Wall clock time and date at job start Tue Mar 31 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47178 * 239.99831 * 2 1 3 5 5 C 1.52996 * 109.47265 * 174.99643 * 4 2 1 6 6 C 1.50704 * 109.47581 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99355 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00184 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00031 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99732 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46887 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46869 * 120.00101 * 10 8 6 13 13 H 1.48494 * 109.47020 * 240.00429 * 10 8 6 14 14 N 1.46898 * 109.47330 * 120.00039 * 2 1 3 15 15 C 1.46902 * 110.99717 * 274.99888 * 14 2 1 16 16 H 1.09004 * 110.87679 * 328.84723 * 15 14 2 17 17 C 1.55400 * 111.02198 * 92.60607 * 15 14 2 18 18 C 1.54329 * 102.89689 * 153.63666 * 17 15 14 19 19 N 1.47446 * 107.36928 * 337.89260 * 18 17 15 20 20 C 1.46900 * 110.99552 * 236.66159 * 19 18 17 21 21 C 1.52995 * 109.47127 * 282.90300 * 20 19 18 22 22 C 1.53000 * 109.47106 * 65.83790 * 21 20 19 23 23 C 1.53005 * 109.47205 * 185.83382 * 21 20 19 24 24 C 1.52997 * 109.47479 * 305.83468 * 21 20 19 25 25 C 1.47842 * 108.56838 * 358.92963 * 19 18 17 26 26 H 1.09008 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47234 * 299.99688 * 1 2 3 28 28 H 1.08997 * 109.47652 * 60.00376 * 1 2 3 29 29 H 1.08995 * 109.47193 * 294.99843 * 4 2 1 30 30 H 1.09005 * 109.47044 * 55.00092 * 4 2 1 31 31 H 1.09003 * 109.47368 * 299.99932 * 5 4 2 32 32 H 1.09000 * 109.47153 * 60.00088 * 5 4 2 33 33 H 0.97001 * 119.99512 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00079 * 38.95220 * 14 2 1 35 35 H 1.08993 * 110.68116 * 35.33486 * 17 15 14 36 36 H 1.09003 * 110.84415 * 272.01068 * 17 15 14 37 37 H 1.08999 * 109.88692 * 218.40627 * 18 17 15 38 38 H 1.09002 * 109.88962 * 97.38067 * 18 17 15 39 39 H 1.08996 * 109.47249 * 42.90807 * 20 19 18 40 40 H 1.09002 * 109.46748 * 162.90322 * 20 19 18 41 41 H 1.09001 * 109.47246 * 51.82360 * 22 21 20 42 42 H 1.09000 * 109.47030 * 171.83158 * 22 21 20 43 43 H 1.09003 * 109.46587 * 291.82472 * 22 21 20 44 44 H 1.09007 * 109.46767 * 59.99800 * 23 21 20 45 45 H 1.08994 * 109.47264 * 180.02562 * 23 21 20 46 46 H 1.09000 * 109.47015 * 300.00698 * 23 21 20 47 47 H 1.08997 * 109.47126 * 59.99486 * 24 21 20 48 48 H 1.08998 * 109.47406 * 180.02562 * 24 21 20 49 49 H 1.09007 * 109.46888 * 300.00442 * 24 21 20 50 50 H 1.08996 * 110.37362 * 142.92346 * 25 19 18 51 51 H 1.08994 * 110.37546 * 265.15789 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3232 -2.5445 7 1 3.3686 -1.8030 -3.2140 8 6 5.4183 -1.3591 -2.8164 9 7 6.2688 -0.7744 -2.0014 10 14 6.0410 -2.2398 -4.3417 11 1 4.8909 -2.8114 -5.0873 12 1 6.7631 -1.2754 -5.2098 13 1 6.9636 -3.3320 -3.9406 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2227 2.3468 16 1 2.2970 1.2404 2.0207 17 6 0.7678 0.1709 3.1738 18 6 1.2322 0.5871 4.5855 19 7 2.6806 0.3234 4.6679 20 6 2.9892 -0.5741 5.7892 21 6 2.9375 0.2119 7.1007 22 6 1.5031 0.6765 7.3607 23 6 3.3996 -0.6846 8.2513 24 6 3.8581 1.4300 7.0020 25 6 3.1268 -0.2593 3.3845 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8531 0.4370 -1.3575 32 1 3.9994 -1.0727 -0.4260 33 1 7.2195 -0.8001 -2.1926 34 1 1.4496 -1.4979 1.4100 35 1 0.3595 -0.8396 3.1847 36 1 0.0365 0.8792 2.7843 37 1 0.7050 -0.0001 5.3373 38 1 1.0390 1.6484 4.7415 39 1 2.2575 -1.3815 5.8203 40 1 3.9867 -0.9928 5.6555 41 1 0.8264 -0.1749 7.2870 42 1 1.4364 1.1084 8.3593 43 1 1.2246 1.4270 6.6210 44 1 4.4215 -1.0156 8.0660 45 1 3.3623 -0.1248 9.1857 46 1 2.7438 -1.5524 8.3216 47 1 3.5289 2.0687 6.1824 48 1 3.8216 1.9897 7.9366 49 1 4.8800 1.0990 6.8167 50 1 4.1186 0.1104 3.1244 51 1 3.1316 -1.3476 3.4431 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489450.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:19 Heat of formation + Delta-G solvation = -19.786416 kcal Electronic energy + Delta-G solvation = -23269.002397 eV Core-core repulsion = 20202.143373 eV Total energy + Delta-G solvation = -3066.859024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75644 -37.55983 -35.77942 -33.12845 -31.58930 -29.95653 -29.19286 -27.75216 -27.27411 -26.82577 -25.28677 -24.64050 -21.35753 -20.91744 -20.70619 -19.72428 -18.92770 -16.27600 -16.05401 -16.00120 -15.00082 -14.79245 -14.48732 -14.27075 -14.15600 -13.47977 -13.44588 -13.15462 -13.00168 -12.82886 -12.60191 -12.37679 -12.34917 -12.24242 -11.83307 -11.74115 -11.61509 -11.50770 -11.27155 -11.10882 -11.01289 -10.81670 -10.80535 -10.73761 -10.55764 -10.47017 -10.39039 -10.02015 -9.60969 -9.17383 -8.85606 -8.27692 -8.21086 -7.85870 -5.86018 -3.87029 3.37661 3.44886 3.48926 3.88665 4.44879 4.56086 4.64391 4.67096 4.72028 4.86061 5.02994 5.06320 5.30931 5.33471 5.40393 5.43909 5.47472 5.49427 5.54269 5.55183 5.56832 5.64906 5.66552 5.70580 5.71866 5.81662 5.85901 5.89880 5.90715 6.01995 6.09564 6.12239 6.18038 6.24604 6.27843 6.34191 6.42739 6.43496 6.70126 6.90725 6.99432 7.12575 7.33939 7.55220 7.81596 7.88007 8.11009 8.26181 8.60483 9.22254 9.75491 11.24989 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020713 B = 0.003281 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.507360 B = 8531.809533 C = 9555.293420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.072 0.928 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.661 5.661 15 C 0.086 3.914 16 H 0.089 0.911 17 C -0.175 4.175 18 C 0.042 3.958 19 N -0.525 5.525 20 C 0.061 3.939 21 C -0.064 4.064 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.129 4.129 25 C 0.053 3.947 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.032 0.968 33 H 0.257 0.743 34 H 0.335 0.665 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.050 0.950 50 H 0.087 0.913 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 2.879 19.297 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.090 0.910 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.290 5.290 15 C -0.025 4.025 16 H 0.107 0.893 17 C -0.215 4.215 18 C -0.086 4.086 19 N -0.249 5.249 20 C -0.068 4.068 21 C -0.065 4.065 22 C -0.204 4.204 23 C -0.199 4.199 24 C -0.187 4.187 25 C -0.075 4.075 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.131 3.442 19.227 22.004 hybrid contribution -0.993 -1.225 -0.746 1.745 sum -11.124 2.217 18.481 21.684 Atomic orbital electron populations 1.22632 0.98651 1.01432 1.01364 1.21788 0.90905 0.98252 0.91421 0.90978 1.21634 1.00655 0.98303 0.93074 1.18994 0.88254 0.96491 0.96998 1.21389 0.91841 1.33949 1.08414 0.93126 1.24998 0.97166 0.95815 0.96491 1.69989 1.02084 1.44438 1.36855 0.86639 0.78807 0.79544 0.83591 1.19921 1.21187 1.21143 1.60400 1.57383 1.08496 1.02683 1.22771 0.92345 0.97201 0.90213 0.89292 1.23687 0.99501 1.01391 0.96954 1.23022 0.88502 1.01113 0.95995 1.63546 1.14016 1.44086 1.03226 1.22339 1.00848 0.93023 0.90541 1.20519 0.95899 0.96114 0.93950 1.22156 0.95661 1.01104 1.01503 1.21866 1.01118 0.99232 0.97722 1.21709 0.98696 0.97040 1.01229 1.22986 0.99622 0.97888 0.86985 0.92974 0.93441 0.92404 0.93586 0.93574 0.97492 0.94928 0.93325 0.84602 0.91740 0.91074 0.92414 0.90883 0.94820 0.90920 0.93314 0.93238 0.91413 0.92586 0.92639 0.93026 0.91101 0.93898 0.93119 0.89493 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.02 37.16 0.34 -2.09 16 2 C 0.09 1.43 2.59 -67.71 -0.18 1.25 16 3 H 0.07 1.26 7.44 -51.93 -0.39 0.88 16 4 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 10 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 N -0.66 -10.44 5.62 -97.36 -0.55 -10.98 16 15 C 0.09 1.18 3.32 -65.43 -0.22 0.96 16 16 H 0.09 1.32 7.45 -51.93 -0.39 0.94 16 17 C -0.18 -1.92 5.66 -24.76 -0.14 -2.06 16 18 C 0.04 0.43 4.87 -2.83 -0.01 0.42 16 19 N -0.52 -6.08 4.09 -231.25 -0.95 -7.03 16 20 C 0.06 0.64 3.89 -3.83 -0.01 0.63 16 21 C -0.06 -0.58 0.85 -154.51 -0.13 -0.71 16 22 C -0.15 -1.23 6.99 37.16 0.26 -0.97 16 23 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 24 C -0.13 -1.25 8.24 37.16 0.31 -0.94 16 25 C 0.05 0.73 6.32 -2.30 -0.01 0.71 16 26 H 0.05 0.67 8.13 -51.92 -0.42 0.25 16 27 H 0.05 0.56 6.04 -51.93 -0.31 0.25 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.34 4.87 7.94 -39.29 -0.31 4.56 16 35 H 0.06 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.07 0.75 6.91 -51.93 -0.36 0.39 16 37 H 0.06 0.55 5.33 -51.93 -0.28 0.28 16 38 H 0.07 0.74 7.37 -51.93 -0.38 0.36 16 39 H 0.03 0.35 7.71 -51.93 -0.40 -0.05 16 40 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 41 H 0.05 0.40 7.40 -51.93 -0.38 0.01 16 42 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 43 H 0.07 0.59 5.50 -51.93 -0.29 0.31 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.05 0.70 7.81 -51.93 -0.41 0.30 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -30.00 379.89 -10.33 -40.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -10.11 Total: 0.61 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.17 Total: -18.99 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.76 Total: -44.86 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.00 -10.33 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489450.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.548 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds