Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 C 1.52998 * 109.47199 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47522 * 179.97438 * 17 16 15 19 19 C 1.52992 * 109.47430 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.47248 * 179.97438 * 19 18 17 21 21 C 1.48537 * 110.99459 * 52.61081 * 20 19 18 22 22 C 1.54936 * 103.22694 * 159.72156 * 21 20 19 23 23 C 1.54598 * 102.92235 * 322.58190 * 22 21 20 24 24 C 1.47903 * 111.00065 * 170.00084 * 20 19 18 25 25 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 28 28 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 29 29 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 34 34 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 35 35 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 36 36 H 1.09007 * 109.47032 * 299.99580 * 16 15 14 37 37 H 1.08991 * 109.47451 * 59.99736 * 16 15 14 38 38 H 1.09007 * 109.47167 * 299.99748 * 17 16 15 39 39 H 1.08997 * 109.47669 * 59.99576 * 17 16 15 40 40 H 1.08997 * 109.46952 * 300.00153 * 18 17 16 41 41 H 1.09002 * 109.46728 * 59.99702 * 18 17 16 42 42 H 1.08997 * 109.47595 * 300.00270 * 19 18 17 43 43 H 1.09002 * 109.46992 * 60.00374 * 19 18 17 44 44 H 1.09006 * 110.66647 * 278.14950 * 21 20 19 45 45 H 1.08997 * 110.67007 * 41.28313 * 21 20 19 46 46 H 1.08998 * 110.72649 * 204.22803 * 22 21 20 47 47 H 1.09001 * 110.73086 * 80.93833 * 22 21 20 48 48 H 1.09004 * 110.30692 * 263.04530 * 23 22 21 49 49 H 1.09003 * 110.31143 * 140.87243 * 23 22 21 50 50 H 1.09001 * 109.91647 * 333.50975 * 24 20 19 51 51 H 1.09000 * 109.91568 * 94.60943 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 5.8570 -1.9810 -3.8889 10 14 6.6266 -0.5294 -1.6581 11 1 7.0614 -1.4961 -0.6180 12 1 7.8089 -0.0647 -2.4272 13 1 5.9699 0.6337 -1.0092 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 6 2.6610 0.4201 4.7694 18 6 3.1742 -0.3354 5.9969 19 6 3.2396 0.6176 7.1919 20 7 3.7317 -0.1080 8.3706 21 6 5.0066 -0.8085 8.0703 22 6 5.6204 -1.0446 9.4732 23 6 5.2442 0.2459 10.2368 24 6 4.0350 0.8240 9.4783 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6054 -0.2617 -2.1370 29 1 1.7518 -1.7715 -1.2056 30 1 3.9995 -1.0726 -0.4260 31 1 3.8532 0.4372 -1.3573 32 1 6.8077 -2.0067 -4.0799 33 1 2.9174 -1.1204 1.0287 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 1.9202 -1.3567 3.8030 37 1 3.5917 -0.9261 3.3683 38 1 3.3368 1.2443 4.5408 39 1 1.6654 0.8131 4.9752 40 1 2.4982 -1.1593 6.2253 41 1 4.1698 -0.7287 5.7914 42 1 3.9158 1.4413 6.9633 43 1 2.2441 1.0112 7.3976 44 1 4.8154 -1.7576 7.5694 45 1 5.6590 -0.1780 7.4661 46 1 6.7031 -1.1520 9.4074 47 1 5.1732 -1.9179 9.9480 48 1 6.0746 0.9517 10.2189 49 1 4.9686 0.0106 11.2648 50 1 4.2829 1.8074 9.0788 51 1 3.1763 0.8999 10.1453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = -34.821559 kcal Electronic energy + Delta-G solvation = -21933.013439 eV Core-core repulsion = 18865.502442 eV Total energy + Delta-G solvation = -3067.510997 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.36405 -37.61885 -35.73083 -33.53999 -32.60137 -31.08183 -29.72657 -29.25207 -27.95245 -25.44612 -24.39134 -22.36036 -21.37738 -21.06591 -20.94527 -20.48933 -19.51162 -16.81589 -16.47777 -16.23176 -16.00935 -15.31843 -15.04290 -14.57937 -14.27192 -14.06274 -13.70419 -13.37860 -13.08130 -13.02995 -12.72398 -12.55996 -12.32787 -12.07090 -12.03100 -11.78530 -11.68472 -11.55646 -11.48353 -11.39313 -11.11224 -11.02700 -11.01243 -10.92496 -10.73978 -10.55674 -10.34538 -9.94260 -9.76488 -9.43951 -9.17844 -8.76264 -8.55131 -8.07069 -6.05005 -4.02698 3.27974 3.35602 3.38250 3.62441 4.22699 4.32508 4.42607 4.43763 4.58507 4.73635 4.86570 4.90676 4.99541 5.07390 5.14435 5.25689 5.28324 5.31552 5.38511 5.41517 5.45023 5.46375 5.52674 5.57875 5.61257 5.66751 5.71757 5.77669 5.78551 5.83139 5.86962 5.94516 6.01760 6.12571 6.24506 6.27620 6.31823 6.43490 6.44730 6.54202 6.71474 6.75266 6.86571 7.27579 7.31667 7.54254 7.77343 7.81449 8.54066 9.00694 9.57521 11.08586 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.002697 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.321159 B =10380.801933 C =11828.570734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.903 5.903 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.689 5.689 15 C 0.059 3.941 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.046 3.954 20 N -0.519 5.519 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.348 0.652 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 6.272 26.985 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.707 3.293 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.323 5.323 15 C -0.071 4.071 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.169 0.831 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.459 5.624 27.183 28.291 hybrid contribution 2.188 1.620 -0.011 2.723 sum -3.271 7.244 27.172 28.311 Atomic orbital electron populations 1.21774 0.95485 1.01868 1.00228 1.21643 0.94882 0.95940 0.90552 0.94582 1.21663 0.97993 1.00122 0.94654 1.19606 0.92020 0.96463 0.97106 1.21134 0.92911 1.34127 1.07402 0.90972 1.25044 0.98424 0.94964 0.95113 1.69915 1.14575 1.43473 1.26271 0.86785 0.80844 0.80428 0.81238 1.20248 1.21389 1.19275 1.60586 1.34342 1.32810 1.04572 1.21968 1.00006 0.94073 0.91045 1.21556 1.01660 0.98640 0.93664 1.21501 1.01266 0.98395 0.94248 1.21651 1.02013 0.98647 0.93329 1.22353 1.00422 0.95369 0.90020 1.64826 1.27177 1.25741 1.06616 1.23264 0.89990 0.99437 0.96853 1.22497 1.00394 0.98098 0.95367 1.22403 0.97466 0.97353 0.99780 1.22879 0.98052 0.94559 0.93920 0.92922 0.92237 0.93779 0.92114 0.91847 0.97328 0.97035 0.92762 0.83110 0.95800 0.91543 0.91048 0.92107 0.92300 0.91878 0.90956 0.91865 0.94789 0.90634 0.89722 0.93673 0.91062 0.90685 0.91597 0.91009 0.93868 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 37.16 0.35 -1.60 16 2 C 0.08 1.33 2.65 -67.71 -0.18 1.15 16 3 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.14 4.74 -26.73 -0.13 -2.26 16 5 C -0.01 -0.35 3.87 -27.88 -0.11 -0.45 16 6 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 10 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 14 N -0.69 -11.07 6.31 -106.73 -0.67 -11.74 16 15 C 0.06 0.79 5.48 -3.83 -0.02 0.77 16 16 C -0.12 -1.35 5.47 -26.73 -0.15 -1.50 16 17 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 18 C -0.12 -1.08 4.87 -26.73 -0.13 -1.21 16 19 C 0.05 0.40 5.03 -3.83 -0.02 0.38 16 20 N -0.52 -4.66 5.40 -230.45 -1.24 -5.90 16 21 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 22 C -0.13 -0.87 7.06 -24.87 -0.18 -1.04 16 23 C -0.13 -0.85 6.93 -25.37 -0.18 -1.03 16 24 C 0.03 0.26 6.70 -2.75 -0.02 0.24 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.01 0.20 5.85 -51.93 -0.30 -0.10 16 31 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.35 6.07 6.47 -39.29 -0.25 5.81 16 34 H 0.02 0.33 8.05 -51.93 -0.42 -0.08 16 35 H 0.07 0.84 7.44 -51.93 -0.39 0.46 16 36 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.60 6.80 -51.93 -0.35 0.24 16 42 H 0.03 0.30 7.81 -51.93 -0.41 -0.11 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 45 H 0.04 0.38 8.00 -51.93 -0.42 -0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.04 0.32 7.57 -51.93 -0.39 -0.07 16 51 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -30.27 388.09 -11.72 -41.98 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -10.42 Total: 0.87 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.33 Total: -20.93 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.14 Total: -44.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.27 -11.72 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.159 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds