Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46797 * 2 1 4 4 C 1.53004 * 109.46691 * 240.00709 * 2 1 3 5 5 N 1.46897 * 109.47446 * 61.69570 * 4 2 1 6 6 C 1.46846 * 110.99795 * 52.27452 * 5 4 2 7 7 C 1.53041 * 109.52487 * 185.83767 * 6 5 4 8 8 C 1.53121 * 109.27946 * 300.82310 * 7 6 5 9 9 C 1.52999 * 109.57613 * 177.58718 * 8 7 6 10 10 C 1.53120 * 109.15669 * 57.65139 * 8 7 6 11 11 C 1.46849 * 111.00000 * 176.48183 * 5 4 2 12 12 N 1.46896 * 109.47461 * 120.00487 * 2 1 3 13 13 C 1.46895 * 111.00163 * 207.96086 * 12 2 1 14 14 H 1.09001 * 109.47250 * 327.80493 * 13 12 2 15 15 C 1.53000 * 109.46949 * 87.80311 * 13 12 2 16 16 C 1.52997 * 109.47668 * 207.80283 * 13 12 2 17 17 C 1.53005 * 109.46962 * 65.69507 * 16 13 12 18 18 C 1.50700 * 109.46768 * 174.76040 * 17 16 13 19 19 H 1.07998 * 120.00477 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99596 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00102 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99637 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47165 * 120.00276 * 22 20 18 25 25 H 1.48506 * 109.46430 * 239.99871 * 22 20 18 26 26 H 1.09003 * 109.47199 * 304.85423 * 1 2 3 27 27 H 1.08996 * 109.47553 * 64.85790 * 1 2 3 28 28 H 1.09001 * 109.47064 * 184.85646 * 1 2 3 29 29 H 1.09003 * 109.46805 * 181.69558 * 4 2 1 30 30 H 1.09003 * 109.46888 * 301.69187 * 4 2 1 31 31 H 1.09000 * 109.46343 * 305.85512 * 6 5 4 32 32 H 1.09008 * 109.46366 * 65.82485 * 6 5 4 33 33 H 1.09003 * 109.50236 * 180.88025 * 7 6 5 34 34 H 1.09000 * 109.52989 * 60.78363 * 7 6 5 35 35 H 1.09000 * 109.51948 * 297.74937 * 8 7 6 36 36 H 1.08997 * 109.46975 * 300.28944 * 9 8 7 37 37 H 1.08995 * 109.46693 * 60.28193 * 9 8 7 38 38 H 1.08994 * 109.47138 * 180.28353 * 9 8 7 39 39 H 1.09004 * 109.49868 * 182.40712 * 10 8 7 40 40 H 1.09002 * 109.50797 * 62.29168 * 10 8 7 41 41 H 1.08998 * 109.46541 * 294.18049 * 11 5 4 42 42 H 1.08999 * 109.46088 * 54.15812 * 11 5 4 43 43 H 1.00901 * 111.00165 * 84.01062 * 12 2 1 44 44 H 1.09007 * 109.47293 * 295.02900 * 15 13 12 45 45 H 1.08997 * 109.47144 * 55.03484 * 15 13 12 46 46 H 1.09007 * 109.47217 * 175.03516 * 15 13 12 47 47 H 1.09006 * 109.47183 * 305.70166 * 16 13 12 48 48 H 1.08996 * 109.47303 * 185.69920 * 16 13 12 49 49 H 1.08996 * 109.46957 * 294.75950 * 17 16 13 50 50 H 1.08996 * 109.47034 * 54.76167 * 17 16 13 51 51 H 0.96996 * 120.00216 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 1.5840 -0.0053 -2.4484 6 6 1.9322 1.4194 -2.3749 7 6 1.3176 2.1583 -3.5659 8 6 1.8489 1.5502 -4.8669 9 6 1.1929 2.2441 -6.0624 10 6 1.5153 0.0561 -4.8962 11 6 2.1244 -0.6218 -3.6667 12 7 2.0197 -0.6926 1.1993 13 6 3.3372 -0.1820 1.6010 14 1 3.8940 0.1235 0.7151 15 6 3.1567 1.0204 2.5297 16 6 4.1085 -1.2813 2.3341 17 6 4.4128 -2.4246 1.3639 18 6 5.2817 -3.4473 2.0495 19 1 5.5861 -3.2972 3.0748 20 6 5.6881 -4.5749 1.3678 21 7 5.3179 -4.7575 0.1192 22 14 6.7646 -5.8429 2.2179 23 1 7.0396 -5.4054 3.6101 24 1 6.0644 -7.1522 2.2392 25 1 8.0460 -5.9788 1.4799 26 1 -0.3634 0.5873 0.8433 27 1 -0.3634 0.4366 -0.9302 28 1 -0.3633 -1.0240 0.0870 29 1 3.1295 -0.7476 -1.2343 30 1 1.6519 -1.7397 -1.2648 31 1 1.5450 1.8405 -1.4471 32 1 3.0164 1.5300 -2.3991 33 1 1.5893 3.2129 -3.5195 34 1 0.2324 2.0603 -3.5349 35 1 2.9296 1.6833 -4.9164 36 1 0.1121 2.1125 -6.0107 37 1 1.4308 3.3075 -6.0406 38 1 1.5685 1.8066 -6.9873 39 1 1.9284 -0.3912 -5.8003 40 1 0.4333 -0.0756 -4.8859 41 1 3.2075 -0.5017 -3.6849 42 1 1.8765 -1.6832 -3.6773 43 1 2.0476 -1.6907 1.0544 44 1 2.6860 1.8361 1.9807 45 1 2.5255 0.7374 3.3720 46 1 4.1302 1.3446 2.8978 47 1 3.5067 -1.6575 3.1615 48 1 5.0428 -0.8740 2.7202 49 1 3.4798 -2.8925 1.0497 50 1 4.9341 -2.0315 0.4911 51 1 5.6041 -5.5505 -0.3605 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = -32.865532 kcal Electronic energy + Delta-G solvation = -23604.077818 eV Core-core repulsion = 20536.651641 eV Total energy + Delta-G solvation = -3067.426177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.49375 -37.56540 -35.08024 -33.31781 -32.23861 -30.86430 -29.53137 -28.43271 -27.84690 -25.10170 -24.83261 -23.32780 -22.02000 -21.44081 -20.08403 -19.63170 -19.49544 -16.42962 -16.19033 -15.30538 -15.23061 -14.73851 -14.55973 -14.50399 -14.22496 -13.86963 -13.65037 -13.14292 -12.96328 -12.60347 -12.50946 -12.40102 -12.18021 -12.08600 -11.86191 -11.71674 -11.57953 -11.24288 -11.21523 -11.16770 -11.03385 -10.91558 -10.69896 -10.67943 -10.47069 -10.32364 -10.20299 -10.04058 -9.75345 -9.28827 -9.02877 -8.37747 -8.20416 -7.93539 -6.02562 -4.04370 3.29494 3.37206 3.41557 3.94732 4.44488 4.63769 4.66103 4.72177 4.74851 5.00228 5.21309 5.30267 5.33281 5.35851 5.42399 5.46789 5.52927 5.54303 5.55232 5.63116 5.65168 5.76432 5.82090 5.88015 5.90556 5.91741 5.99129 6.03771 6.07572 6.10108 6.10341 6.15039 6.28538 6.33308 6.35626 6.39982 6.52313 6.56852 6.61257 6.91454 7.07804 7.16154 7.20421 7.57889 7.61560 7.79204 7.92822 7.97918 8.41035 9.02457 9.59976 11.08581 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003928 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.571986 B = 7126.418472 C = 8254.534514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.084 3.916 3 H 0.071 0.929 4 C 0.027 3.973 5 N -0.528 5.528 6 C 0.047 3.953 7 C -0.109 4.109 8 C -0.096 4.096 9 C -0.145 4.145 10 C -0.109 4.109 11 C 0.053 3.947 12 N -0.679 5.679 13 C 0.081 3.919 14 H 0.036 0.964 15 C -0.135 4.135 16 C -0.116 4.116 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.351 0.649 44 H 0.041 0.959 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.015 0.985 50 H 0.010 0.990 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 14.007 -8.601 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.102 4.102 5 N -0.254 5.254 6 C -0.081 4.081 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.202 4.202 10 C -0.147 4.147 11 C -0.075 4.075 12 N -0.313 5.313 13 C -0.028 4.028 14 H 0.054 0.946 15 C -0.193 4.193 16 C -0.154 4.154 17 C -0.014 4.014 18 C -0.557 4.557 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.173 0.827 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.033 0.967 50 H 0.028 0.972 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.146 14.242 -8.305 19.359 hybrid contribution 2.237 -1.223 -0.345 2.573 sum -7.909 13.019 -8.650 17.518 Atomic orbital electron populations 1.21658 0.94207 1.01804 1.00967 1.21687 0.96190 0.97449 0.87295 0.91057 1.22940 0.98386 0.98751 0.90125 1.62006 1.59472 1.01989 1.01887 1.22201 0.97850 0.88996 0.99027 1.21631 1.01170 0.98312 0.93553 1.21197 0.99916 0.95383 0.94937 1.21801 1.00753 1.00043 0.97597 1.21630 1.01600 0.94532 0.96900 1.22085 0.96773 0.98924 0.89718 1.60829 1.26750 1.10359 1.33321 1.21626 0.88725 0.95606 0.96867 0.94617 1.21797 1.00664 0.97092 0.99764 1.21858 0.98130 0.95889 0.99530 1.19107 0.96310 0.91993 0.94030 1.21283 1.30830 1.04873 0.98687 0.92647 1.25021 0.96361 0.98162 0.94877 1.69963 1.45804 1.27950 1.09746 0.86556 0.80314 0.81507 0.79765 1.19730 1.20987 1.21086 0.93203 0.91815 0.92973 0.94499 0.90301 0.90178 0.95292 0.91938 0.91146 0.91715 0.92647 0.92924 0.92880 0.91829 0.91161 0.94990 0.90633 0.82736 0.94010 0.92304 0.93104 0.92528 0.92769 0.96705 0.97182 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.37 37.16 0.35 -1.34 16 2 C 0.08 1.22 1.98 -67.71 -0.13 1.09 16 3 H 0.07 1.02 5.31 -51.93 -0.28 0.74 16 4 C 0.03 0.42 4.49 -3.82 -0.02 0.40 16 5 N -0.53 -6.97 3.99 -234.66 -0.94 -7.91 16 6 C 0.05 0.56 4.99 -3.83 -0.02 0.54 16 7 C -0.11 -1.07 5.38 -26.65 -0.14 -1.22 16 8 C -0.10 -0.92 2.79 -90.50 -0.25 -1.17 16 9 C -0.14 -1.16 9.21 37.16 0.34 -0.81 16 10 C -0.11 -1.13 5.38 -26.65 -0.14 -1.28 16 11 C 0.05 0.68 5.46 -3.83 -0.02 0.66 16 12 N -0.68 -11.32 6.08 -99.75 -0.61 -11.92 16 13 C 0.08 1.42 2.43 -67.72 -0.16 1.25 16 14 H 0.04 0.66 7.33 -51.93 -0.38 0.28 16 15 C -0.14 -2.01 9.42 37.16 0.35 -1.66 16 16 C -0.12 -2.40 4.71 -26.73 -0.13 -2.52 16 17 C 0.02 0.57 4.73 -27.88 -0.13 0.44 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.79 7.46 -51.93 -0.39 0.41 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 0.94 5.75 -51.93 -0.30 0.64 16 32 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.35 6.52 6.28 -39.29 -0.25 6.28 16 44 H 0.04 0.57 7.73 -51.93 -0.40 0.17 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.01 0.39 6.64 -51.93 -0.35 0.04 16 50 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -28.51 384.03 -10.87 -39.38 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -10.31 Total: 2.93 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.52 Total: -19.05 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.81 Total: -45.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.51 -10.87 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds