Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47317 * 120.00452 * 2 1 3 5 5 C 1.53001 * 109.47154 * 185.15314 * 4 2 1 6 6 C 1.50701 * 109.47220 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99805 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00018 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99925 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00058 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47038 * 90.00400 * 10 8 6 12 12 H 1.48500 * 109.47375 * 330.00252 * 10 8 6 13 13 H 1.48501 * 109.47390 * 210.00470 * 10 8 6 14 14 N 1.46902 * 109.47037 * 240.00509 * 2 1 3 15 15 C 1.44269 * 111.00098 * 308.17935 * 14 2 1 16 16 C 1.54060 * 111.98464 * 219.30889 * 15 14 2 17 17 C 1.54291 * 112.28678 * 318.91293 * 16 15 14 18 18 C 1.50465 * 113.03672 * 318.30343 * 17 16 15 19 19 C 1.54504 * 108.85204 * 92.15353 * 18 17 16 20 20 H 1.08990 * 109.00066 * 43.31273 * 19 18 17 21 21 C 1.53003 * 109.05570 * 162.26909 * 19 18 17 22 22 C 1.53004 * 109.46561 * 297.08466 * 21 19 18 23 23 C 1.53003 * 109.46561 * 180.02562 * 22 21 19 24 24 N 1.46900 * 109.46591 * 179.97438 * 23 22 21 25 25 C 1.45870 * 111.58758 * 282.80967 * 19 18 17 26 26 H 1.09007 * 109.46825 * 299.99089 * 1 2 3 27 27 H 1.08999 * 109.47333 * 59.99317 * 1 2 3 28 28 H 1.08999 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47285 * 65.16082 * 4 2 1 30 30 H 1.09001 * 109.47435 * 305.15493 * 4 2 1 31 31 H 1.09004 * 109.46783 * 60.00601 * 5 4 2 32 32 H 1.08998 * 109.47541 * 300.00120 * 5 4 2 33 33 H 0.96997 * 120.00473 * 359.97438 * 9 8 6 34 34 H 1.09005 * 108.97515 * 339.95736 * 15 14 2 35 35 H 1.08998 * 108.97624 * 98.66045 * 15 14 2 36 36 H 1.08995 * 108.92007 * 198.19068 * 16 15 14 37 37 H 1.09002 * 108.84843 * 79.58556 * 16 15 14 38 38 H 1.09002 * 108.77264 * 197.38294 * 17 16 15 39 39 H 1.09003 * 108.76838 * 79.22057 * 17 16 15 40 40 H 1.09003 * 109.56605 * 332.34083 * 18 17 16 41 41 H 1.09000 * 109.57039 * 211.96784 * 18 17 16 42 42 H 1.08999 * 109.46864 * 57.08137 * 21 19 18 43 43 H 1.08993 * 109.46862 * 177.08698 * 21 19 18 44 44 H 1.08997 * 109.47499 * 299.99902 * 22 21 19 45 45 H 1.09003 * 109.47345 * 60.00481 * 22 21 19 46 46 H 1.08995 * 109.47223 * 299.99349 * 23 22 21 47 47 H 1.08993 * 109.46862 * 60.00232 * 23 22 21 48 48 H 1.00909 * 111.00002 * 179.97438 * 24 23 22 49 49 H 1.00893 * 111.00386 * 303.95257 * 24 23 22 50 50 H 1.08997 * 108.79087 * 300.43705 * 25 19 18 51 51 H 1.09008 * 108.79074 * 182.21874 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5645 -0.6101 1.3156 6 6 4.0669 -1.3200 2.5463 7 1 3.3686 -1.8027 3.2141 8 6 5.4179 -1.3543 2.8192 9 7 6.2682 -0.7669 2.0058 10 14 6.0406 -2.2349 4.3443 11 1 6.3238 -3.6550 4.0150 12 1 5.0081 -2.1702 5.4096 13 1 7.2851 -1.5796 4.8209 14 7 2.0196 -0.6924 -1.1995 15 6 1.4071 -1.9918 -1.3327 16 6 2.4077 -3.0530 -1.8286 17 6 3.3337 -2.5113 -2.9374 18 6 2.6104 -1.6584 -3.9441 19 6 2.6912 -0.1816 -3.4972 20 1 3.7043 0.0309 -3.1558 21 6 2.3669 0.7198 -4.6902 22 6 3.4187 0.5175 -5.7829 23 6 3.0947 1.4193 -6.9757 24 7 4.1049 1.2256 -8.0245 25 6 1.7546 0.1040 -2.4160 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.7541 -1.7722 1.2041 30 1 1.6033 -0.2637 2.1368 31 1 3.8505 0.4408 1.3607 32 1 4.0013 -1.0677 0.4280 33 1 5.9449 -0.3100 1.2136 34 1 1.0148 -2.2998 -0.3635 35 1 0.5821 -1.9237 -2.0418 36 1 1.8533 -3.9072 -2.2172 37 1 3.0183 -3.3815 -0.9875 38 1 3.7907 -3.3543 -3.4558 39 1 4.1225 -1.9168 -2.4763 40 1 1.5663 -1.9664 -4.0004 41 1 3.0793 -1.7704 -4.9217 42 1 1.3824 0.4640 -5.0818 43 1 2.3713 1.7616 -4.3701 44 1 4.4032 0.7732 -5.3914 45 1 3.4143 -0.5245 -6.1030 46 1 2.1102 1.1640 -7.3674 47 1 3.0994 2.4611 -6.6553 48 1 3.9128 1.8104 -8.8241 49 1 5.0335 1.3939 -7.6678 50 1 0.7433 -0.1093 -2.7621 51 1 1.8212 1.1625 -2.1643 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -34.956994 kcal Electronic energy + Delta-G solvation = -23817.496005 eV Core-core repulsion = 20749.979136 eV Total energy + Delta-G solvation = -3067.516870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79915 -37.03750 -35.33628 -33.50013 -33.24091 -31.25995 -29.92498 -28.83285 -26.49489 -25.00995 -24.58972 -23.56222 -21.68543 -21.18829 -20.33279 -19.92403 -18.39563 -16.53235 -16.23958 -16.16327 -15.75557 -14.96546 -14.65944 -14.45960 -14.19882 -13.76078 -13.64480 -13.32719 -13.10527 -12.77742 -12.57741 -12.45563 -12.20653 -12.08082 -11.88071 -11.68255 -11.55650 -11.21132 -10.99414 -10.85512 -10.73431 -10.68276 -10.40687 -10.25411 -10.15399 -10.08682 -9.96203 -9.84100 -9.66705 -9.50997 -8.99240 -8.34936 -8.16831 -7.79806 -6.20762 -3.87813 3.49825 3.53682 3.69113 4.06968 4.35189 4.64955 4.71541 4.82560 4.96948 5.02855 5.19860 5.25560 5.35144 5.38638 5.42134 5.46207 5.52754 5.55810 5.56498 5.61385 5.63338 5.71353 5.79496 5.86954 5.89847 5.95219 6.05531 6.06760 6.14021 6.16652 6.23338 6.29637 6.32492 6.46839 6.50078 6.55333 6.60534 6.70002 6.76284 6.83021 6.84708 7.12000 7.18209 7.55143 7.63982 7.69135 7.90467 8.41307 8.64796 9.06410 9.83871 11.20204 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.003936 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.080765 B = 7112.382838 C = 7751.918940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.075 0.925 4 C -0.094 4.094 5 C 0.019 3.981 6 C -0.600 4.600 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.917 5.917 10 Si 1.067 2.933 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.509 5.509 15 C 0.058 3.942 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.083 4.083 20 H 0.079 0.921 21 C -0.111 4.111 22 C -0.119 4.119 23 C 0.060 3.940 24 N -0.854 5.854 25 C 0.064 3.936 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.048 0.952 31 H -0.003 1.003 32 H 0.024 0.976 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.339 0.661 49 H 0.341 0.659 50 H 0.028 0.972 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 2.653 -16.218 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.132 4.132 5 C -0.018 4.018 6 C -0.638 4.638 7 H 0.061 0.939 8 C -0.190 4.190 9 N -0.554 5.554 10 Si 0.897 3.103 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.232 5.232 15 C -0.071 4.071 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.102 4.102 20 H 0.097 0.903 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.071 4.071 24 N -0.383 5.383 25 C -0.064 4.064 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.016 0.984 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.042 0.958 48 H 0.151 0.849 49 H 0.153 0.847 50 H 0.046 0.954 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.642 1.454 -15.311 17.642 hybrid contribution -2.141 1.538 -0.706 2.730 sum -10.784 2.992 -16.017 19.539 Atomic orbital electron populations 1.22549 0.98680 1.01681 1.01288 1.21982 0.91167 0.98358 0.91270 0.90716 1.21588 0.99971 0.98443 0.93193 1.19093 0.89818 0.95727 0.97167 1.22156 0.94498 1.37583 1.09572 0.93889 1.25737 0.93559 0.97016 1.02684 1.70715 1.37287 1.33464 1.13894 0.83575 0.75540 0.76059 0.75154 1.21626 1.21719 1.21147 1.61632 1.58127 1.02195 1.01198 1.21882 0.94811 0.90365 1.00003 1.21916 0.97710 0.96524 0.98566 1.21158 0.99054 0.98814 0.95737 1.21441 1.00366 0.94300 0.98411 1.20189 1.01179 0.95005 0.93802 0.90298 1.21583 0.98650 0.99523 0.95274 1.21652 0.99181 1.00723 0.94150 1.21838 0.95811 0.97284 0.92145 1.58717 1.06033 1.63556 1.10039 1.20974 0.96842 0.97655 0.90915 0.92408 0.93535 0.92635 0.93196 0.93324 0.98426 0.95758 0.91954 0.91432 0.95306 0.93178 0.91427 0.93480 0.91121 0.92744 0.91940 0.92258 0.92262 0.92019 0.90659 0.91291 0.95786 0.84926 0.84672 0.95361 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.63 37.16 0.32 -2.25 16 2 C 0.08 1.37 2.23 -67.71 -0.15 1.22 16 3 H 0.07 1.32 7.78 -51.93 -0.40 0.92 16 4 C -0.09 -1.98 4.55 -26.73 -0.12 -2.10 16 5 C 0.02 0.50 4.17 -27.88 -0.12 0.38 16 6 C -0.60 -17.58 9.11 -34.44 -0.31 -17.89 16 7 H 0.04 1.25 7.74 -52.48 -0.41 0.84 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.86 13.65 55.43 0.76 -28.10 16 10 Si 1.07 26.18 29.90 -169.99 -5.08 21.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.51 -8.28 3.64 -231.55 -0.84 -9.12 16 15 C 0.06 0.89 3.69 -4.68 -0.02 0.87 16 16 C -0.11 -1.65 6.14 -25.50 -0.16 -1.81 16 17 C -0.11 -1.59 5.42 -27.32 -0.15 -1.74 16 18 C -0.11 -1.33 4.89 -27.21 -0.13 -1.46 16 19 C -0.08 -1.03 1.95 -93.20 -0.18 -1.22 16 20 H 0.08 1.16 7.58 -51.93 -0.39 0.76 16 21 C -0.11 -1.12 4.62 -26.73 -0.12 -1.25 16 22 C -0.12 -1.16 5.23 -26.73 -0.14 -1.30 16 23 C 0.06 0.51 6.79 -3.82 -0.03 0.49 16 24 N -0.85 -6.99 9.62 -10.37 -0.10 -7.09 16 25 C 0.06 0.87 3.36 -6.70 -0.02 0.84 16 26 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.05 0.59 7.32 -51.93 -0.38 0.21 16 28 H 0.05 0.77 6.43 -51.93 -0.33 0.43 16 29 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 32 H 0.02 0.67 7.62 -51.93 -0.40 0.28 16 33 H 0.27 8.52 7.22 -40.82 -0.29 8.23 16 34 H 0.07 1.09 4.89 -51.93 -0.25 0.84 16 35 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.21 7.38 -51.93 -0.38 0.82 16 40 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 41 H 0.06 0.71 5.85 -51.93 -0.30 0.41 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.79 6.16 -51.93 -0.32 0.47 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.34 2.16 9.08 -39.29 -0.36 1.81 16 49 H 0.34 2.53 8.99 -39.30 -0.35 2.18 16 50 H 0.03 0.36 6.95 -51.93 -0.36 0.00 16 51 H 0.06 0.83 7.51 -51.92 -0.39 0.44 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.14 372.33 -10.90 -42.04 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -9.81 Total: 2.47 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -1.43 Total: -26.91 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.19 Total: -44.31 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.14 -10.90 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.080 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds