.126 4.126 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.006 0.994 32 H 0.258 0.742 33 H 0.333 0.667 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 2.382 -24.172 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.302 5.302 15 C -0.068 4.068 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.081 4.081 20 N -0.243 5.243 21 C -0.095 4.095 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.914 2.400 -23.916 25.636 hybrid contribution -1.428 -0.066 0.529 1.524 sum -10.343 2.334 -23.387 25.678 Atomic orbital electron populations 1.22535 0.98768 1.01441 1.01148 1.21730 0.90800 0.98341 0.91747 0.91137 1.21630 1.00616 0.98335 0.93063 1.18997 0.88321 0.96456 0.97012 1.21359 0.91837 1.33978 1.08439 0.93130 1.25009 0.97157 0.95827 0.96535 1.69982 1.02121 1.44421 1.36944 0.86678 0.78242 0.79841 0.83694 1.20790 1.21376 1.20072 1.60506 1.57523 1.09067 1.03137 1.21955 0.98375 0.95976 0.90512 1.21547 1.02657 0.97880 0.93329 1.21498 1.00874 0.98740 0.94271 1.21655 1.02404 0.98037 0.93532 1.22360 0.98150 0.97071 0.90537 1.64813 1.51735 1.05265 1.02514 1.23253 0.95906 0.93734 0.96567 1.22498 1.02275 0.96744 0.94851 1.22401 1.01725 0.95080 0.97787 1.22880 1.00931 0.95712 0.89890 0.92323 0.93840 0.92851 0.93619 0.93536 0.94902 0.97539 0.93267 0.84969 0.96380 0.91166 0.90599 0.92572 0.92575 0.91670 0.90771 0.92063 0.94922 0.90512 0.89727 0.93815 0.91143 0.90652 0.91658 0.91005 0.93907 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.16 37.16 0.34 -2.18 16 2 C 0.08 1.45 2.59 -67.72 -0.18 1.28 16 3 H 0.07 1.29 7.80 -51.93 -0.40 0.88 16 4 C -0.10 -2.10 4.83 -26.73 -0.13 -2.23 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.91 13.29 55.43 0.74 -27.18 16 10 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.67 -11.19 5.70 -106.72 -0.61 -11.80 16 15 C 0.06 0.86 5.48 -3.82 -0.02 0.84 16 16 C -0.12 -1.42 5.47 -26.73 -0.15 -1.57 16 17 C -0.12 -1.18 5.21 -26.73 -0.14 -1.31 16 18 C -0.12 -1.14 4.87 -26.73 -0.13 -1.27 16 19 C 0.05 0.43 5.03 -3.82 -0.02 0.41 16 20 N -0.52 -4.88 5.40 -230.45 -1.24 -6.12 16 21 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 22 C -0.13 -0.86 7.06 -24.87 -0.18 -1.04 16 23 C -0.13 -0.86 6.93 -25.37 -0.18 -1.04 16 24 C 0.03 0.27 6.70 -2.75 -0.02 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.95 7.75 -51.92 -0.40 0.55 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.33 5.02 8.47 -39.29 -0.33 4.69 16 34 H 0.02 0.23 7.44 -51.93 -0.39 -0.15 16 35 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.57 6.79 -51.93 -0.35 0.22 16 42 H 0.03 0.29 7.81 -51.93 -0.41 -0.12 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 45 H 0.04 0.35 8.00 -51.93 -0.42 -0.06 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.04 0.32 7.57 -51.93 -0.39 -0.07 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -31.40 394.22 -12.14 -43.54 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -10.60 Total: -0.77 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.35 Total: -20.98 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.12 Total: -45.10 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.40 -12.14 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.657 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds