Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 N 1.46902 * 109.46948 * 119.99982 * 2 1 3 5 5 C 1.46897 * 111.00237 * 92.40657 * 4 2 1 6 6 H 1.08994 * 109.47262 * 196.86572 * 5 4 2 7 7 C 1.52999 * 109.47311 * 76.86064 * 5 4 2 8 8 C 1.53008 * 109.46792 * 316.86140 * 5 4 2 9 9 C 1.52995 * 109.47084 * 281.09519 * 8 5 4 10 10 C 1.50705 * 109.47174 * 178.25848 * 9 8 5 11 11 H 1.07995 * 119.99892 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99805 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00553 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99815 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46860 * 60.00140 * 14 12 10 16 16 H 1.48499 * 109.47401 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47311 * 300.00418 * 14 12 10 18 18 C 1.46895 * 111.00082 * 328.44601 * 4 2 1 19 19 H 1.09006 * 109.46843 * 50.29409 * 18 4 2 20 20 C 1.53005 * 109.47233 * 170.29211 * 18 4 2 21 21 C 1.52999 * 109.47353 * 180.02562 * 20 18 4 22 22 C 1.53003 * 109.46448 * 299.99830 * 21 20 18 23 23 H 1.08997 * 109.47431 * 299.99684 * 22 21 20 24 24 N 1.46904 * 109.46534 * 180.02562 * 22 21 20 25 25 C 1.52995 * 109.47428 * 60.00581 * 22 21 20 26 26 C 1.52997 * 109.47385 * 290.29133 * 18 4 2 27 27 H 1.08994 * 109.47438 * 298.40304 * 1 2 3 28 28 H 1.08998 * 109.47102 * 58.41250 * 1 2 3 29 29 H 1.09005 * 109.46947 * 178.40994 * 1 2 3 30 30 H 1.08998 * 109.47022 * 239.99730 * 2 1 3 31 31 H 1.09002 * 109.47154 * 184.12939 * 3 2 1 32 32 H 1.09000 * 109.47229 * 304.12568 * 3 2 1 33 33 H 1.08998 * 109.47298 * 64.12880 * 3 2 1 34 34 H 1.09000 * 109.47196 * 294.94467 * 7 5 4 35 35 H 1.09000 * 109.47124 * 54.94551 * 7 5 4 36 36 H 1.09000 * 109.46719 * 174.94675 * 7 5 4 37 37 H 1.09001 * 109.47266 * 41.09555 * 8 5 4 38 38 H 1.09004 * 109.46963 * 161.09493 * 8 5 4 39 39 H 1.09005 * 109.47161 * 298.26054 * 9 8 5 40 40 H 1.09004 * 109.47141 * 58.25895 * 9 8 5 41 41 H 0.97001 * 119.99943 * 179.97438 * 13 12 10 42 42 H 1.09006 * 109.46960 * 300.00139 * 20 18 4 43 43 H 1.08995 * 109.47289 * 59.99842 * 20 18 4 44 44 H 1.09001 * 109.46994 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47478 * 59.99436 * 21 20 18 46 46 H 1.00900 * 111.00258 * 59.99902 * 24 22 21 47 47 H 1.00909 * 110.99910 * 183.95325 * 24 22 21 48 48 H 1.08997 * 109.47328 * 179.97438 * 25 22 21 49 49 H 1.08997 * 109.47546 * 59.99174 * 25 22 21 50 50 H 1.08997 * 109.47313 * 299.99739 * 26 18 4 51 51 H 1.09002 * 109.47361 * 60.00117 * 26 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.2494 -2.1177 0.9276 6 1 2.3174 -2.6610 1.8701 7 6 3.5550 -2.2841 0.1476 8 6 1.0874 -2.6731 0.1016 9 6 -0.1060 -2.9460 1.0192 10 6 -1.2646 -3.4526 0.1994 11 1 -1.1600 -3.5688 -0.8692 12 6 -2.4577 -3.7688 0.8137 13 7 -2.5850 -3.6278 2.1151 14 14 -3.8940 -4.3962 -0.2026 15 1 -3.5016 -5.6516 -0.8919 16 1 -5.0520 -4.6623 0.6882 17 1 -4.2700 -3.3740 -1.2121 18 6 1.0933 -0.5139 2.3254 19 1 0.0808 -0.7600 2.0054 20 6 1.5035 -1.4370 3.4747 21 6 0.5383 -1.2515 4.6472 22 6 0.5841 0.2030 5.1201 23 1 1.5964 0.4493 5.4403 24 7 -0.3422 0.3810 6.2463 25 6 0.1738 1.1260 3.9710 26 6 1.1395 0.9404 2.7982 27 1 -0.3634 0.4888 0.9039 28 1 -0.3633 0.5383 -0.8754 29 1 -0.3633 -1.0273 -0.0285 30 1 1.8933 -0.5139 -0.8900 31 1 3.1275 1.4434 -0.0740 32 1 1.6175 1.9772 -0.8507 33 1 1.7383 1.9345 0.9246 34 1 3.4550 -1.8171 -0.8322 35 1 4.3687 -1.8087 0.6953 36 1 3.7715 -3.3452 0.0238 37 1 0.8022 -1.9462 -0.6590 38 1 1.3950 -3.6013 -0.3801 39 1 0.1698 -3.6958 1.7608 40 1 -0.3941 -2.0241 1.5245 41 1 -3.4246 -3.8499 2.5472 42 1 1.4706 -2.4732 3.1379 43 1 2.5160 -1.1910 3.7946 44 1 0.8309 -1.9087 5.4661 45 1 -0.4740 -1.4977 4.3271 46 1 -0.0920 -0.2183 7.0185 47 1 -0.3786 1.3471 6.5354 48 1 0.2060 2.1621 4.3079 49 1 -0.8385 0.8797 3.6507 50 1 2.1519 1.1865 3.1182 51 1 0.8472 1.5981 1.9795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = 9.460127 kcal Electronic energy + Delta-G solvation = -25413.279998 eV Core-core repulsion = 22347.689199 eV Total energy + Delta-G solvation = -3065.590799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22804 -37.24742 -33.92475 -32.81754 -32.73110 -30.27111 -30.00038 -29.00759 -26.64866 -26.14203 -24.89628 -22.64078 -21.68407 -21.14436 -20.36347 -19.27279 -18.04230 -16.49880 -16.04780 -15.40127 -15.20980 -14.93980 -14.71651 -14.46574 -13.46464 -13.41372 -13.27935 -13.11228 -12.74221 -12.37860 -12.20614 -11.94484 -11.83690 -11.77902 -11.47113 -11.33483 -11.23604 -10.98079 -10.93783 -10.85813 -10.78430 -10.66072 -10.60864 -10.38496 -10.07794 -9.87748 -9.72910 -9.53954 -9.20556 -9.13254 -8.98461 -8.51576 -8.28895 -7.47310 -5.96817 -3.98834 3.33438 3.38645 3.40759 4.33129 4.47604 4.67736 4.99960 5.10999 5.35420 5.37113 5.47037 5.54322 5.62433 5.63698 5.72336 5.81071 5.84713 5.87255 5.91129 5.94177 5.97751 6.04995 6.08759 6.16802 6.19441 6.23729 6.35292 6.38587 6.44033 6.47277 6.51022 6.51823 6.56586 6.69011 6.72773 6.78149 6.84169 6.88196 6.98912 7.12713 7.20153 7.34387 7.56874 7.71781 7.74481 7.81958 7.93116 8.05095 8.46227 9.07314 9.64635 11.12963 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.007230 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.343564 B = 3871.719084 C = 5059.666176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 C -0.151 4.151 4 N -0.520 5.520 5 C 0.063 3.937 6 H 0.086 0.914 7 C -0.135 4.135 8 C -0.156 4.156 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.050 0.950 12 C 0.061 3.939 13 N -0.888 5.888 14 Si 0.885 3.115 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.066 3.934 19 H 0.089 0.911 20 C -0.113 4.113 21 C -0.110 4.110 22 C 0.095 3.905 23 H 0.027 0.973 24 N -0.847 5.847 25 C -0.112 4.112 26 C -0.116 4.116 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.011 0.989 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.338 0.662 47 H 0.334 0.666 48 H 0.052 0.948 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 9.371 3.151 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.030 4.030 3 C -0.209 4.209 4 N -0.244 5.244 5 C -0.044 4.044 6 H 0.104 0.896 7 C -0.193 4.193 8 C -0.194 4.194 9 C -0.024 4.024 10 C -0.561 4.561 11 H 0.068 0.932 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.713 3.287 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.041 4.041 19 H 0.106 0.894 20 C -0.151 4.151 21 C -0.148 4.148 22 C -0.016 4.016 23 H 0.045 0.955 24 N -0.376 5.376 25 C -0.150 4.150 26 C -0.154 4.154 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.150 0.850 47 H 0.146 0.854 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.432 9.295 2.922 13.561 hybrid contribution -0.803 -0.477 -0.234 0.963 sum 8.629 8.818 2.687 12.626 Atomic orbital electron populations 1.23131 0.96461 1.06373 1.01186 1.21566 0.93680 0.94359 0.93361 1.22177 1.00734 0.96288 1.01677 1.62437 1.45763 1.11306 1.04886 1.22038 0.94574 0.88320 0.99513 0.89647 1.21793 0.97425 1.00348 0.99762 1.22683 0.96712 1.00079 0.99974 1.19488 0.91074 0.97393 0.94454 1.21202 0.97069 1.43896 0.93888 0.93163 1.24966 0.98513 0.95765 0.94821 1.69936 1.25834 1.48512 1.08441 0.86776 0.82321 0.79400 0.80193 1.20424 1.21332 1.20372 1.22087 0.97670 0.94070 0.90310 0.89358 1.21715 0.98152 1.00496 0.94731 1.21506 1.01871 0.94123 0.97308 1.21359 0.92462 0.96713 0.91076 0.95515 1.58696 1.56414 1.11188 1.11333 1.21558 1.00659 0.97814 0.94986 1.21917 0.99001 0.97241 0.97240 0.92130 0.93730 0.87306 0.90986 0.93024 0.93477 0.91333 0.93449 0.92904 0.93049 0.91555 0.93566 0.97112 0.94366 0.93018 0.90475 0.92676 0.92841 0.89870 0.85017 0.85357 0.92907 0.90960 0.92188 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.77 7.17 37.16 0.27 -3.50 16 2 C 0.08 1.23 2.17 -67.71 -0.15 1.09 16 3 C -0.15 -2.01 9.18 37.15 0.34 -1.67 16 4 N -0.52 -8.33 4.17 -210.85 -0.88 -9.21 16 5 C 0.06 1.08 2.25 -67.71 -0.15 0.93 16 6 H 0.09 1.53 4.88 -51.93 -0.25 1.27 16 7 C -0.14 -1.98 9.17 37.16 0.34 -1.64 16 8 C -0.16 -3.14 4.01 -26.73 -0.11 -3.25 16 9 C 0.01 0.30 2.92 -27.88 -0.08 0.21 16 10 C -0.52 -14.35 8.65 -34.44 -0.30 -14.65 16 11 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 14 Si 0.88 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.07 1.09 0.76 -67.71 -0.05 1.04 16 19 H 0.09 1.77 3.00 -51.93 -0.16 1.62 16 20 C -0.11 -1.85 4.41 -26.73 -0.12 -1.97 16 21 C -0.11 -1.77 5.50 -26.73 -0.15 -1.92 16 22 C 0.09 1.31 3.24 -67.71 -0.22 1.09 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 N -0.85 -10.66 9.25 -4.67 -0.04 -10.71 16 25 C -0.11 -1.57 5.47 -26.71 -0.15 -1.71 16 26 C -0.12 -1.66 3.96 -26.71 -0.11 -1.77 16 27 H 0.06 1.07 5.01 -51.93 -0.26 0.81 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 2.29 3.17 -51.93 -0.16 2.13 16 30 H 0.07 1.16 5.61 -51.93 -0.29 0.87 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.89 4.38 -51.93 -0.23 0.67 16 34 H 0.05 0.68 7.05 -51.93 -0.37 0.31 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.33 4.08 -51.93 -0.21 1.12 16 38 H 0.05 0.94 8.00 -51.93 -0.42 0.53 16 39 H 0.01 0.28 7.78 -51.93 -0.40 -0.12 16 40 H 0.04 0.95 3.67 -51.93 -0.19 0.76 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.08 1.42 4.88 -51.93 -0.25 1.16 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.34 3.76 9.04 -39.29 -0.36 3.41 16 47 H 0.33 3.52 8.99 -39.29 -0.35 3.17 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 1.06 4.03 -51.93 -0.21 0.85 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -28.07 349.21 -9.39 -37.46 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -8.73 Total: 11.86 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -0.72 Total: -26.11 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.19 Total: -45.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.07 -9.39 -37.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.922 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds