Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47333 * 2 1 4 4 C 1.53001 * 109.47222 * 120.00625 * 2 1 3 5 5 C 1.53002 * 109.47086 * 184.99891 * 4 2 1 6 6 C 1.50700 * 109.46974 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99795 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00134 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99924 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46630 * 90.00045 * 10 8 6 12 12 H 1.48500 * 109.47298 * 209.99966 * 10 8 6 13 13 H 1.48503 * 109.47155 * 330.00432 * 10 8 6 14 14 N 1.46900 * 109.46783 * 240.00005 * 2 1 3 15 15 C 1.46898 * 110.99932 * 86.95418 * 14 2 1 16 16 H 1.09000 * 109.47155 * 317.26719 * 15 14 2 17 17 C 1.53005 * 109.47389 * 77.27248 * 15 14 2 18 18 C 1.52998 * 109.47168 * 197.27149 * 15 14 2 19 19 N 1.46899 * 109.47267 * 54.42144 * 18 15 14 20 20 C 1.46841 * 111.00066 * 52.21909 * 19 18 15 21 21 C 1.53036 * 109.52586 * 185.84098 * 20 19 18 22 22 C 1.53127 * 109.27595 * 300.82164 * 21 20 19 23 23 C 1.53003 * 109.57054 * 177.59086 * 22 21 20 24 24 C 1.53116 * 109.15889 * 57.65444 * 22 21 20 25 25 C 1.46849 * 111.00078 * 176.42901 * 19 18 15 26 26 H 1.09002 * 109.47316 * 173.76784 * 1 2 3 27 27 H 1.09002 * 109.47202 * 293.76370 * 1 2 3 28 28 H 1.08995 * 109.47306 * 53.76472 * 1 2 3 29 29 H 1.09006 * 109.46766 * 304.99590 * 4 2 1 30 30 H 1.08995 * 109.47536 * 64.99305 * 4 2 1 31 31 H 1.08992 * 109.47090 * 299.99673 * 5 4 2 32 32 H 1.09002 * 109.47038 * 59.99892 * 5 4 2 33 33 H 0.97005 * 120.00180 * 180.02562 * 9 8 6 34 34 H 1.00901 * 111.00172 * 322.99779 * 14 2 1 35 35 H 1.08997 * 109.46923 * 59.99584 * 17 15 14 36 36 H 1.08997 * 109.46902 * 180.02562 * 17 15 14 37 37 H 1.09005 * 109.46379 * 299.99817 * 17 15 14 38 38 H 1.09002 * 109.47058 * 294.41967 * 18 15 14 39 39 H 1.09005 * 109.47291 * 174.42150 * 18 15 14 40 40 H 1.08997 * 109.46419 * 305.85708 * 20 19 18 41 41 H 1.09002 * 109.46146 * 65.82284 * 20 19 18 42 42 H 1.09004 * 109.50490 * 180.88152 * 21 20 19 43 43 H 1.08994 * 109.50563 * 60.76087 * 21 20 19 44 44 H 1.09003 * 109.52139 * 297.74805 * 22 21 20 45 45 H 1.09002 * 109.47073 * 300.28298 * 23 22 21 46 46 H 1.08996 * 109.47069 * 60.28911 * 23 22 21 47 47 H 1.09000 * 109.46651 * 180.28454 * 23 22 21 48 48 H 1.09000 * 109.49922 * 182.40291 * 24 22 21 49 49 H 1.08999 * 109.50269 * 62.28627 * 24 22 21 50 50 H 1.09000 * 109.46264 * 294.17821 * 25 19 18 51 51 H 1.09005 * 109.45830 * 54.15716 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5443 7 1 3.3685 -1.8033 3.2138 8 6 5.4184 -1.3604 2.8155 9 7 6.2689 -0.7757 2.0006 10 14 6.0410 -2.2399 4.3415 11 1 6.3203 -3.6613 4.0142 12 1 7.2877 -1.5868 4.8152 13 1 5.0099 -2.1709 5.4079 14 7 2.0195 -0.6925 -1.1995 15 6 2.1263 0.2332 -2.3351 16 1 1.2477 0.8778 -2.3622 17 6 3.3835 1.0909 -2.1776 18 6 2.2134 -0.5651 -3.6374 19 7 1.0727 -1.4866 -3.7241 20 6 -0.1955 -0.7747 -3.5212 21 6 -1.3459 -1.7827 -3.4731 22 6 -1.3847 -2.5686 -4.7868 23 6 -2.4947 -3.6197 -4.7226 24 6 -0.0356 -3.2613 -4.9979 25 6 1.0768 -2.2103 -5.0019 26 1 -0.3634 -1.0216 -0.1116 27 1 -0.3634 0.4141 0.9405 28 1 -0.3634 0.6074 -0.8289 29 1 1.6054 -0.2619 2.1370 30 1 1.7516 -1.7716 1.2055 31 1 3.9994 -1.0729 0.4259 32 1 3.8532 0.4368 1.3573 33 1 7.2197 -0.8020 2.1912 34 1 1.4308 -1.4793 -1.4284 35 1 4.2620 0.4462 -2.1504 36 1 3.4624 1.7780 -3.0200 37 1 3.3213 1.6596 -1.2497 38 1 3.1426 -1.1347 -3.6528 39 1 2.1928 0.1195 -4.4853 40 1 -0.1562 -0.2233 -2.5818 41 1 -0.3568 -0.0785 -4.3443 42 1 -2.2888 -1.2527 -3.3382 43 1 -1.1924 -2.4708 -2.6419 44 1 -1.5771 -1.8857 -5.6142 45 1 -2.3027 -4.3008 -3.8935 46 1 -3.4546 -3.1257 -4.5723 47 1 -2.5175 -4.1814 -5.6564 48 1 -0.0423 -3.7877 -5.9524 49 1 0.1386 -3.9726 -4.1906 50 1 0.9095 -1.5074 -5.8180 51 1 2.0402 -2.7019 -5.1377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = -27.742947 kcal Electronic energy + Delta-G solvation = -23780.794940 eV Core-core repulsion = 20713.590895 eV Total energy + Delta-G solvation = -3067.204045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65483 -37.46234 -35.03984 -33.20176 -32.17888 -30.99402 -29.58984 -28.39854 -27.72225 -25.15009 -24.78440 -23.43278 -22.10221 -21.23272 -20.03484 -19.66753 -19.47835 -16.15663 -16.04809 -15.81891 -15.18589 -14.77821 -14.67781 -14.38482 -14.27095 -13.90992 -13.60409 -13.26511 -12.80598 -12.64870 -12.48784 -12.31066 -12.21158 -12.02304 -11.91111 -11.70069 -11.56077 -11.36225 -11.25193 -11.12746 -11.02516 -10.84259 -10.80728 -10.60087 -10.41079 -10.37974 -10.10431 -10.01136 -9.49659 -9.09752 -8.80788 -8.34078 -8.15357 -7.64529 -5.81578 -3.81917 3.41716 3.47392 3.50893 3.80567 4.54701 4.59372 4.60042 4.62632 4.69316 4.97050 5.13053 5.20984 5.26998 5.32863 5.36457 5.44579 5.45985 5.48533 5.53118 5.53899 5.61482 5.63958 5.68852 5.72590 5.79411 5.80949 5.87123 5.95573 5.99079 6.01894 6.04216 6.12106 6.21982 6.27805 6.38494 6.42570 6.54233 6.75436 6.81364 7.02401 7.06114 7.06346 7.44038 7.74558 7.93160 8.15454 8.18468 8.34273 8.66537 9.27461 9.80106 11.29420 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.003576 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.461015 B = 7828.029511 C = 8004.567908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.096 4.096 5 C 0.032 3.968 6 C -0.516 4.516 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.661 5.661 15 C 0.088 3.912 16 H 0.030 0.970 17 C -0.141 4.141 18 C 0.057 3.943 19 N -0.533 5.533 20 C 0.044 3.956 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.146 4.146 24 C -0.111 4.111 25 C 0.058 3.942 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.005 0.995 33 H 0.257 0.743 34 H 0.349 0.651 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.028 0.972 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 -0.331 -16.583 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.087 0.913 4 C -0.135 4.135 5 C -0.005 4.005 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.295 5.295 15 C -0.022 4.022 16 H 0.047 0.953 17 C -0.199 4.199 18 C -0.070 4.070 19 N -0.258 5.258 20 C -0.084 4.084 21 C -0.149 4.149 22 C -0.112 4.112 23 C -0.203 4.203 24 C -0.149 4.149 25 C -0.070 4.070 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.046 0.954 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.695 -0.589 -16.067 21.781 hybrid contribution -0.592 0.315 -0.037 0.671 sum -15.286 -0.275 -16.103 22.205 Atomic orbital electron populations 1.22580 0.99038 1.01170 1.00992 1.21748 0.90559 0.98316 0.92125 0.91331 1.21601 1.00550 0.98353 0.92955 1.18968 0.88354 0.96258 0.96916 1.21380 0.91797 1.33823 1.08464 0.93217 1.24985 0.97160 0.95838 0.96453 1.69980 1.02037 1.44494 1.36982 0.86708 0.78219 0.79864 0.83838 1.20829 1.21441 1.20092 1.60493 1.56973 1.09707 1.02297 1.21483 0.97067 0.93396 0.90250 0.95254 1.21797 0.98188 0.99090 1.00839 1.22309 0.94362 0.94158 0.96219 1.61873 1.02309 1.28434 1.33213 1.22293 0.89526 0.95364 1.01221 1.21647 0.97180 0.98126 0.97951 1.21176 0.95148 0.97084 0.97785 1.21810 0.98011 0.98763 1.01737 1.21647 0.93494 0.97839 1.01935 1.22043 0.99561 0.95919 0.89456 0.92777 0.92470 0.94035 0.93921 0.93587 0.94792 0.97688 0.93367 0.82989 0.91205 0.93686 0.92139 0.89507 0.95037 0.89922 0.95502 0.91923 0.90836 0.91933 0.92432 0.92908 0.92902 0.91840 0.90774 0.95382 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.52 37.16 0.32 -2.19 16 2 C 0.08 1.42 2.40 -67.71 -0.16 1.26 16 3 H 0.07 1.24 6.56 -51.93 -0.34 0.90 16 4 C -0.10 -2.06 4.83 -26.73 -0.13 -2.19 16 5 C 0.03 0.86 4.86 -27.88 -0.14 0.72 16 6 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 10 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -11.00 5.38 -99.74 -0.54 -11.54 16 15 C 0.09 1.26 1.88 -67.71 -0.13 1.13 16 16 H 0.03 0.41 5.82 -51.93 -0.30 0.10 16 17 C -0.14 -2.14 9.32 37.16 0.35 -1.80 16 18 C 0.06 0.72 4.80 -3.83 -0.02 0.70 16 19 N -0.53 -6.20 3.68 -234.67 -0.86 -7.07 16 20 C 0.04 0.47 4.77 -3.84 -0.02 0.45 16 21 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 22 C -0.09 -0.80 2.79 -90.49 -0.25 -1.05 16 23 C -0.15 -1.10 9.21 37.16 0.34 -0.76 16 24 C -0.11 -1.00 5.38 -26.65 -0.14 -1.14 16 25 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 26 H 0.05 0.74 8.01 -51.93 -0.42 0.32 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.52 6.29 -51.93 -0.33 0.19 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 32 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.35 5.65 6.71 -39.29 -0.26 5.39 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.01 6.91 -51.93 -0.36 0.65 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.96 3.62 -51.93 -0.19 0.78 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.08 0.77 8.12 -51.93 -0.42 0.34 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -30.34 379.76 -10.69 -41.03 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -10.17 Total: 0.93 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.56 Total: -19.46 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.67 Total: -45.61 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.34 -10.69 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.286 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds