Wall clock time and date at job start Tue Mar 31 2020 05:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47545 * 2 1 4 4 C 1.53002 * 109.47186 * 239.99651 * 2 1 3 5 5 C 1.53000 * 109.47190 * 174.99998 * 4 2 1 6 6 C 1.50700 * 109.47025 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99995 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99954 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47409 * 89.99892 * 10 8 6 12 12 H 1.48509 * 109.47001 * 210.00019 * 10 8 6 13 13 H 1.48501 * 109.47064 * 329.99440 * 10 8 6 14 14 N 1.46905 * 109.47097 * 119.99626 * 2 1 3 15 15 C 1.46900 * 110.99977 * 275.00058 * 14 2 1 16 16 H 1.08991 * 109.47118 * 34.99650 * 15 14 2 17 17 C 1.53006 * 109.46916 * 274.99671 * 15 14 2 18 18 C 1.53000 * 109.47017 * 155.00200 * 15 14 2 19 19 N 1.46901 * 109.46769 * 304.99554 * 18 15 14 20 20 C 1.46839 * 111.00222 * 294.21135 * 19 18 15 21 21 C 1.53034 * 109.52552 * 174.16216 * 20 19 18 22 22 C 1.53123 * 109.28182 * 59.17780 * 21 20 19 23 23 C 1.52997 * 109.58011 * 182.41262 * 22 21 20 24 24 C 1.53120 * 109.16070 * 302.35293 * 22 21 20 25 25 C 1.46849 * 110.99649 * 169.99929 * 19 18 15 26 26 H 1.09001 * 109.46752 * 300.00261 * 1 2 3 27 27 H 1.09003 * 109.46784 * 60.00062 * 1 2 3 28 28 H 1.08999 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46898 * 295.00139 * 4 2 1 30 30 H 1.08996 * 109.46886 * 54.99920 * 4 2 1 31 31 H 1.08997 * 109.47365 * 300.00379 * 5 4 2 32 32 H 1.09007 * 109.46857 * 59.99898 * 5 4 2 33 33 H 0.96997 * 120.00255 * 180.02562 * 9 8 6 34 34 H 1.00900 * 110.99959 * 151.04431 * 14 2 1 35 35 H 1.09001 * 109.47241 * 299.99904 * 17 15 14 36 36 H 1.08996 * 109.46751 * 60.00267 * 17 15 14 37 37 H 1.09002 * 109.46824 * 180.02562 * 17 15 14 38 38 H 1.09002 * 109.47398 * 64.99849 * 18 15 14 39 39 H 1.09001 * 109.47194 * 185.00030 * 18 15 14 40 40 H 1.09006 * 109.46266 * 294.17473 * 20 19 18 41 41 H 1.09002 * 109.46276 * 54.14664 * 20 19 18 42 42 H 1.09006 * 109.50444 * 299.24199 * 21 20 19 43 43 H 1.09002 * 109.53860 * 179.13912 * 21 20 19 44 44 H 1.09005 * 109.51783 * 62.25186 * 22 21 20 45 45 H 1.08990 * 109.47113 * 179.71899 * 23 22 21 46 46 H 1.09006 * 109.46532 * 299.71509 * 23 22 21 47 47 H 1.08997 * 109.47310 * 59.71184 * 23 22 21 48 48 H 1.09005 * 109.50142 * 297.71204 * 24 22 21 49 49 H 1.08993 * 109.53791 * 177.61458 * 24 22 21 50 50 H 1.08991 * 109.46839 * 305.85721 * 25 19 18 51 51 H 1.09005 * 109.46224 * 65.84006 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0672 -1.3244 -2.5437 7 1 3.3687 -1.8048 -3.2128 8 6 5.4185 -1.3616 -2.8150 9 7 6.2691 -0.7770 -1.9999 10 14 6.0412 -2.2423 -4.3400 11 1 6.0918 -1.2881 -5.4768 12 1 7.4023 -2.7772 -4.0817 13 1 5.1245 -3.3619 -4.6740 14 7 2.0196 -0.6924 1.1995 15 6 2.0824 0.2227 2.3469 16 1 1.2577 0.9330 2.2906 17 6 3.4112 0.9810 2.3223 18 6 1.9770 -0.5795 3.6455 19 7 0.7588 -1.3999 3.6166 20 6 -0.4436 -0.5571 3.6218 21 6 -1.6845 -1.4350 3.4448 22 6 -1.7487 -2.4554 4.5847 23 6 -2.9539 -3.3758 4.3817 24 6 -0.4636 -3.2879 4.5871 25 6 0.7419 -2.3562 4.7309 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7516 -1.7715 -1.2055 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4368 -1.3573 32 1 3.9994 -1.0729 -0.4258 33 1 7.2198 -0.8028 -2.1908 34 1 2.9173 -1.1205 1.0288 35 1 4.2360 0.2706 2.3786 36 1 3.4862 1.5524 1.3973 37 1 3.4579 1.6597 3.1740 38 1 2.8486 -1.2265 3.7446 39 1 1.9342 0.1048 4.4928 40 1 -0.5087 -0.0232 4.5700 41 1 -0.3872 0.1612 2.8039 42 1 -1.6266 -1.9588 2.4906 43 1 -2.5781 -0.8113 3.4640 44 1 -1.8458 -1.9327 5.5363 45 1 -2.9951 -4.1044 5.1912 46 1 -3.8681 -2.7822 4.3802 47 1 -2.8571 -3.8963 3.4289 48 1 -0.3865 -3.8407 3.6508 49 1 -0.4843 -3.9879 5.4223 50 1 1.6592 -2.9447 4.7185 51 1 0.6710 -1.8139 5.6738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:58 Heat of formation + Delta-G solvation = -31.210789 kcal Electronic energy + Delta-G solvation = -23723.271435 eV Core-core repulsion = 20655.917013 eV Total energy + Delta-G solvation = -3067.354422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.32830 -37.48825 -34.98379 -33.29475 -32.24702 -30.83503 -29.48520 -28.40683 -27.65662 -25.14516 -24.77183 -23.24175 -21.94927 -21.33677 -20.04115 -19.64027 -19.40184 -16.33688 -15.98970 -15.63059 -14.86763 -14.65525 -14.47275 -14.39909 -14.22304 -14.01389 -13.49959 -13.05052 -12.95530 -12.62983 -12.40775 -12.33822 -12.26471 -12.01121 -11.82358 -11.58449 -11.54802 -11.31422 -11.15232 -11.12671 -11.04194 -10.85346 -10.66574 -10.57497 -10.42985 -10.26707 -10.20208 -9.98440 -9.66750 -9.19453 -8.95951 -8.31267 -8.00616 -7.65239 -5.97016 -3.98358 3.34112 3.40326 3.44354 3.99816 4.49159 4.65574 4.71913 4.77140 4.78254 5.09571 5.26690 5.33562 5.35861 5.38816 5.39791 5.48295 5.56076 5.59990 5.62743 5.64711 5.68863 5.72261 5.84251 5.85525 5.88805 5.89393 5.96073 6.05811 6.08181 6.11466 6.17257 6.18998 6.25721 6.34380 6.43571 6.49491 6.51561 6.65946 6.68567 7.03611 7.17955 7.30214 7.32676 7.69215 7.73610 7.90804 8.02216 8.15685 8.47926 9.08541 9.65473 11.14148 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.003550 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.245964 B = 7884.989097 C = 8137.368814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.031 0.969 4 C -0.113 4.113 5 C 0.023 3.977 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.659 5.659 15 C 0.089 3.911 16 H 0.069 0.931 17 C -0.182 4.182 18 C 0.070 3.930 19 N -0.509 5.509 20 C 0.058 3.942 21 C -0.109 4.109 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.110 4.110 25 C 0.056 3.944 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.010 0.990 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.349 0.651 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.019 0.981 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 0.047 15.407 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.025 4.025 3 H 0.049 0.951 4 C -0.151 4.151 5 C -0.014 4.014 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.293 5.293 15 C -0.023 4.023 16 H 0.087 0.913 17 C -0.242 4.242 18 C -0.058 4.058 19 N -0.233 5.233 20 C -0.070 4.070 21 C -0.147 4.147 22 C -0.112 4.112 23 C -0.203 4.203 24 C -0.147 4.147 25 C -0.072 4.072 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.983 -0.460 15.158 21.319 hybrid contribution 1.344 0.651 -0.270 1.517 sum -13.639 0.191 14.888 20.192 Atomic orbital electron populations 1.21793 0.96037 1.01632 0.99461 1.21552 0.94297 0.95792 0.90893 0.95053 1.21798 0.99496 0.99469 0.94336 1.19103 0.88914 0.96607 0.96802 1.21264 0.91890 1.34043 1.08339 0.92758 1.25015 0.97106 0.95677 0.96649 1.69958 1.02281 1.44362 1.36979 0.86622 0.78120 0.79996 0.83431 1.20787 1.21294 1.19860 1.60573 1.34324 1.31191 1.03180 1.21530 0.96057 0.92993 0.91684 0.91335 1.22496 0.98723 1.01099 1.01877 1.22098 0.92818 0.95268 0.95633 1.61722 1.01180 1.17538 1.42851 1.22097 0.90216 0.95113 0.99547 1.21616 0.96515 0.97246 0.99328 1.21170 0.94972 0.96436 0.98580 1.21806 0.97454 0.99277 1.01733 1.21621 0.93423 0.97404 1.02297 1.22067 0.98882 0.94785 0.91451 0.94052 0.93663 0.92288 0.92513 0.93159 0.97183 0.96580 0.93134 0.82930 0.92023 0.92024 0.93087 0.90904 0.95636 0.96325 0.90318 0.90647 0.92292 0.92141 0.93040 0.93011 0.92453 0.90766 0.92186 0.90968 0.96007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.40 37.16 0.35 -1.62 16 2 C 0.08 1.47 2.46 -67.71 -0.17 1.30 16 3 H 0.03 0.57 7.11 -51.93 -0.37 0.20 16 4 C -0.11 -2.36 4.74 -26.73 -0.13 -2.49 16 5 C 0.02 0.58 4.80 -27.88 -0.13 0.45 16 6 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 N -0.66 -10.93 5.78 -99.73 -0.58 -11.51 16 15 C 0.09 1.25 2.18 -67.71 -0.15 1.10 16 16 H 0.07 0.96 5.69 -51.93 -0.30 0.66 16 17 C -0.18 -2.63 9.15 37.16 0.34 -2.29 16 18 C 0.07 0.90 4.66 -3.82 -0.02 0.88 16 19 N -0.51 -6.40 4.38 -234.67 -1.03 -7.43 16 20 C 0.06 0.67 5.29 -3.84 -0.02 0.65 16 21 C -0.11 -1.14 5.38 -26.65 -0.14 -1.28 16 22 C -0.09 -0.88 2.79 -90.50 -0.25 -1.13 16 23 C -0.15 -1.21 9.21 37.16 0.34 -0.87 16 24 C -0.11 -1.11 5.38 -26.65 -0.14 -1.25 16 25 C 0.06 0.63 5.46 -3.83 -0.02 0.60 16 26 H 0.04 0.56 5.77 -51.93 -0.30 0.26 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.02 0.43 6.43 -51.92 -0.33 0.09 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.35 6.61 6.21 -39.29 -0.24 6.36 16 35 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.06 0.99 7.43 -51.93 -0.39 0.61 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 39 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.97 4.64 -51.93 -0.24 0.73 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 51 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -28.83 381.61 -10.84 -39.67 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -10.15 Total: 2.25 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.55 Total: -19.45 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.87 Total: -45.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.83 -10.84 -39.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.459 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds