Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46894 * 2 1 4 4 C 1.53004 * 109.47032 * 240.00124 * 2 1 3 5 5 C 1.52999 * 109.47197 * 174.99986 * 4 2 1 6 6 C 1.50702 * 109.47013 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00010 * 359.71809 * 6 5 4 8 8 C 1.37879 * 119.99378 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00693 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99571 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46928 * 90.00168 * 10 8 6 12 12 H 1.48499 * 109.47152 * 210.00384 * 10 8 6 13 13 H 1.48506 * 109.47118 * 330.00134 * 10 8 6 14 14 N 1.46901 * 109.47030 * 120.00631 * 2 1 3 15 15 C 1.46899 * 110.99541 * 282.75361 * 14 2 1 16 16 H 1.08993 * 109.47510 * 338.76718 * 15 14 2 17 17 C 1.53007 * 109.46957 * 98.76822 * 15 14 2 18 18 C 1.53002 * 109.47241 * 218.76558 * 15 14 2 19 19 N 1.46899 * 109.46729 * 55.00334 * 18 15 14 20 20 C 1.46843 * 111.00244 * 45.79366 * 19 18 15 21 21 C 1.53042 * 109.52606 * 185.84003 * 20 19 18 22 22 C 1.53122 * 109.27484 * 300.81735 * 21 20 19 23 23 C 1.52994 * 109.57438 * 177.58983 * 22 21 20 24 24 C 1.53117 * 109.16098 * 57.65323 * 22 21 20 25 25 C 1.46851 * 110.99898 * 170.00333 * 19 18 15 26 26 H 1.08999 * 109.47168 * 67.02264 * 1 2 3 27 27 H 1.09001 * 109.47068 * 187.02516 * 1 2 3 28 28 H 1.08994 * 109.46996 * 307.02394 * 1 2 3 29 29 H 1.09003 * 109.46644 * 55.00142 * 4 2 1 30 30 H 1.08998 * 109.47133 * 295.00270 * 4 2 1 31 31 H 1.08995 * 109.47055 * 59.99870 * 5 4 2 32 32 H 1.09009 * 109.46819 * 300.00156 * 5 4 2 33 33 H 0.96996 * 120.00476 * 179.97438 * 9 8 6 34 34 H 1.00901 * 110.99515 * 158.80802 * 14 2 1 35 35 H 1.09002 * 109.46878 * 56.19882 * 17 15 14 36 36 H 1.08996 * 109.46747 * 176.19201 * 17 15 14 37 37 H 1.08998 * 109.47077 * 296.19492 * 17 15 14 38 38 H 1.09000 * 109.47238 * 175.00489 * 18 15 14 39 39 H 1.08997 * 109.47073 * 295.00436 * 18 15 14 40 40 H 1.08997 * 109.46032 * 305.85095 * 20 19 18 41 41 H 1.08998 * 109.46427 * 65.81971 * 20 19 18 42 42 H 1.09000 * 109.50390 * 180.87719 * 21 20 19 43 43 H 1.08995 * 109.50341 * 60.75751 * 21 20 19 44 44 H 1.09001 * 109.52144 * 297.74945 * 22 21 20 45 45 H 1.08999 * 109.47141 * 300.28813 * 23 22 21 46 46 H 1.09004 * 109.46968 * 60.28478 * 23 22 21 47 47 H 1.08998 * 109.47520 * 180.28566 * 23 22 21 48 48 H 1.09001 * 109.50568 * 182.40452 * 24 22 21 49 49 H 1.09005 * 109.50155 * 62.28822 * 24 22 21 50 50 H 1.09005 * 109.46165 * 294.17369 * 25 19 18 51 51 H 1.08998 * 109.46631 * 54.15335 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3690 -1.8071 -3.2115 8 6 5.4183 -1.3592 -2.8164 9 7 6.2688 -0.7737 -2.0020 10 14 6.0410 -2.2397 -4.3417 11 1 6.0902 -1.2856 -5.4786 12 1 7.4025 -2.7734 -4.0840 13 1 5.1250 -3.3601 -4.6751 14 7 2.0197 -0.6926 1.1994 15 6 1.9097 0.1671 2.3854 16 1 1.8552 1.2102 2.0743 17 6 0.6453 -0.1992 3.1653 18 6 3.1359 -0.0356 3.2778 19 7 4.3559 0.2006 2.4943 20 6 4.2370 1.4241 1.6911 21 6 5.4606 1.5602 0.7821 22 6 6.7261 1.6132 1.6425 23 6 7.9579 1.6888 0.7383 24 6 6.8009 0.3500 2.5047 25 6 5.5384 0.2490 3.3637 26 1 -0.3633 0.4012 -0.9461 27 1 -0.3633 -1.0200 0.1257 28 1 -0.3633 0.6188 0.8204 29 1 1.6054 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 3.9994 -1.0728 -0.4261 32 1 3.8532 0.4371 -1.3574 33 1 7.2194 -0.7994 -2.1930 34 1 2.9683 -1.0116 1.0707 35 1 0.6688 -1.2593 3.4182 36 1 0.5988 0.3915 4.0801 37 1 -0.2323 0.0090 2.5532 38 1 3.0982 0.6653 4.1117 39 1 3.1419 -1.0560 3.6608 40 1 3.3354 1.3717 1.0809 41 1 4.1779 2.2885 2.3525 42 1 5.3795 2.4765 0.1973 43 1 5.5125 0.7029 0.1110 44 1 6.6923 2.4921 2.2863 45 1 7.9897 0.8107 0.0934 46 1 7.9038 2.5883 0.1250 47 1 8.8580 1.7214 1.3523 48 1 7.6774 0.4017 3.1506 49 1 6.8740 -0.5263 1.8606 50 1 5.4734 1.1189 4.0173 51 1 5.5822 -0.6570 3.9681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = -24.355589 kcal Electronic energy + Delta-G solvation = -24896.098917 eV Core-core repulsion = 21829.041759 eV Total energy + Delta-G solvation = -3067.057158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.39541 -37.21631 -34.82267 -33.09158 -32.08234 -30.43995 -29.32135 -28.35143 -27.91692 -24.88287 -24.55935 -22.92004 -21.66310 -21.37919 -19.85372 -19.44875 -19.02404 -16.28914 -15.86057 -15.45213 -15.16787 -14.51914 -14.31036 -14.23983 -13.85508 -13.62866 -13.46321 -12.85207 -12.55953 -12.41725 -12.29507 -12.14931 -11.98977 -11.85327 -11.64467 -11.44237 -11.25574 -11.22476 -11.08694 -10.93279 -10.80300 -10.63262 -10.59851 -10.39900 -10.06689 -9.99893 -9.81450 -9.69425 -9.56270 -9.10513 -8.88255 -8.23868 -7.97245 -7.80661 -5.90450 -3.90168 3.36464 3.43143 3.47034 4.14111 4.53534 4.68525 4.99452 5.18931 5.21785 5.29529 5.45197 5.47259 5.52393 5.61461 5.63615 5.68246 5.74089 5.77395 5.80114 5.85277 5.90709 5.97008 6.05519 6.06488 6.08694 6.15026 6.19373 6.28466 6.29748 6.41042 6.44446 6.54373 6.54972 6.60555 6.63952 6.70383 6.72550 6.88529 7.03420 7.20508 7.30707 7.41130 7.50796 7.72028 7.78406 7.97477 8.10011 8.24617 8.55525 9.14699 9.72149 11.19252 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.007525 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.272485 B = 3720.247604 C = 5656.526206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.031 0.969 4 C -0.114 4.114 5 C 0.025 3.975 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.062 3.938 9 N -0.884 5.884 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.678 5.678 15 C 0.081 3.919 16 H 0.045 0.955 17 C -0.139 4.139 18 C 0.047 3.953 19 N -0.529 5.529 20 C 0.052 3.948 21 C -0.125 4.125 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.111 4.111 25 C 0.063 3.937 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.012 0.988 33 H 0.257 0.743 34 H 0.369 0.631 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.040 0.960 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.023 0.977 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 4.961 11.510 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.049 0.951 4 C -0.152 4.152 5 C -0.012 4.012 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.139 4.139 9 N -0.523 5.523 10 Si 0.713 3.287 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.202 1.202 14 N -0.316 5.316 15 C -0.029 4.029 16 H 0.063 0.937 17 C -0.198 4.198 18 C -0.081 4.081 19 N -0.254 5.254 20 C -0.075 4.075 21 C -0.162 4.162 22 C -0.102 4.102 23 C -0.200 4.200 24 C -0.148 4.148 25 C -0.065 4.065 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.194 0.806 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.041 0.959 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.069 4.268 11.327 12.770 hybrid contribution 1.038 0.955 -0.404 1.467 sum -3.031 5.222 10.923 12.481 Atomic orbital electron populations 1.21926 0.96244 1.01613 1.00028 1.21652 0.94109 0.95502 0.91277 0.95134 1.21806 1.00169 0.99312 0.93884 1.19135 0.88392 0.96695 0.96992 1.21233 0.91885 1.34146 1.08414 0.93160 1.24914 0.97069 0.95658 0.96284 1.69889 1.01992 1.44012 1.36433 0.86728 0.78070 0.80026 0.83889 1.21025 1.21430 1.20155 1.60676 1.31318 1.38167 1.01479 1.21613 0.93684 0.95568 0.92059 0.93739 1.21893 0.97587 1.01659 0.98620 1.22442 0.89615 1.01334 0.94743 1.61870 1.01958 1.37093 1.24460 1.22282 1.00439 0.89051 0.95732 1.21861 0.91701 1.04636 0.98011 1.21050 0.96052 0.96597 0.96528 1.21769 0.96125 1.02811 0.99340 1.21631 0.95429 0.99590 0.98189 1.22006 0.90783 0.99610 0.94051 0.93260 0.92284 0.93823 0.93269 0.92680 0.95671 0.96991 0.93368 0.80608 0.92165 0.93720 0.92306 0.95229 0.90240 0.90227 0.96626 0.92830 0.86075 0.93366 0.90885 0.93422 0.94053 0.92540 0.90091 0.95866 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.71 37.16 0.32 -1.77 16 2 C 0.08 1.47 2.22 -67.71 -0.15 1.32 16 3 H 0.03 0.56 6.07 -51.93 -0.31 0.25 16 4 C -0.11 -2.37 4.79 -26.73 -0.13 -2.50 16 5 C 0.02 0.61 4.27 -27.88 -0.12 0.49 16 6 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.88 -24.48 13.02 55.43 0.72 -23.76 16 10 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.68 -11.50 5.87 -99.73 -0.59 -12.09 16 15 C 0.08 1.17 1.87 -67.71 -0.13 1.04 16 16 H 0.04 0.67 5.89 -51.93 -0.31 0.37 16 17 C -0.14 -1.72 9.31 37.16 0.35 -1.37 16 18 C 0.05 0.65 4.81 -3.82 -0.02 0.64 16 19 N -0.53 -8.31 3.77 -234.67 -0.89 -9.19 16 20 C 0.05 0.86 4.72 -3.83 -0.02 0.84 16 21 C -0.12 -2.25 5.38 -26.65 -0.14 -2.39 16 22 C -0.08 -1.32 2.79 -90.50 -0.25 -1.57 16 23 C -0.14 -2.26 9.20 37.15 0.34 -1.92 16 24 C -0.11 -1.66 5.38 -26.65 -0.14 -1.81 16 25 C 0.06 0.90 5.42 -3.83 -0.02 0.88 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.59 6.22 -51.93 -0.32 0.27 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.66 6.41 -51.93 -0.33 0.32 16 32 H 0.01 0.31 7.63 -51.92 -0.40 -0.09 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.37 7.15 5.04 -39.29 -0.20 6.96 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.73 5.85 -51.93 -0.30 0.42 16 38 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.40 3.63 -51.93 -0.19 1.21 16 41 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.12 2.69 6.80 -51.93 -0.35 2.34 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 50 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -26.54 373.03 -10.53 -37.07 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -9.86 Total: 7.04 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -0.52 Total: -21.14 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.75 Total: -45.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.54 -10.53 -37.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.713 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds