Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 C 1.53003 * 109.46968 * 239.99736 * 2 1 3 5 5 C 1.52999 * 109.47128 * 175.00230 * 4 2 1 6 6 C 1.50696 * 109.47159 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00167 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99631 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00096 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46799 * 90.00074 * 10 8 6 12 12 H 1.48501 * 109.47121 * 210.00237 * 10 8 6 13 13 H 1.48504 * 109.47129 * 329.99982 * 10 8 6 14 14 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 15 15 C 1.46898 * 110.99673 * 274.99491 * 14 2 1 16 16 C 1.53006 * 109.47006 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47131 * 180.02562 * 17 16 15 19 19 C 1.53121 * 109.52119 * 294.67795 * 18 17 16 20 20 C 1.53040 * 109.27963 * 182.44079 * 19 18 17 21 21 N 1.46846 * 109.52021 * 59.18119 * 20 19 18 22 22 C 1.46908 * 110.99607 * 174.16350 * 21 20 19 23 23 C 1.46839 * 111.20029 * 298.25615 * 21 20 19 24 24 C 1.53034 * 109.52430 * 61.74481 * 23 21 20 25 25 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 26 26 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 27 27 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47042 * 295.00086 * 4 2 1 29 29 H 1.09005 * 109.46914 * 54.99979 * 4 2 1 30 30 H 1.08998 * 109.47265 * 300.00299 * 5 4 2 31 31 H 1.09004 * 109.46703 * 59.99896 * 5 4 2 32 32 H 0.97001 * 119.99448 * 180.02562 * 9 8 6 33 33 H 1.00897 * 110.99542 * 151.04632 * 14 2 1 34 34 H 1.09001 * 109.47392 * 60.00807 * 15 14 2 35 35 H 1.09001 * 109.47520 * 300.00529 * 15 14 2 36 36 H 1.09001 * 109.47002 * 299.99782 * 16 15 14 37 37 H 1.08993 * 109.46955 * 60.00219 * 16 15 14 38 38 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 39 39 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 40 40 H 1.08991 * 109.52897 * 54.86830 * 18 17 16 41 41 H 1.08999 * 109.50916 * 302.38448 * 19 18 17 42 42 H 1.09007 * 109.50284 * 62.50402 * 19 18 17 43 43 H 1.08999 * 109.46046 * 299.16876 * 20 19 18 44 44 H 1.08996 * 109.46181 * 179.20086 * 20 19 18 45 45 H 1.08995 * 109.46831 * 184.21319 * 22 21 20 46 46 H 1.09003 * 109.46581 * 304.20623 * 22 21 20 47 47 H 1.08995 * 109.47301 * 64.20668 * 22 21 20 48 48 H 1.09001 * 109.46335 * 301.73016 * 23 21 20 49 49 H 1.09006 * 109.45662 * 181.75355 * 23 21 20 50 50 H 1.08998 * 109.50703 * 180.87978 * 24 23 21 51 51 H 1.09002 * 109.53548 * 60.77692 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0671 -1.3233 -2.5444 7 1 3.3686 -1.8038 -3.2135 8 6 5.4183 -1.3595 -2.8163 9 7 6.2689 -0.7748 -2.0013 10 14 6.0409 -2.2401 -4.3416 11 1 6.0901 -1.2861 -5.4784 12 1 7.4025 -2.7739 -4.0838 13 1 5.1249 -3.3605 -4.6749 14 7 2.0196 -0.6926 1.1995 15 6 2.0825 0.2226 2.3468 16 6 2.5962 -0.5329 3.5742 17 6 2.6610 0.4200 4.7694 18 6 3.1753 -0.3353 5.9965 19 6 2.1605 -1.4091 6.3988 20 6 2.6512 -2.1201 7.6621 21 7 2.8107 -1.1415 8.7453 22 6 3.1474 -1.8074 10.0108 23 6 3.8151 -0.1272 8.4010 24 6 3.3592 0.6433 7.1599 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -1.7716 -1.2055 29 1 1.6053 -0.2618 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9994 -1.0730 -0.4259 32 1 7.2195 -0.7999 -2.1928 33 1 2.9172 -1.1205 1.0287 34 1 1.0871 0.6163 2.5526 35 1 2.7588 1.0462 2.1182 36 1 1.9200 -1.3567 3.8031 37 1 3.5915 -0.9263 3.3683 38 1 3.3369 1.2441 4.5409 39 1 1.6654 0.8132 4.9751 40 1 4.1302 -0.8052 5.7614 41 1 1.1954 -0.9423 6.5956 42 1 2.0572 -2.1332 5.5906 43 1 3.6098 -2.5982 7.4606 44 1 1.9240 -2.8756 7.9593 45 1 3.1863 -1.0684 10.8110 46 1 2.3873 -2.5537 10.2421 47 1 4.1182 -2.2942 9.9182 48 1 4.7682 -0.6148 8.1960 49 1 3.9330 0.5647 9.2350 50 1 4.1122 1.3856 6.8953 51 1 2.4131 1.1429 7.3681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -41.744894 kcal Electronic energy + Delta-G solvation = -22334.398839 eV Core-core repulsion = 19266.587624 eV Total energy + Delta-G solvation = -3067.811215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43443 -37.39332 -35.61748 -33.43545 -32.36437 -31.06969 -30.10263 -29.02124 -26.94173 -25.16994 -24.24152 -23.42319 -21.99111 -21.24815 -20.78971 -19.82715 -19.35568 -16.41497 -16.09049 -15.64937 -15.31767 -15.15794 -14.89074 -14.52565 -14.44647 -14.02084 -13.97855 -13.17747 -13.14655 -12.68864 -12.61267 -12.52673 -12.44971 -12.10486 -11.92229 -11.78822 -11.52149 -11.39861 -11.31056 -11.23491 -11.03023 -10.89472 -10.81404 -10.58501 -10.47026 -10.37189 -10.18089 -10.01358 -9.72408 -9.25700 -9.01392 -8.61049 -8.35472 -7.91016 -6.00509 -4.02416 3.31829 3.38008 3.41821 3.66992 4.42213 4.46007 4.59380 4.62292 4.77278 4.90053 5.07982 5.08435 5.16802 5.23849 5.27098 5.35187 5.39706 5.41146 5.51197 5.54076 5.55037 5.57248 5.63220 5.70186 5.80887 5.83501 5.90349 5.90692 5.96878 5.99410 6.06098 6.09553 6.21008 6.27692 6.39256 6.44071 6.46116 6.54981 6.60811 6.79428 6.81803 6.94662 7.11023 7.58397 7.63591 7.82085 7.95585 8.01735 8.43131 9.04433 9.61686 11.10759 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.002628 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.570883 B =10652.242512 C =11521.139534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.689 5.689 15 C 0.060 3.940 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.089 4.089 19 C -0.112 4.112 20 C 0.054 3.946 21 N -0.544 5.544 22 C 0.024 3.976 23 C 0.055 3.945 24 C -0.112 4.112 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.351 0.649 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 1.339 21.568 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.323 5.323 15 C -0.070 4.070 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.107 4.107 19 C -0.150 4.150 20 C -0.074 4.074 21 N -0.269 5.269 22 C -0.124 4.124 23 C -0.073 4.073 24 C -0.150 4.150 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.537 1.352 21.816 23.466 hybrid contribution 2.104 -0.306 -1.133 2.409 sum -6.433 1.046 20.683 21.685 Atomic orbital electron populations 1.21786 0.95870 1.01622 1.00075 1.21589 0.94440 0.96038 0.90703 0.94616 1.21832 0.99629 0.99434 0.94373 1.19123 0.88839 0.96806 0.96886 1.21248 0.91945 1.34188 1.08269 0.92665 1.25033 0.97093 0.95657 0.96721 1.69966 1.02350 1.44283 1.36989 0.86596 0.78125 0.79973 0.83334 1.20713 1.21248 1.19846 1.60609 1.34593 1.32661 1.04484 1.21949 0.99768 0.94191 0.91091 1.21606 1.01638 0.98666 0.93681 1.21560 1.01203 0.98178 0.93883 1.21212 0.98989 0.95987 0.94530 1.21694 0.99261 0.98060 0.95996 1.22132 0.99844 0.93868 0.91529 1.61945 1.46824 1.14951 1.03181 1.22350 0.99289 0.98868 0.91878 1.22101 0.92601 0.94382 0.98191 1.21650 1.01990 0.97630 0.93724 0.93847 0.93129 0.92437 0.92497 0.92812 0.97029 0.96654 0.93058 0.82781 0.91850 0.95706 0.91130 0.92075 0.92079 0.91968 0.91457 0.91132 0.90884 0.94967 0.90892 0.91481 0.91432 0.95807 0.94989 0.90983 0.91509 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.41 37.16 0.35 -1.71 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.41 4.74 -26.73 -0.13 -2.54 16 5 C 0.02 0.53 4.80 -27.89 -0.13 0.40 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 7 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.69 -11.83 6.31 -106.72 -0.67 -12.51 16 15 C 0.06 0.87 5.48 -3.82 -0.02 0.85 16 16 C -0.12 -1.47 5.24 -26.73 -0.14 -1.61 16 17 C -0.11 -1.15 4.69 -26.73 -0.13 -1.27 16 18 C -0.09 -0.86 2.25 -90.49 -0.20 -1.06 16 19 C -0.11 -1.06 5.08 -26.65 -0.14 -1.19 16 20 C 0.05 0.49 5.46 -3.83 -0.02 0.47 16 21 N -0.54 -4.97 4.91 -242.96 -1.19 -6.16 16 22 C 0.02 0.18 9.59 60.07 0.58 0.76 16 23 C 0.06 0.48 5.46 -3.84 -0.02 0.46 16 24 C -0.11 -0.99 5.38 -26.65 -0.14 -1.14 16 25 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.35 6.68 6.47 -39.29 -0.25 6.43 16 34 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 35 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 36 H 0.07 0.87 6.64 -51.93 -0.34 0.53 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.70 6.71 -51.93 -0.35 0.35 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -29.54 387.78 -11.49 -41.02 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -10.44 Total: 1.14 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.74 Total: -19.88 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.13 Total: -44.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.54 -11.49 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.721 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds