Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46776 * 2 1 4 4 N 1.46896 * 109.47343 * 120.00197 * 2 1 3 5 5 C 1.46895 * 111.00001 * 329.88932 * 4 2 1 6 6 H 1.09003 * 109.47449 * 59.36113 * 5 4 2 7 7 C 1.53003 * 109.47463 * 179.36230 * 5 4 2 8 8 C 1.53004 * 109.47198 * 299.36123 * 5 4 2 9 9 C 1.53003 * 109.47336 * 180.52062 * 8 5 4 10 10 C 1.50696 * 109.46953 * 176.10475 * 9 8 5 11 11 H 1.07997 * 119.99904 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99747 * 179.72239 * 10 9 8 13 13 N 1.31520 * 120.00374 * 0.28353 * 12 10 9 14 14 Si 1.86803 * 120.00021 * 180.27687 * 12 10 9 15 15 H 1.48504 * 109.46861 * 60.00470 * 14 12 10 16 16 H 1.48501 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47531 * 300.00429 * 14 12 10 18 18 C 1.46900 * 110.99655 * 93.84108 * 4 2 1 19 19 H 1.09003 * 109.47153 * 185.99584 * 18 4 2 20 20 C 1.53003 * 109.47187 * 305.98912 * 18 4 2 21 21 C 1.53005 * 109.47012 * 180.02562 * 20 18 4 22 22 C 1.53001 * 109.47213 * 300.00371 * 21 20 18 23 23 H 1.09003 * 109.47118 * 300.00431 * 22 21 20 24 24 N 1.46894 * 109.47223 * 179.97438 * 22 21 20 25 25 C 1.53003 * 109.47435 * 59.99888 * 22 21 20 26 26 C 1.53001 * 109.47314 * 65.99452 * 18 4 2 27 27 H 1.09001 * 109.46952 * 306.58163 * 1 2 3 28 28 H 1.08998 * 109.47356 * 66.58551 * 1 2 3 29 29 H 1.09002 * 109.47099 * 186.58135 * 1 2 3 30 30 H 1.09005 * 109.46743 * 240.00607 * 2 1 3 31 31 H 1.09004 * 109.46710 * 187.52486 * 3 2 1 32 32 H 1.08993 * 109.47630 * 307.52564 * 3 2 1 33 33 H 1.09003 * 109.47196 * 67.53140 * 3 2 1 34 34 H 1.08989 * 109.47621 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.46555 * 300.00300 * 7 5 4 36 36 H 1.09003 * 109.46884 * 59.99537 * 7 5 4 37 37 H 1.09000 * 109.46537 * 60.51822 * 8 5 4 38 38 H 1.08994 * 109.46798 * 300.52421 * 8 5 4 39 39 H 1.09000 * 109.46621 * 56.10573 * 9 8 5 40 40 H 1.08994 * 109.46900 * 296.10771 * 9 8 5 41 41 H 0.96998 * 120.00007 * 179.97438 * 13 12 10 42 42 H 1.08994 * 109.47335 * 300.00136 * 20 18 4 43 43 H 1.09000 * 109.46858 * 60.00976 * 20 18 4 44 44 H 1.09000 * 109.46910 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.47146 * 60.00215 * 21 20 18 46 46 H 1.00902 * 110.99914 * 60.00178 * 24 22 21 47 47 H 1.00901 * 111.00075 * 183.94766 * 24 22 21 48 48 H 1.08994 * 109.47335 * 180.02562 * 25 22 21 49 49 H 1.09000 * 109.46858 * 59.99491 * 25 22 21 50 50 H 1.08992 * 109.46937 * 299.99694 * 26 18 4 51 51 H 1.09000 * 109.46820 * 60.00112 * 26 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.0767 -0.5426 2.3157 6 1 0.1092 -0.9569 2.0322 7 6 1.6122 -1.2888 3.5394 8 6 0.9171 0.9413 2.6528 9 6 -0.0551 1.0965 3.8240 10 6 -0.1389 2.5487 4.2180 11 1 0.4427 3.2869 3.6860 12 6 -0.9629 2.9354 5.2536 13 7 -1.6714 2.0364 5.9012 14 14 -1.0727 4.7365 5.7371 15 1 -1.5548 5.5313 4.5790 16 1 -2.0199 4.8878 6.8707 17 1 0.2697 5.2220 6.1461 18 6 2.2818 -2.1104 0.9184 19 1 2.5406 -2.6226 1.8451 20 6 1.0302 -2.7504 0.3144 21 6 1.3030 -4.2274 0.0223 22 6 2.4644 -4.3456 -0.9668 23 1 2.2058 -3.8336 -1.8937 24 7 2.7267 -5.7636 -1.2467 25 6 3.7159 -3.7056 -0.3628 26 6 3.4430 -2.2281 -0.0709 27 1 -0.3633 0.6125 0.8252 28 1 -0.3634 0.4084 -0.9430 29 1 -0.3633 -1.0209 0.1178 30 1 1.8933 -0.5138 -0.8901 31 1 3.1216 1.4454 -0.1346 32 1 1.5709 1.9937 -0.8149 33 1 1.7907 1.9160 0.9497 34 1 0.9128 -1.1772 4.3678 35 1 1.7259 -2.3459 3.2992 36 1 2.5797 -0.8745 3.8229 37 1 0.5269 1.4712 1.7839 38 1 1.8862 1.3577 2.9273 39 1 0.3002 0.5100 4.6712 40 1 -1.0422 0.7433 3.5260 41 1 -2.2508 2.3085 6.6300 42 1 0.2030 -2.6666 1.0191 43 1 0.7714 -2.2383 -0.6124 44 1 0.4115 -4.6832 -0.4084 45 1 1.5616 -4.7393 0.9491 46 1 1.9146 -6.2095 -1.6465 47 1 3.5304 -5.8710 -1.8472 48 1 4.5431 -3.7894 -1.0675 49 1 3.9745 -4.2174 0.5642 50 1 3.1841 -1.7159 -0.9975 51 1 4.3346 -1.7722 0.3595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -7.756197 kcal Electronic energy + Delta-G solvation = -24399.873054 eV Core-core repulsion = 21333.535700 eV Total energy + Delta-G solvation = -3066.337355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32861 -37.61305 -34.22010 -33.21274 -32.37706 -30.94720 -30.52570 -28.12036 -27.01230 -26.42078 -25.01668 -22.89168 -22.19476 -21.62192 -20.33102 -19.39765 -18.27574 -16.32734 -16.04353 -15.73761 -15.59076 -15.22391 -15.02800 -14.38959 -14.25686 -13.72262 -13.45312 -13.27855 -12.86815 -12.42039 -12.35009 -12.15470 -12.02550 -11.90021 -11.78860 -11.64249 -11.43425 -11.23860 -11.09916 -11.04327 -10.92298 -10.86527 -10.61187 -10.51285 -10.39929 -10.27324 -10.08478 -9.69969 -9.42762 -9.02775 -8.95224 -8.91016 -8.27247 -7.81521 -5.95483 -3.96919 3.35782 3.40053 3.42719 4.05122 4.31357 4.50208 4.61382 4.64383 5.03783 5.08854 5.16086 5.21996 5.35644 5.40183 5.41946 5.42551 5.46368 5.57210 5.62297 5.68434 5.77514 5.82792 5.91083 5.93708 5.97673 6.06204 6.06263 6.10123 6.15802 6.16462 6.25213 6.30201 6.37070 6.46298 6.54450 6.57757 6.63392 6.76373 6.89972 6.90621 6.95027 7.16128 7.27751 7.57883 7.63381 7.75756 7.91606 8.06231 8.49711 9.10357 9.66614 11.15779 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.003732 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.265122 B = 7501.115754 C = 7831.011654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 C -0.157 4.157 4 N -0.523 5.523 5 C 0.079 3.921 6 H 0.043 0.957 7 C -0.147 4.147 8 C -0.112 4.112 9 C 0.021 3.979 10 C -0.517 4.517 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.080 3.920 19 H 0.088 0.912 20 C -0.153 4.153 21 C -0.107 4.107 22 C 0.091 3.909 23 H 0.031 0.969 24 N -0.849 5.849 25 C -0.110 4.110 26 C -0.108 4.108 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.010 0.990 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.339 0.661 47 H 0.339 0.661 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -12.264 -15.320 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.028 4.028 3 C -0.214 4.214 4 N -0.245 5.245 5 C -0.028 4.028 6 H 0.060 0.940 7 C -0.204 4.204 8 C -0.150 4.150 9 C -0.017 4.017 10 C -0.555 4.555 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.029 4.029 19 H 0.106 0.894 20 C -0.192 4.192 21 C -0.146 4.146 22 C -0.020 4.020 23 H 0.049 0.951 24 N -0.379 5.379 25 C -0.148 4.148 26 C -0.146 4.146 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.703 -12.111 -14.234 20.616 hybrid contribution -1.171 0.826 -0.988 1.741 sum 7.531 -11.284 -15.223 20.391 Atomic orbital electron populations 1.22960 0.97299 1.02815 1.02990 1.21583 0.93022 0.95558 0.92624 1.22178 1.00503 0.95441 1.03274 1.62461 1.46177 1.10287 1.05621 1.21800 0.92893 0.98471 0.89611 0.93958 1.21980 1.02102 0.98173 0.98147 1.22106 1.00744 0.91938 1.00179 1.19169 0.93511 0.96598 0.92389 1.21229 1.24885 0.93451 1.15973 0.92874 1.25006 0.95726 0.97216 0.96474 1.69955 1.27939 1.33161 1.22555 0.86705 0.77846 0.85728 0.77994 1.20331 1.21377 1.20270 1.21829 0.93517 0.89040 0.98509 0.89410 1.22436 0.99816 0.95446 1.01543 1.21493 0.96845 0.96648 0.99616 1.21368 0.96028 0.87712 0.96872 0.95118 1.58737 1.09694 1.14557 1.54879 1.21542 0.96294 0.95677 1.01325 1.21580 0.98903 0.95079 0.99073 0.89736 0.93245 0.92211 0.91458 0.93044 0.93441 0.89811 0.91107 0.93898 0.92364 0.91790 0.92651 0.96090 0.97130 0.93065 0.91348 0.91483 0.92644 0.91178 0.84898 0.84917 0.92404 0.91083 0.92196 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 7.29 37.16 0.27 -2.62 16 2 C 0.08 1.10 2.12 -67.72 -0.14 0.96 16 3 C -0.16 -2.22 9.11 37.16 0.34 -1.88 16 4 N -0.52 -7.57 4.25 -210.84 -0.90 -8.47 16 5 C 0.08 1.35 1.37 -67.71 -0.09 1.26 16 6 H 0.04 0.75 4.99 -51.93 -0.26 0.49 16 7 C -0.15 -2.47 8.48 37.16 0.32 -2.15 16 8 C -0.11 -2.29 2.80 -26.73 -0.07 -2.36 16 9 C 0.02 0.53 4.72 -27.88 -0.13 0.40 16 10 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 C 0.08 0.98 1.91 -67.71 -0.13 0.86 16 19 H 0.09 1.16 5.69 -51.93 -0.30 0.87 16 20 C -0.15 -1.77 3.47 -26.73 -0.09 -1.87 16 21 C -0.11 -1.10 5.50 -26.73 -0.15 -1.25 16 22 C 0.09 0.84 3.25 -67.71 -0.22 0.62 16 23 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 24 N -0.85 -6.86 9.25 -4.67 -0.04 -6.90 16 25 C -0.11 -1.04 5.46 -26.70 -0.15 -1.19 16 26 C -0.11 -1.16 5.18 -26.70 -0.14 -1.30 16 27 H 0.08 1.43 4.71 -51.93 -0.24 1.18 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.82 4.47 -51.93 -0.23 0.59 16 30 H 0.07 0.84 5.24 -51.93 -0.27 0.57 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.08 1.38 4.51 -51.93 -0.23 1.15 16 34 H 0.07 1.32 6.33 -51.94 -0.33 0.99 16 35 H 0.04 0.63 6.13 -51.93 -0.32 0.31 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.28 3.64 -51.93 -0.19 1.09 16 38 H 0.05 1.18 7.90 -51.93 -0.41 0.77 16 39 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 0.89 6.24 -51.93 -0.32 0.57 16 43 H 0.07 0.78 5.63 -51.93 -0.29 0.49 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.34 2.34 9.04 -39.29 -0.36 1.98 16 47 H 0.34 2.25 8.99 -39.29 -0.35 1.89 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.64 6.29 -51.93 -0.33 0.32 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -29.13 354.49 -9.63 -38.76 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.95 Total: 4.65 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -0.80 Total: -23.92 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.20 Total: -41.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.13 -9.63 -38.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.004 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds