Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47119 * 2 1 4 4 C 1.52995 * 109.47345 * 119.99788 * 2 1 3 5 5 C 1.52995 * 109.47388 * 185.00224 * 4 2 1 6 6 C 1.50698 * 109.47276 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00381 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46680 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47175 * 119.99841 * 10 8 6 13 13 H 1.48496 * 109.47427 * 240.00613 * 10 8 6 14 14 N 1.46899 * 109.47212 * 239.99782 * 2 1 3 15 15 C 1.46908 * 110.99947 * 85.00173 * 14 2 1 16 16 H 1.09004 * 110.64127 * 323.29834 * 15 14 2 17 17 C 1.54595 * 110.72736 * 86.45273 * 15 14 2 18 18 C 1.53992 * 105.14145 * 140.49304 * 17 15 14 19 19 N 1.47903 * 107.22432 * 1.12596 * 18 17 15 20 20 C 1.46899 * 111.00278 * 214.25180 * 19 18 17 21 21 C 1.52996 * 109.47224 * 291.89553 * 20 19 18 22 22 C 1.53002 * 109.47495 * 66.90251 * 21 20 19 23 23 C 1.53004 * 109.47077 * 186.90658 * 21 20 19 24 24 C 1.53004 * 109.46962 * 306.90234 * 21 20 19 25 25 C 1.48810 * 105.68206 * 334.90756 * 19 18 17 26 26 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46867 * 300.00298 * 1 2 3 28 28 H 1.09005 * 109.47339 * 60.00367 * 1 2 3 29 29 H 1.08999 * 109.47294 * 305.00243 * 4 2 1 30 30 H 1.09002 * 109.47086 * 65.00063 * 4 2 1 31 31 H 1.09004 * 109.47022 * 299.99505 * 5 4 2 32 32 H 1.08991 * 109.47532 * 60.00082 * 5 4 2 33 33 H 0.96995 * 119.99992 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00202 * 208.95213 * 14 2 1 35 35 H 1.09004 * 110.30460 * 21.57702 * 17 15 14 36 36 H 1.08992 * 110.30890 * 259.41204 * 17 15 14 37 37 H 1.08994 * 109.91566 * 120.57624 * 18 17 15 38 38 H 1.09001 * 109.91623 * 241.67552 * 18 17 15 39 39 H 1.09005 * 109.46927 * 51.89127 * 20 19 18 40 40 H 1.08992 * 109.47273 * 171.88896 * 20 19 18 41 41 H 1.09003 * 109.46549 * 40.17095 * 22 21 20 42 42 H 1.09000 * 109.46620 * 160.16626 * 22 21 20 43 43 H 1.08999 * 109.47123 * 280.16957 * 22 21 20 44 44 H 1.09005 * 109.46945 * 59.99762 * 23 21 20 45 45 H 1.09001 * 109.46642 * 179.97438 * 23 21 20 46 46 H 1.08993 * 109.47139 * 299.99339 * 23 21 20 47 47 H 1.09003 * 109.47053 * 67.14294 * 24 21 20 48 48 H 1.08996 * 109.47463 * 187.13883 * 24 21 20 49 49 H 1.08997 * 109.47270 * 307.14784 * 24 21 20 50 50 H 1.09005 * 110.51525 * 280.54563 * 25 19 18 51 51 H 1.08993 * 110.84620 * 157.56315 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3612 2.8151 9 7 6.2691 -0.7757 2.0005 10 14 6.0413 -2.2418 4.3403 11 1 4.8912 -2.8132 5.0861 12 1 6.9628 -3.3349 3.9391 13 1 6.7646 -1.2778 5.2078 14 7 2.0196 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3469 16 1 1.2477 0.9233 -2.3258 17 6 3.4308 0.9785 -2.3707 18 6 3.8320 1.0386 -3.8563 19 7 2.7560 0.3793 -4.6276 20 6 3.3018 -0.3293 -5.7929 21 6 3.8409 0.6870 -6.8014 22 6 5.0573 1.3997 -6.2068 23 6 4.2511 -0.0369 -8.0854 24 6 2.7534 1.7148 -7.1206 25 6 2.1033 -0.5653 -3.6809 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2617 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4260 32 1 3.8531 0.4370 1.3573 33 1 7.2197 -0.8015 2.1915 34 1 2.9173 -1.1205 -1.0287 35 1 4.1807 0.4326 -1.7981 36 1 3.3074 1.9850 -1.9711 37 1 3.9324 2.0770 -4.1720 38 1 4.7741 0.5118 -4.0081 39 1 4.1099 -0.9869 -5.4724 40 1 2.5147 -0.9217 -6.2593 41 1 5.6708 0.6800 -5.6646 42 1 5.6447 1.8463 -7.0090 43 1 4.7230 2.1801 -5.5232 44 1 3.3845 -0.5445 -8.5090 45 1 4.6348 0.6873 -8.8040 46 1 5.0259 -0.7690 -7.8580 47 1 2.5511 2.3169 -6.2347 48 1 3.0912 2.3618 -7.9301 49 1 1.8429 1.1981 -7.4242 50 1 2.6946 -1.4755 -3.5809 51 1 1.0895 -0.8004 -4.0047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -19.950940 kcal Electronic energy + Delta-G solvation = -23435.156911 eV Core-core repulsion = 20368.290753 eV Total energy + Delta-G solvation = -3066.866158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70986 -37.55200 -35.74427 -33.15563 -31.64875 -29.96324 -29.18498 -27.78627 -27.30063 -26.87473 -25.20933 -24.62306 -21.50629 -20.90827 -20.38870 -19.46523 -18.93500 -16.49565 -16.16461 -15.87408 -15.11762 -14.76371 -14.52843 -14.25021 -14.15924 -13.62620 -13.38862 -13.33946 -12.85767 -12.58002 -12.51264 -12.45722 -12.16103 -12.04434 -11.93055 -11.79450 -11.51298 -11.36055 -11.25294 -11.14951 -11.06826 -10.91917 -10.71123 -10.57505 -10.49280 -10.43747 -10.33986 -10.15283 -9.76802 -9.27419 -9.02872 -8.37719 -8.35177 -7.92576 -6.02802 -4.04541 3.29360 3.37090 3.41448 3.92225 4.44335 4.53283 4.68276 4.72807 4.81273 4.88936 5.13525 5.19767 5.33279 5.35902 5.41953 5.45377 5.50566 5.56072 5.59686 5.63866 5.67231 5.69914 5.75395 5.81345 5.83044 5.94343 5.95395 5.97550 6.03490 6.07278 6.10791 6.17058 6.27242 6.31010 6.33438 6.38629 6.39342 6.53103 6.57523 6.90597 6.92605 7.08631 7.10559 7.56051 7.61002 7.79154 7.91153 7.97979 8.40936 9.02372 9.59822 11.08355 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003527 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.770505 B = 7937.642755 C = 8964.385826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.038 0.962 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.680 5.680 15 C 0.090 3.910 16 H 0.085 0.915 17 C -0.167 4.167 18 C 0.036 3.964 19 N -0.514 5.514 20 C 0.057 3.943 21 C -0.066 4.066 22 C -0.155 4.155 23 C -0.140 4.140 24 C -0.126 4.126 25 C 0.047 3.953 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.352 0.648 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.043 0.957 49 H 0.050 0.950 50 H 0.047 0.953 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 4.007 -17.746 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.314 5.314 15 C -0.022 4.022 16 H 0.103 0.897 17 C -0.207 4.207 18 C -0.092 4.092 19 N -0.238 5.238 20 C -0.071 4.071 21 C -0.066 4.066 22 C -0.211 4.211 23 C -0.198 4.198 24 C -0.183 4.183 25 C -0.081 4.081 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.409 4.148 -18.124 20.015 hybrid contribution 1.988 -0.548 1.336 2.457 sum -5.421 3.600 -16.788 18.006 Atomic orbital electron populations 1.21801 0.95786 1.01665 1.00162 1.21567 0.94402 0.96162 0.90397 0.94380 1.21830 0.99646 0.99431 0.94390 1.19113 0.88795 0.96791 0.96809 1.21285 0.91942 1.34063 1.08344 0.92641 1.25023 0.97100 0.95628 0.96701 1.69966 1.02289 1.44220 1.37041 0.86555 0.78863 0.79477 0.83238 1.19724 1.21034 1.21056 1.60580 1.34655 1.31838 1.04282 1.22406 0.96200 0.92994 0.90591 0.89696 1.23252 0.99037 1.02101 0.96291 1.23166 0.93510 0.99933 0.92572 1.64767 1.25619 1.27061 1.06334 1.22340 0.98154 0.94744 0.91876 1.20522 0.95804 0.95747 0.94530 1.22355 0.97116 1.00838 1.00830 1.21864 1.01105 1.00194 0.96626 1.21701 0.97368 0.98114 1.01154 1.23166 0.99514 0.94162 0.91272 0.92432 0.93093 0.93746 0.92763 0.92526 0.96803 0.96976 0.93128 0.82559 0.90552 0.91370 0.90247 0.93422 0.94709 0.90984 0.92780 0.93215 0.91199 0.92718 0.92591 0.92857 0.91592 0.93840 0.93074 0.93451 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.40 37.16 0.35 -1.65 16 2 C 0.08 1.45 2.52 -67.72 -0.17 1.28 16 3 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 4 C -0.12 -2.35 4.74 -26.74 -0.13 -2.48 16 5 C 0.02 0.55 4.80 -27.89 -0.13 0.42 16 6 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.68 -11.20 6.17 -97.80 -0.60 -11.80 16 15 C 0.09 1.29 3.13 -65.85 -0.21 1.08 16 16 H 0.08 1.22 7.22 -51.93 -0.38 0.85 16 17 C -0.17 -2.44 6.46 -25.38 -0.16 -2.60 16 18 C 0.04 0.46 4.84 -2.75 -0.01 0.44 16 19 N -0.51 -6.18 4.38 -230.22 -1.01 -7.18 16 20 C 0.06 0.62 3.96 -3.83 -0.02 0.60 16 21 C -0.07 -0.62 0.83 -154.51 -0.13 -0.75 16 22 C -0.15 -1.50 7.22 37.16 0.27 -1.23 16 23 C -0.14 -1.15 8.38 37.16 0.31 -0.84 16 24 C -0.13 -1.18 8.08 37.16 0.30 -0.88 16 25 C 0.05 0.61 6.26 -1.74 -0.01 0.60 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.35 6.52 5.92 -39.29 -0.23 6.29 16 35 H 0.08 1.31 7.61 -51.93 -0.39 0.91 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.94 6.03 -51.93 -0.31 0.63 16 38 H 0.05 0.62 5.95 -51.93 -0.31 0.31 16 39 H 0.03 0.40 7.72 -51.93 -0.40 0.00 16 40 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.05 0.56 6.71 -51.93 -0.35 0.21 16 42 H 0.05 0.44 7.98 -51.93 -0.41 0.02 16 43 H 0.07 0.70 5.01 -51.93 -0.26 0.44 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.05 0.66 8.02 -51.93 -0.42 0.24 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -28.19 379.06 -10.35 -38.53 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -10.01 Total: 3.33 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -0.15 Total: -19.38 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.87 Total: -44.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.19 -10.35 -38.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.583 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds