Wall clock time and date at job start Tue Mar 31 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.53125 * 109.52220 * 294.68479 * 18 17 16 20 20 C 1.53039 * 109.27683 * 182.44011 * 19 18 17 21 21 N 1.46847 * 109.52355 * 59.17794 * 20 19 18 22 22 C 1.46901 * 110.99891 * 174.15808 * 21 20 19 23 23 C 1.46844 * 111.19953 * 298.25951 * 21 20 19 24 24 C 1.53036 * 109.52624 * 61.74147 * 23 21 20 25 25 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 27 27 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 28 28 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 29 29 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 34 34 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 35 35 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 36 36 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 37 37 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 38 38 H 1.08997 * 109.47371 * 299.99838 * 17 16 15 39 39 H 1.09006 * 109.46944 * 60.00026 * 17 16 15 40 40 H 1.09000 * 109.52306 * 54.87212 * 18 17 16 41 41 H 1.09000 * 109.49840 * 302.37884 * 19 18 17 42 42 H 1.08997 * 109.50525 * 62.49641 * 19 18 17 43 43 H 1.08994 * 109.46431 * 299.16352 * 20 19 18 44 44 H 1.09004 * 109.46190 * 179.18978 * 20 19 18 45 45 H 1.09008 * 109.46952 * 184.21050 * 22 21 20 46 46 H 1.08991 * 109.47346 * 304.21015 * 22 21 20 47 47 H 1.08997 * 109.46826 * 64.21482 * 22 21 20 48 48 H 1.09000 * 109.46306 * 301.72505 * 23 21 20 49 49 H 1.08999 * 109.45654 * 181.75290 * 23 21 20 50 50 H 1.08995 * 109.50332 * 180.88163 * 24 23 21 51 51 H 1.08998 * 109.53603 * 60.78197 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 5.8569 -1.9791 3.8900 10 14 6.6266 -0.5288 1.6585 11 1 6.8312 0.8793 2.0834 12 1 7.9238 -1.2505 1.6956 13 1 6.0851 -0.5549 0.2760 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 6 2.6597 0.4197 -4.7698 18 6 3.1728 -0.3360 -5.9972 19 6 4.6204 -0.7749 -5.7597 20 6 5.1478 -1.4764 -7.0134 21 7 5.0775 -0.5572 -8.1564 22 6 5.7031 -1.1486 -9.3468 23 6 3.6913 -0.1592 -8.4332 24 6 3.1204 0.5817 -7.2219 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6055 -0.2617 2.1370 30 1 3.8532 0.4370 1.3572 31 1 3.9995 -1.0727 0.4258 32 1 6.8075 -2.0048 4.0810 33 1 1.4496 -1.4980 -1.4101 34 1 1.0870 0.6162 -2.5526 35 1 2.7588 1.0461 -2.1183 36 1 3.5903 -0.9273 -3.3692 37 1 1.9182 -1.3566 -3.8030 38 1 1.6642 0.8134 -4.9750 39 1 3.3363 1.2433 -4.5415 40 1 2.5494 -1.2128 -6.1721 41 1 5.2353 0.0994 -5.5460 42 1 4.6583 -1.4625 -4.9148 43 1 4.5410 -2.3582 -7.2186 44 1 6.1831 -1.7775 -6.8528 45 1 5.7039 -0.4193 -10.1570 46 1 6.7288 -1.4343 -9.1141 47 1 5.1405 -2.0306 -9.6526 48 1 3.0912 -1.0471 -8.6317 49 1 3.6688 0.4965 -9.3036 50 1 2.0866 0.8633 -7.4216 51 1 3.7112 1.4776 -7.0309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:04 Heat of formation + Delta-G solvation = -36.269250 kcal Electronic energy + Delta-G solvation = -22497.212323 eV Core-core repulsion = 19429.638550 eV Total energy + Delta-G solvation = -3067.573773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.49201 -37.54637 -35.69266 -33.46286 -32.34120 -31.12219 -30.44797 -29.10810 -26.94907 -25.28391 -24.34394 -23.48108 -22.03241 -21.10708 -20.83405 -19.88656 -19.65896 -16.53112 -16.15067 -15.77093 -15.38132 -15.15471 -14.91403 -14.56261 -14.26765 -14.09468 -13.97723 -13.36664 -13.10239 -12.87086 -12.68043 -12.61159 -12.46526 -12.41463 -12.20092 -11.89250 -11.70706 -11.45231 -11.42868 -11.36681 -11.21028 -10.87093 -10.79134 -10.69203 -10.51741 -10.31115 -10.15006 -9.77299 -9.59009 -9.42176 -8.96626 -8.64165 -8.39590 -7.94958 -5.91090 -3.86912 3.41663 3.48488 3.57386 3.63332 4.28996 4.52773 4.56419 4.59272 4.66019 4.85024 5.00777 5.02009 5.08592 5.15201 5.22695 5.26077 5.32030 5.34107 5.44739 5.44879 5.47231 5.49073 5.52373 5.56648 5.58816 5.65645 5.74597 5.79589 5.83599 5.90305 5.92061 6.01188 6.06339 6.17467 6.23864 6.30369 6.33704 6.40811 6.59489 6.76021 6.76552 6.78605 7.15343 7.41778 7.56874 7.75073 7.80698 7.98246 8.69626 9.15191 9.73360 11.22826 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003245 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.192246 B = 8626.411509 C =10134.154943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.006 4.006 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.911 5.911 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.676 5.676 15 C 0.060 3.940 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.087 4.087 19 C -0.115 4.115 20 C 0.055 3.945 21 N -0.544 5.544 22 C 0.025 3.975 23 C 0.056 3.944 24 C -0.112 4.112 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.001 0.999 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.335 0.665 34 H 0.021 0.979 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.023 0.977 48 H 0.031 0.969 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 4.252 -26.473 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.707 3.293 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.307 5.307 15 C -0.069 4.069 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.105 4.105 19 C -0.153 4.153 20 C -0.073 4.073 21 N -0.269 5.269 22 C -0.124 4.124 23 C -0.072 4.072 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.235 4.711 -26.092 27.237 hybrid contribution -0.689 -0.259 -0.909 1.170 sum -6.924 4.451 -27.002 28.228 Atomic orbital electron populations 1.22514 0.98414 1.01639 1.01295 1.21761 0.91225 0.98236 0.91656 0.91143 1.21454 0.98966 0.99019 0.93389 1.19470 0.91548 0.95787 0.97548 1.21272 0.92803 1.33878 1.07426 0.91447 1.25030 0.98464 0.95140 0.95077 1.69933 1.14389 1.44181 1.26545 0.86768 0.80363 0.79442 0.82731 1.20645 1.21717 1.18493 1.60537 1.57656 1.09229 1.03233 1.21968 0.98562 0.95888 0.90525 1.21618 1.02528 0.98060 0.93464 1.21568 1.00914 0.98427 0.93973 1.21199 0.96559 0.98189 0.94598 1.21715 0.95728 1.01240 0.96568 1.22131 1.00986 0.93258 0.90939 1.61927 1.17646 1.41876 1.05468 1.22351 0.99421 0.97912 0.92678 1.22089 0.88055 0.98692 0.98367 1.21651 1.00412 0.98983 0.93967 0.92696 0.92184 0.93736 0.92906 0.92983 0.98021 0.95023 0.93004 0.84705 0.96130 0.91329 0.90646 0.92481 0.92297 0.91734 0.91665 0.90954 0.90748 0.95047 0.90738 0.91469 0.91338 0.95849 0.95118 0.90987 0.91650 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.13 16 3 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.96 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.91 -29.09 13.96 55.43 0.77 -28.32 16 10 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 14 N -0.68 -10.39 5.70 -106.72 -0.61 -11.00 16 15 C 0.06 0.77 5.48 -3.82 -0.02 0.75 16 16 C -0.12 -1.32 5.24 -26.74 -0.14 -1.46 16 17 C -0.11 -1.04 4.69 -26.73 -0.13 -1.16 16 18 C -0.09 -0.77 2.25 -90.49 -0.20 -0.97 16 19 C -0.11 -1.11 5.08 -26.65 -0.14 -1.25 16 20 C 0.05 0.50 5.46 -3.83 -0.02 0.48 16 21 N -0.54 -4.95 4.91 -242.96 -1.19 -6.15 16 22 C 0.02 0.18 9.59 60.06 0.58 0.76 16 23 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 24 C -0.11 -0.91 5.38 -26.65 -0.14 -1.05 16 25 H 0.05 0.70 8.13 -51.92 -0.42 0.27 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 31 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.34 4.68 8.47 -39.29 -0.33 4.35 16 34 H 0.02 0.24 7.44 -51.93 -0.39 -0.14 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.07 0.95 6.64 -51.93 -0.34 0.61 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.75 6.70 -51.93 -0.35 0.41 16 43 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -31.80 386.72 -11.17 -42.97 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -10.56 Total: -0.98 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.74 Total: -20.42 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.03 Total: -45.46 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.80 -11.17 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.696 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds