Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.52998 * 109.47192 * 239.99671 * 2 1 3 5 5 C 1.53001 * 109.47131 * 65.62539 * 4 2 1 6 6 C 1.50698 * 109.47216 * 174.83028 * 5 4 2 7 7 H 1.08007 * 119.99843 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00475 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99367 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47079 * 59.99928 * 10 8 6 12 12 H 1.48501 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46877 * 299.99444 * 10 8 6 14 14 N 1.46903 * 109.46726 * 119.99910 * 2 1 3 15 15 C 1.39774 * 111.00028 * 61.04508 * 14 2 1 16 16 C 1.54439 * 111.70230 * 189.17194 * 15 14 2 17 17 C 1.50815 * 109.00576 * 282.50272 * 16 15 14 18 18 C 1.54171 * 112.54500 * 93.10200 * 17 16 15 19 19 C 1.53818 * 111.97276 * 318.48392 * 18 17 16 20 20 H 1.09000 * 108.99410 * 79.55738 * 19 18 17 21 21 C 1.53002 * 109.05144 * 198.49442 * 19 18 17 22 22 C 1.53000 * 109.47003 * 297.11450 * 21 19 18 23 23 C 1.52998 * 109.47269 * 179.97438 * 22 21 19 24 24 N 1.46897 * 109.47495 * 179.97438 * 23 22 21 25 25 C 1.47634 * 110.99812 * 189.94890 * 14 2 1 26 26 H 1.09001 * 109.47000 * 300.00642 * 1 2 3 27 27 H 1.08997 * 109.46915 * 60.00206 * 1 2 3 28 28 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47001 * 185.62627 * 4 2 1 30 30 H 1.09000 * 109.46798 * 305.62774 * 4 2 1 31 31 H 1.08997 * 109.47162 * 294.83230 * 5 4 2 32 32 H 1.08999 * 109.47002 * 54.82579 * 5 4 2 33 33 H 0.97005 * 119.99423 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.02574 * 309.72209 * 15 14 2 35 35 H 1.08996 * 109.02293 * 68.63093 * 15 14 2 36 36 H 1.09008 * 109.54101 * 42.43397 * 16 15 14 37 37 H 1.08993 * 109.54742 * 162.70337 * 16 15 14 38 38 H 1.09003 * 108.89019 * 332.31056 * 17 16 15 39 39 H 1.08994 * 108.79826 * 213.83331 * 17 16 15 40 40 H 1.08996 * 108.97929 * 197.83969 * 18 17 16 41 41 H 1.09000 * 108.98066 * 79.12865 * 18 17 16 42 42 H 1.09001 * 109.46607 * 57.11330 * 21 19 18 43 43 H 1.08991 * 109.47336 * 177.11507 * 21 19 18 44 44 H 1.09001 * 109.47031 * 300.00339 * 22 21 19 45 45 H 1.09001 * 109.47153 * 59.99733 * 22 21 19 46 46 H 1.09001 * 109.46885 * 300.00581 * 23 22 21 47 47 H 1.09002 * 109.46562 * 60.00044 * 23 22 21 48 48 H 1.00897 * 111.00317 * 179.97438 * 24 23 22 49 49 H 1.00893 * 110.99942 * 303.95932 * 24 23 22 50 50 H 1.09001 * 109.74632 * 269.96195 * 25 14 2 51 51 H 1.08997 * 109.74567 * 30.68418 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6488 0.0769 -2.4945 6 6 2.2585 -0.5644 -3.7143 7 1 2.8642 -1.4528 -3.6116 8 6 2.0432 -0.0172 -4.9613 9 7 1.3053 1.0643 -5.0863 10 14 2.7984 -0.8126 -6.4734 11 1 2.2992 -2.2051 -6.6017 12 1 2.4198 -0.0371 -7.6819 13 1 4.2772 -0.8272 -6.3386 14 7 2.0196 -0.6925 1.1995 15 6 1.5910 -2.0227 1.2200 16 6 1.8996 -2.7015 2.5724 17 6 3.3633 -3.0619 2.6184 18 6 4.2221 -1.9637 3.2766 19 6 3.7940 -0.5547 2.8322 20 1 2.9098 -0.2582 3.3964 21 6 4.9282 0.4286 3.1287 22 6 5.1748 0.4827 4.6377 23 6 6.3093 1.4654 4.9342 24 7 6.5458 1.5179 6.3830 25 6 3.4759 -0.5095 1.3587 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1254 -0.8094 -1.2002 30 1 1.5968 -1.7157 -1.3009 31 1 0.5634 0.0869 -2.5934 32 1 2.0144 1.0994 -2.4003 33 1 1.1535 1.4491 -5.9637 34 1 0.5156 -2.0522 1.0449 35 1 2.0954 -2.5708 0.4243 36 1 1.6660 -2.0151 3.3865 37 1 1.2989 -3.6055 2.6723 38 1 3.7188 -3.2247 1.6009 39 1 3.4798 -3.9864 3.1838 40 1 5.2660 -2.1194 3.0045 41 1 4.1247 -2.0389 4.3596 42 1 5.8361 0.0988 2.6237 43 1 4.6525 1.4201 2.7699 44 1 4.2668 0.8123 5.1427 45 1 5.4505 -0.5089 4.9966 46 1 7.2172 1.1354 4.4291 47 1 6.0340 2.4571 4.5752 48 1 7.2915 2.1603 6.6047 49 1 5.7008 1.7592 6.8788 50 1 4.0063 -1.3097 0.8426 51 1 3.7730 0.4552 0.9472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -34.875078 kcal Electronic energy + Delta-G solvation = -23416.362244 eV Core-core repulsion = 20348.848927 eV Total energy + Delta-G solvation = -3067.513317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86869 -37.03309 -35.46639 -33.58307 -33.04932 -31.34718 -30.05299 -28.74858 -26.43814 -25.23444 -24.93596 -23.48307 -21.65516 -21.43339 -21.00609 -19.07710 -18.54145 -16.52161 -16.21268 -15.73630 -15.68525 -15.08186 -14.85960 -14.49250 -14.33865 -14.20599 -13.83439 -13.64437 -12.91669 -12.71636 -12.64690 -12.43437 -12.19385 -12.06682 -11.73899 -11.52302 -11.42801 -11.21386 -11.13120 -10.96491 -10.72148 -10.68326 -10.57241 -10.53971 -10.26583 -10.16413 -10.13865 -10.03302 -9.58260 -9.36698 -9.11747 -9.01467 -8.32738 -7.64809 -5.98710 -4.00952 3.32858 3.37202 3.39815 4.13466 4.34035 4.46596 4.72594 4.77476 4.87860 4.99909 5.04414 5.15585 5.24628 5.34262 5.36490 5.44615 5.48127 5.54780 5.61052 5.69795 5.76669 5.81177 5.82449 5.85495 5.95163 6.00219 6.01600 6.11408 6.15938 6.16478 6.19825 6.28389 6.35228 6.37164 6.42815 6.53298 6.59165 6.64140 6.76244 6.80677 6.85613 7.09628 7.10470 7.60185 7.69120 7.81115 7.89779 8.01430 8.45367 9.05879 9.62819 11.12201 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.003430 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.029693 B = 8162.218077 C = 8748.413908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.026 3.974 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.550 5.550 15 C 0.067 3.933 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.081 4.081 20 H 0.081 0.919 21 C -0.114 4.114 22 C -0.117 4.117 23 C 0.058 3.942 24 N -0.855 5.855 25 C 0.071 3.929 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.339 0.661 49 H 0.339 0.661 50 H 0.041 0.959 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -2.026 20.822 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 H 0.094 0.906 4 C -0.175 4.175 5 C -0.011 4.011 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.272 5.272 15 C -0.063 4.063 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.147 4.147 19 C -0.100 4.100 20 H 0.099 0.901 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.073 4.073 24 N -0.384 5.384 25 C -0.056 4.056 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.059 0.941 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.178 -2.492 21.003 21.775 hybrid contribution 0.555 0.206 -1.772 1.869 sum 5.733 -2.286 19.231 20.197 Atomic orbital electron populations 1.21897 0.94969 1.01450 1.01634 1.21841 0.95305 0.97725 0.87441 0.90598 1.22228 0.99441 0.99594 0.96286 1.19057 0.96766 0.94867 0.90427 1.21240 1.31207 1.11498 0.91917 0.93063 1.25012 0.95345 0.95028 0.99011 1.69956 1.38867 1.20985 1.23694 0.86693 0.79678 0.79410 0.82435 1.20296 1.21260 1.20301 1.59125 1.12607 1.15265 1.40253 1.21030 1.00700 0.88914 0.95642 1.21498 0.95695 0.99855 0.98413 1.21440 0.95644 0.97856 1.00950 1.21976 0.98899 0.94107 0.99697 1.21017 0.98108 0.94148 0.96756 0.90061 1.21694 0.98729 0.99578 0.95233 1.21605 0.97471 0.99964 0.96403 1.21858 0.99317 0.97820 0.88255 1.58727 1.12244 1.59406 1.07977 1.21788 0.87471 1.01122 0.95253 0.93127 0.91335 0.93086 0.93643 0.93469 0.96314 0.96817 0.92992 0.90901 0.95814 0.91098 0.92147 0.92370 0.92817 0.92568 0.92480 0.92074 0.91892 0.92295 0.91106 0.91154 0.95624 0.84872 0.84867 0.94118 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.73 37.16 0.32 -2.00 16 2 C 0.08 1.45 2.32 -67.71 -0.16 1.29 16 3 H 0.08 1.36 7.80 -51.93 -0.41 0.96 16 4 C -0.14 -2.83 3.91 -26.73 -0.10 -2.93 16 5 C 0.03 0.68 4.61 -27.88 -0.13 0.55 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 N -0.55 -8.11 3.91 -231.99 -0.91 -9.02 16 15 C 0.07 0.94 4.19 -6.74 -0.03 0.92 16 16 C -0.12 -1.36 5.64 -27.07 -0.15 -1.51 16 17 C -0.12 -1.35 5.32 -27.21 -0.14 -1.49 16 18 C -0.11 -1.14 4.49 -25.69 -0.12 -1.25 16 19 C -0.08 -0.90 1.77 -91.29 -0.16 -1.07 16 20 H 0.08 0.98 7.25 -51.93 -0.38 0.61 16 21 C -0.11 -1.12 4.43 -26.73 -0.12 -1.24 16 22 C -0.12 -1.03 5.22 -26.73 -0.14 -1.17 16 23 C 0.06 0.48 6.79 -3.83 -0.03 0.46 16 24 N -0.85 -6.51 9.62 -10.37 -0.10 -6.61 16 25 C 0.07 0.97 3.99 -4.52 -0.02 0.95 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.23 6.70 -51.93 -0.35 0.88 16 28 H 0.05 0.80 6.23 -51.93 -0.32 0.48 16 29 H 0.04 0.96 7.23 -51.93 -0.38 0.59 16 30 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 31 H 0.02 0.51 6.84 -51.93 -0.36 0.15 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.05 5.67 -51.93 -0.29 0.75 16 35 H 0.02 0.38 6.15 -51.93 -0.32 0.06 16 36 H 0.07 0.83 7.10 -51.92 -0.37 0.46 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 6.58 -51.93 -0.34 0.38 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 41 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 42 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 43 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.34 2.05 9.08 -39.29 -0.36 1.70 16 49 H 0.34 2.22 8.99 -39.30 -0.35 1.87 16 50 H 0.04 0.60 6.46 -51.93 -0.34 0.27 16 51 H 0.07 1.03 7.08 -51.93 -0.37 0.66 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -29.68 371.08 -10.85 -40.53 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.77 Total: 1.13 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.38 Total: -22.18 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.27 Total: -41.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.68 -10.85 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.655 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds